Works matching IS 20411480 AND DT 2022 AND VI 13

Results: 28

We are not ready yet: limitations of state-of-the-art disease named entity recognizers.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00280-6

By:

Kühnel, Lisa;
Fluck, Juliane

Publication type:

Article

A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00279-z

By:

He, Yongqun;
Yu, Hong;
Huffman, Anthony;
Lin, Asiyah Yu;
Natale, Darren A.;
Beverley, John;
Zheng, Ling;
Perl, Yehoshua;
Wang, Zhigang;
Liu, Yingtong;
Ong, Edison;
Wang, Yang;
Huang, Philip;
Tran, Long;
Du, Jinyang;
Shah, Zalan;
Shah, Easheta;
Desai, Roshan;
Huang, Hsin-hui;
Tian, Yujia

Publication type:

Article

Correction: PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature.

Published in:

2022

By:

Binkheder, Samar;
Wu, Heng-Yi;
Quinney, Sara K.;
Zhang, Shijun;
Zitu, Md. Muntasir;
Chiang, Chien-Wei;
Wang, Lei;
Jones, Josette;
Li, Lang

Publication type:

Correction Notice

Alignment of vaccine codes using an ontology of vaccine descriptions.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, p. 1, doi. 10.1186/s13326-022-00278-0

By:

Becker, Benedikt FH;
Kors, Jan A;
van Mulligen, Erik M;
Sturkenboom, Miriam CJM

Publication type:

Article

Pathling: analytics on FHIR.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00277-1

By:

Grimes, John;
Szul, Piotr;
Metke-Jimenez, Alejandro;
Lawley, Michael;
Loi, Kylynn

Publication type:

Article

Anatomy and the type concept in biology show that ontologies must be adapted to the diagnostic needs of research.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00268-2

By:

Vogt, Lars;
Mikó, István;
Bartolomaeus, Thomas

Publication type:

Article

DCSO: towards an ontology for machine-actionable data management plans.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00274-4

By:

Cardoso, João;
Castro, Leyla J.;
Ekaputra, Fajar J.;
Jacquemot, Marie C.;
Suchánek, Marek;
Miksa, Tomasz;
Borbinha, José

Publication type:

Article

Alignment of vaccine codes using an ontology of vaccine descriptions.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00278-0

By:

Becker, Benedikt FH;
Kors, Jan A;
van Mulligen, Erik M;
Sturkenboom, Miriam CJM

Publication type:

Article

PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00272-6

By:

Binkheder, Samar;
Wu, Heng-Yi;
Quinney, Sara K.;
Zhang, Shijun;
Zitu, Md. Muntasir;
Chiang, Chien‐Wei;
Wang, Lei;
Jones, Josette;
Li, Lang

Publication type:

Article

Performance assessment of ontology matching systems for FAIR data.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00273-5

By:

van Damme, Philip;
Fernández-Breis, Jesualdo Tomás;
Benis, Nirupama;
Miñarro-Gimenez, Jose Antonio;
de Keizer, Nicolette F.;
Cornet, Ronald

Publication type:

Article

Identification of missing hierarchical relations in the vaccine ontology using acquired term pairs.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00276-2

By:

Manuel, Warren;
Abeysinghe, Rashmie;
He, Yongqun;
Tao, Cui;
Cui, Licong

Publication type:

Article

PhenoDEF: a corpus for annotating sentences with information of phenotype definitions in biomedical literature.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00272-6

By:

Binkheder, Samar;
Wu, Heng-Yi;
Quinney, Sara K.;
Zhang, Shijun;
Zitu, Md. Muntasir;
Chiang, Chien‐Wei;
Wang, Lei;
Jones, Josette;
Li, Lang

Publication type:

Article

Synthesizing evidence from clinical trials with dynamic interactive argument trees.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00270-8

By:

Sanchez-Graillet, Olivia;
Witte, Christian;
Grimm, Frank;
Grautoff, Steffen;
Ell, Basil;
Cimiano, Philipp

Publication type:

Article

Exploiting document graphs for inter sentence relation extraction.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00267-3

By:

Le, Hoang-Quynh;
Can, Duy-Cat;
Collier, Nigel

Publication type:

Article

An annotated corpus of clinical trial publications supporting schema-based relational information extraction.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00271-7

By:

Sanchez-Graillet, Olivia;
Witte, Christian;
Grimm, Frank;
Cimiano, Philipp

Publication type:

Article

Extending electronic medical records vector models with knowledge graphs to improve hospitalization prediction.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00261-9

By:

Gazzotti, Raphaël;
Faron, Catherine;
Gandon, Fabien;
Lacroix-Hugues, Virginie;
Darmon, David

Publication type:

Article

SemClinBr - a multi-institutional and multi-specialty semantically annotated corpus for Portuguese clinical NLP tasks.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00269-1

By:

Oliveira, Lucas Emanuel Silva e;
Peters, Ana Carolina;
da Silva, Adalniza Moura Pucca;
Gebeluca, Caroline Pilatti;
Gumiel, Yohan Bonescki;
Cintho, Lilian Mie Mukai;
Carvalho, Deborah Ribeiro;
Al Hasan, Sadid;
Moro, Claudia Maria Cabral

Publication type:

Article

Improving reusability along the data life cycle: a regulatory circuits case study.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00266-4

By:

Louarn, Marine;
Chatonnet, Fabrice;
Garnier, Xavier;
Fest, Thierry;
Siegel, Anne;
Faron, Catherine;
Dameron, Olivier

Publication type:

Article

Defining health data elements under the HL7 development framework for metadata management.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00265-5

By:

Yang, Zhe;
Jiang, Kun;
Lou, Miaomiao;
Gong, Yang;
Zhang, Lili;
Liu, Jing;
Bao, Xinyu;
Liu, Danhong;
Yang, Peng

Publication type:

Article

Semantic modelling of common data elements for rare disease registries, and a prototype workflow for their deployment over registry data.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00264-6

By:

Kaliyaperumal, Rajaram;
Wilkinson, Mark D.;
Moreno, Pablo Alarcón;
Benis, Nirupama;
Cornet, Ronald;
dos Santos Vieira, Bruna;
Dumontier, Michel;
Bernabé, César Henrique;
Jacobsen, Annika;
Le Cornec, Clémence M. A.;
Godoy, Mario Prieto;
Queralt-Rosinach, Núria;
Schultze Kool, Leo J.;
Swertz, Morris A.;
van Damme, Philip;
van der Velde, K. Joeri;
Lalout, Nawel;
Zhang, Shuxin;
Roos, Marco

Publication type:

Article

Transfer language space with similar domain adaptation: a case study with hepatocellular carcinoma.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00262-8

By:

Tariq, Amara;
Kallas, Omar;
Balthazar, Patricia;
Lee, Scott Jeffery;
Desser, Terry;
Rubin, Daniel;
Gichoya, Judy Wawira;
Banerjee, Imon

Publication type:

Article

Applying the FAIR principles to data in a hospital: challenges and opportunities in a pandemic.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00263-7

By:

Queralt-Rosinach, Núria;
Kaliyaperumal, Rajaram;
Bernabé, César H.;
Long, Qinqin;
Joosten, Simone A.;
van der Wijk, Henk Jan;
Flikkenschild, Erik L.A.;
Burger, Kees;
Jacobsen, Annika;
Mons, Barend;
Roos, Marco

Publication type:

Article

A multipurpose TNM stage ontology for cancer registries.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00260-w

By:

Nicholson, Nicholas Charles;
Giusti, Francesco;
Bettio, Manola;
Carvalho, Raquel Negrao;
Dimitrova, Nadya;
Dyba, Tadeusz;
Flego, Manuela;
Neamtiu, Luciana;
Randi, Giorgia;
Martos, Carmen

Publication type:

Article

Text mining-based measurement of precision of polysomnographic reports as basis for intervention.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-022-00259-3

By:

Baty, Florent;
Hegermann, Jemima;
Locatelli, Tiziana;
Rüegg, Claudio;
Gysin, Christian;
Rassouli, Frank;
Brutsche, Martin

Publication type:

Article

Structure-based knowledge acquisition from electronic lab notebooks for research data provenance documentation.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-021-00257-x

By:

Schröder, Max;
Staehlke, Susanne;
Groth, Paul;
Nebe, J. Barbara;
Spors, Sascha;
Krüger, Frank

Publication type:

Article

Ontology-based identification and prioritization of candidate drugs for epilepsy from literature.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-021-00258-w

By:

Müller, Bernd;
Castro, Leyla Jael;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

An annotated dataset for extracting gene-melanoma relations from scientific literature.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-021-00251-3

By:

Zanoli, Roberto;
Lavelli, Alberto;
Löffler, Theresa;
Perez Gonzalez, Nicolas Andres;
Rinaldi, Fabio

Publication type:

Article

End-to-End provenance representation for the understandability and reproducibility of scientific experiments using a semantic approach.

Published in:

Journal of Biomedical Semantics, 2022, v. 13, n. 1, p. 1, doi. 10.1186/s13326-021-00253-1

By:

Samuel, Sheeba;
König-Ries, Birgitta

Publication type:

Article