Works matching IS 20412649 AND DT 2024 AND VI 23 AND IP 4

Results: 19

A comprehensive survey on deep learning-based identification and predicting the interaction mechanism of long non-coding RNAs.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 314, doi. 10.1093/bfgp/elae010

By:

Diao, Biyu;
Luo, Jin;
Guo, Yu

Publication type:

Article

ASACO: Automatic and Serial Analysis of CO-expression to discover gene modifiers with potential use in drug repurposing.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 484, doi. 10.1093/bfgp/elae006

By:

Moral-Turón, Cristina;
Asencio-Cortés, Gualberto;
Rodriguez-Diaz, Francesc;
Rubio, Alejandro;
Navarro, Alberto G;
Brokate-Llanos, Ana M;
Garzón, Andrés;
Muñoz, Manuel J;
Pérez-Pulido, Antonio J

Publication type:

Article

GAM-MDR: probing miRNA–drug resistance using a graph autoencoder based on random path masking.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 475, doi. 10.1093/bfgp/elae005

By:

Zhou, Zhecheng;
Du, Zhenya;
Jiang, Xin;
Zhuo, Linlin;
Xu, Yixin;
Fu, Xiangzheng;
Liu, Mingzhe;
Zou, Quan

Publication type:

Article

Predicting the role of the human gut microbiome in type 1 diabetes using machine-learning methods.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 464, doi. 10.1093/bfgp/elae004

By:

Liu, Xiao-Wei;
Li, Han-Lin;
Ma, Cai-Yi;
Shi, Tian-Yu;
Wang, Tian-Yu;
Yan, Dan;
Tang, Hua;
Lin, Hao;
Deng, Ke-Jun

Publication type:

Article

A comprehensive review of deep learning-based variant calling methods.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 303, doi. 10.1093/bfgp/elae003

By:

Junjun, Ren;
Zhengqian, Zhang;
Ying, Wu;
Jialiang, Wang;
Yongzhuang, Liu

Publication type:

Article

Integration tools for scRNA-seq data and spatial transcriptomics sequencing data.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 295, doi. 10.1093/bfgp/elae002

By:

Yan, Chaorui;
Zhu, Yanxu;
Chen, Miao;
Yang, Kainan;
Cui, Feifei;
Zou, Quan;
Zhang, Zilong

Publication type:

Article

DeepPRMS: advanced deep learning model to predict protein arginine methylation sites.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 452, doi. 10.1093/bfgp/elae001

By:

Khandelwal, Monika;
Rout, Ranjeet Kumar

Publication type:

Article

Improving cell type identification with Gaussian noise-augmented single-cell RNA-seq contrastive learning.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 441, doi. 10.1093/bfgp/elad059

By:

Alsaggaf, Ibrahim;
Buchan, Daniel;
Wan, Cen

Publication type:

Article

Personalized differential expression analysis in triple-negative breast cancer.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 495, doi. 10.1093/bfgp/elad057

By:

Cai, Hao;
Chen, Liangbo;
Yang, Shuxin;
Jiang, Ronghong;
Guo, You;
He, Ming;
Luo, Yun;
Hong, Guini;
Li, Hongdong;
Song, Kai

Publication type:

Article

Predicting drug synergy using a network propagation inspired machine learning framework.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 429, doi. 10.1093/bfgp/elad056

By:

Jin, Qing;
Zhang, Xianze;
Huo, Diwei;
Xie, Hongbo;
Zhang, Denan;
Liu, Lei;
Zhao, Yashuang;
Chen, Xiujie

Publication type:

Article

Genomics in Clinical trials for Breast Cancer.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 325, doi. 10.1093/bfgp/elad054

By:

Enoma, David

Publication type:

Article

DeepWalk-aware graph attention networks with CNN for circRNA–drug sensitivity association identification.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 418, doi. 10.1093/bfgp/elad053

By:

Li, Guanghui;
Li, Youjun;
Liang, Cheng;
Luo, Jiawei

Publication type:

Article

Integrating multi-omics data to analyze the potential pathogenic mechanism of CTSH gene involved in type 1 diabetes in the exocrine pancreas.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 406, doi. 10.1093/bfgp/elad052

By:

Song, Zerun;
Li, Shuai;
Shang, Zhenwei;
Lv, Wenhua;
Cheng, Xiangshu;
Meng, Xin;
Chen, Rui;
Zhang, Shuhao;
Zhang, Ruijie

Publication type:

Article

From bench to bedside: potential of translational research in COVID-19 and beyond.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 349, doi. 10.1093/bfgp/elad051

By:

Shukla, Nityendra;
Shamim, Uzma;
Agarwal, Preeti;
Pandey, Rajesh;
Narayan, Jitendra

Publication type:

Article

Competing endogenous RNAs in head and neck squamous cell carcinoma: a review.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 335, doi. 10.1093/bfgp/elad049

By:

Agrawal, Avantika;
Vindal, Vaibhav

Publication type:

Article

Systematic analysis and characterization of long non-coding RNA genes in inflammatory bowel disease.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 395, doi. 10.1093/bfgp/elad044

By:

Velissari, Rania;
Ilieva, Mirolyuba;
Dao, James;
Miller, Henry E;
Madsen, Jens Hedelund;
Gorodkin, Jan;
Aikawa, Masanori;
Ishii, Hideshi;
Uchida, Shizuka

Publication type:

Article

THGNCDA: circRNA–disease association prediction based on triple heterogeneous graph network.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 384, doi. 10.1093/bfgp/elad042

By:

Guo, Yuwei;
Yi, Ming

Publication type:

Article

EIEPCF: accurate inference of functional gene regulatory networks by eliminating indirect effects from confounding factors.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 373, doi. 10.1093/bfgp/elad040

By:

Peng, Huixiang;
Xu, Jing;
Liu, Kangchen;
Liu, Fang;
Zhang, Aidi;
Zhang, Xiujun

Publication type:

Article

DBPMod: a supervised learning model for computational recognition of DNA-binding proteins in model organisms.

Published in:

Briefings in Functional Genomics, 2024, v. 23, n. 4, p. 363, doi. 10.1093/bfgp/elad039

By:

Pradhan, Upendra K;
Meher, Prabina K;
Naha, Sanchita;
Sharma, Nitesh K;
Agarwal, Aarushi;
Gupta, Ajit;
Parsad, Rajender

Publication type:

Article