Works matching IS 20411480 AND DT 2024 AND VI 15 AND IP 1

Results: 16

FAIR Data Cube, a FAIR data infrastructure for integrated multi-omics data analysis.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00321-2

By:

Liao, Xiaofeng;
Ederveen, Thomas H.A.;
Niehues, Anna;
de Visser, Casper;
Huang, Junda;
Badmus, Firdaws;
Doornbos, Cenna;
Orlova, Yuliia;
Kulkarni, Purva;
van der Velde, K. Joeri;
Swertz, Morris A.;
Brandt, Martin;
van Gool, Alain J.;
't Hoen, Peter A. C.

Publication type:

Article

An extensible and unifying approach to retrospective clinical data modeling: the BrainTeaser Ontology.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00317-y

By:

Faggioli, Guglielmo;
Menotti, Laura;
Marchesin, Stefano;
Chió, Adriano;
Dagliati, Arianna;
de Carvalho, Mamede;
Gromicho, Marta;
Manera, Umberto;
Tavazzi, Eleonora;
Di Nunzio, Giorgio Maria;
Silvello, Gianmaria;
Ferro, Nicola

Publication type:

Article

Concretizing plan specifications as realizables within the OBO foundry.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00315-0

By:

Duncan, William D.;
Diller, Matthew;
Dooley, Damion;
Hogan, William R.;
Beverley, John

Publication type:

Article

RecSOI: recommending research directions using statements of ignorance.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00304-3

By:

Bibal, Adrien;
Salem, Nourah M.;
Cardon, Rémi;
White, Elizabeth K.;
Acuna, Daniel E.;
Burke, Robin;
Hunter, Lawrence E.

Publication type:

Article

Dynamic Retrieval Augmented Generation of Ontologies using Artificial Intelligence (DRAGON-AI).

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00320-3

By:

Toro, Sabrina;
Anagnostopoulos, Anna V.;
Bello, Susan M.;
Blumberg, Kai;
Cameron, Rhiannon;
Carmody, Leigh;
Diehl, Alexander D.;
Dooley, Damion M.;
Duncan, William D.;
Fey, Petra;
Gaudet, Pascale;
Harris, Nomi L.;
Joachimiak, Marcin P.;
Kiani, Leila;
Lubiana, Tiago;
Munoz-Torres, Monica C.;
O'Neil, Shawn;
Osumi-Sutherland, David;
Puig-Barbe, Aleix;
Reese, Justin T.

Publication type:

Article

MeSH2Matrix: combining MeSH keywords and machine learning for biomedical relation classification based on PubMed.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00319-w

By:

Turki, Houcemeddine;
Dossou, Bonaventure F. P.;
Emezue, Chris Chinenye;
Owodunni, Abraham Toluwase;
Hadj Taieb, Mohamed Ali;
Ben Aouicha, Mohamed;
Ben Hassen, Hanen;
Masmoudi, Afif

Publication type:

Article

Annotation of epilepsy clinic letters for natural language processing.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00316-z

By:

Fonferko-Shadrach, Beata;
Strafford, Huw;
Jones, Carys;
Khan, Russell A.;
Brown, Sharon;
Edwards, Jenny;
Hawken, Jonathan;
Shrimpton, Luke E.;
White, Catharine P.;
Powell, Robert;
Sawhney, Inder M. S.;
Pickrell, William O.;
Lacey, Arron S.

Publication type:

Article

Enriching the FIDEO ontology with food-drug interactions from online knowledge sources.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00302-5

By:

Azzi, Rabia;
Bordea, Georgeta;
Griffier, Romain;
Nikiema, Jean Noël;
Mougin, Fleur

Publication type:

Article

Mapping vaccine names in clinical trials to vaccine ontology using cascaded fine-tuned domain-specific language models.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00318-x

By:

Li, Jianfu;
Li, Yiming;
Pan, Yuanyi;
Guo, Jinjing;
Sun, Zenan;
Li, Fang;
He, Yongqun;
Tao, Cui

Publication type:

Article

Chemical entity normalization for successful translational development of Alzheimer's disease and dementia therapeutics.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00314-1

By:

Mullin, Sarah;
McDougal, Robert;
Cheung, Kei-Hoi;
Kilicoglu, Halil;
Beck, Amanda;
Zeiss, Caroline J.

Publication type:

Article

Empowering standardization of cancer vaccines through ontology: enhanced modeling and data analysis.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00312-3

By:

Zheng, Jie;
Li, Xingxian;
Masci, Anna Maria;
Kahn, Hayleigh;
Huffman, Anthony;
Asfaw, Eliyas;
Pan, Yuanyi;
Guo, Jinjing;
He, Virginia;
Song, Justin;
Seleznev, Andrey I.;
Lin, Asiyah Yu;
He, Yongqun

Publication type:

Article

Correction to: Semantic units: organizing knowledge graphs into semantically meaningful units of representation.

Published in:

2024

By:

Vogt, Lars;
Kuhn, Tobias;
Hoehndorf, Robert

Publication type:

Correction Notice

Explanatory argumentation in natural language for correct and incorrect medical diagnoses.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00306-1

By:

Molinet, Benjamin;
Marro, Santiago;
Cabrio, Elena;
Villata, Serena

Publication type:

Article

Semantic units: organizing knowledge graphs into semantically meaningful units of representation.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00310-5

By:

Lars, Vogt;
Tobias, Kuhn;
Robert, Hoehndorf

Publication type:

Article

Leveraging logical definitions and lexical features to detect missing IS-A relations in biomedical terminologies.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00309-y

By:

Abeysinghe, Rashmie;
Zheng, Fengbo;
Shi, Jay;
Lhatoo, Samden D.;
Cui, Licong

Publication type:

Article

Elucidating the semantics-topology trade-off for knowledge inference-based pharmacological discovery.

Published in:

Journal of Biomedical Semantics, 2024, v. 15, n. 1, p. 1, doi. 10.1186/s13326-024-00308-z

By:

Sosa, Daniel N.;
Neculae, Georgiana;
Fauqueur, Julien;
Altman, Russ B.

Publication type:

Article