Works matching IS 20411480 AND DT 2017 AND VI 8

Results: 56

A document-centric approach for developing the tolAPC ontology.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0159-4
By:
- Blfgeh, Aisha;
- Warrender, Jennifer;
- Hilkens, Catharien M. U.;
- Lord, Phillip
Publication type:
Article
Integrating phenotype ontologies with PhenomeNET.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0167-4
By:
- Rodríguez-García, Miguel Ángel;
- Gkoutos, Georgios V.;
- Schofield, Paul N.;
- Hoehndorf, Robert
Publication type:
Article
Identifying genotype-phenotype relationships in biomedical text.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0163-8
By:
- Khordad, Maryam;
- Mercer, Robert E.
Publication type:
Article
Experiences from the anatomy track in the ontology alignment evaluation initiative.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0166-5
By:
- Dragisic, Zlatan;
- Ivanova, Valentina;
- Huanyu Li;
- Lambrix, Patrick
Publication type:
Article
Matching disease and phenotype ontologies in the ontology alignment evaluation initiative.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0162-9
By:
- Harrow, Ian;
- Jiménez-Ruiz, Ernesto;
- Splendiani, Andrea;
- Romacker, Martin;
- Woollard, Peter;
- Markel, Scott;
- Alam-Faruque, Yasmin;
- Koch, Martin;
- Malone, James;
- Waaler, Arild
Publication type:
Article
The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0165-6
By:
- Henry, Vincent J.;
- Goelzer, Anne;
- Ferré, Arnaud;
- Fischer, Stephan;
- Dinh, Marc;
- Loux, Valentin;
- Froidevaux, Christine;
- Fromion, Vincent
Publication type:
Article
Using semantics for representing experimental protocols.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0160-y
By:
- Giraldo, Olga;
- García, Alexander;
- López, Federico;
- Corcho, Oscar
Publication type:
Article
Drug target ontology to classify and integrate drug discovery data.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0161-x
By:
- Yu Lin;
- Mehta, Saurabh;
- Küçük-McGinty, Hande;
- Turner, John Paul;
- Vidovic, Dusica;
- Forlin, Michele;
- Koleti, Amar;
- Nguyen, Dac-Trung;
- Jensen, Lars Juhl;
- Guha, Rajarshi;
- Mathias, Stephen L.;
- Ursu, Oleg;
- Stathias, Vasileios;
- Duan, Jianbin;
- Nabizadeh, Nooshin;
- Chung, Caty;
- Mader, Christopher;
- Visser, Ubbo;
- Yang, Jeremy J.;
- Bologa, Cristian G.
Publication type:
Article
Entity recognition in the biomedical domain using a hybrid approach.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0157-6
By:
- Basaldella, Marco;
- Furrer, Lenz;
- Tasso, Carlo;
- Rinaldi, Fabio
Publication type:
Article
Querying clinical data in HL7 RIM based relational model with morph-RDB.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0155-8
By:
- Priyatna, Freddy;
- Alonso-Calvo, Raul;
- Paraiso-Medina, Sergio;
- Corcho, Oscar
Publication type:
Article
Towards refactoring the Molecular Function Ontology with a UML profile for function modeling.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0152-y
By:
- Burek, Patryk;
- Loebe, Frank;
- Herre, Heinrich
Publication type:
Article
A histological ontology of the human cardiovascular system.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0158-5
By:
- Mazo, Claudia;
- Salazar, Liliana;
- Corcho, Oscar;
- Trujillo, Maria;
- Alegre, Enrique
Publication type:
Article
Simplifying drug package leaflets written in Spanish by using word embedding.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0156-7
By:
- Segura-Bedmar, Isabel;
- Martínez, Paloma
Publication type:
Article
Analysis and visualization of disease courses in a semantically-enabled cancer registry.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0154-9
By:
- Esteban-Gil, Angel;
- Fernández-Breis, Jesualdo Tomás;
- Boeker, Martin
Publication type:
Article
Semantic annotation in biomedicine: the current landscape.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0153-x
By:
- Jovanović, Jelena;
- Bagheri, Ebrahim
Publication type:
Article
Large-scale online semantic indexing of biomedical articles via an ensemble of multi-label classification models.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0150-0
By:
- Papanikolaou, Yannis;
- Tsoumakas, Grigorios;
- Laliotis, Manos;
- Markantonatos, Nikos;
- Vlahavas, Ioannis
Publication type:
Article
PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 75, doi. 10.1186/s13326-017-0151-z
By:
- Djokic-Petrovic, Marija;
- Cvjetkovic, Vladimir;
- Yang, Jeremy;
- Zivanovic, Marko;
- Wild, David J.
Publication type:
Article
An automatic approach for constructing a knowledge base of symptoms in Chinese.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 66, doi. 10.1186/s13326-017-0145-x
By:
- Tong Ruan;
- Mengjie Wang;
- Jian Sun;
- Ting Wang;
- Lu Zeng;
- Yichao Yin;
- Ju Gao
Publication type:
Article
Investigations on factors influencing HPO-based semantic similarity calculation.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 57, doi. 10.1186/s13326-017-0144-y
By:
- Jiajie Peng;
- Qianqian Li;
- Xuequn Shang
Publication type:
Article
A novel method to identify pre-microRNA in various species knowledge base on various species.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 50, doi. 10.1186/s13326-017-0143-z
By:
- Tianyi Zhao;
- Ningyi Zhang;
- Ying Zhang;
- Jun Ren;
- Peigang Xu;
- Zhiyan Liu;
- Liang Cheng;
- Yang Hu
Publication type:
Article
Dynamically analyzing cell interactions in biological environments using multiagent social learning framework.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 40, doi. 10.1186/s13326-017-0142-0
By:
- Chengwei Zhang;
- Xiaohong Li;
- Shuxin Li;
- Zhiyong Feng
Publication type:
Article
Constructing an integrated gene similarity network for the identification of disease genes.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 25, doi. 10.1186/s13326-017-0141-1
By:
- Zhen Tian;
- Maozu Guo;
- Chunyu Wang;
- Lin Lin Xing;
- Lei Wang;
- Yin Zhang
Publication type:
Article
DisSetSim: an online system for calculating similarity between disease sets.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 18, doi. 10.1186/s13326-017-0140-2
By:
- Yang Hu;
- Lingling Zhao;
- Zhiyan Liu;
- Hong Ju;
- Hongbo Shi;
- Peigang Xu;
- Yadong Wang;
- Liang Cheng
Publication type:
Article
Revealing protein functions based on relationships of interacting proteins and GO terms.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 9, doi. 10.1186/s13326-017-0139-8
By:
- Zhixia Teng;
- Maozu Guo;
- Xiaoyan Liu;
- Zhen Tian;
- Kai Che
Publication type:
Article
Multiple kernels learning-based biological entity relationship extraction method.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0138-9
By:
- Xu Dongliang;
- Pan Jingchang;
- Wang Bailing
Publication type:
Article
Towards achieving semantic interoperability of clinical study data with FHIR.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0148-7
By:
- Leroux, Hugo;
- Metke-Jimenez, Alejandro;
- Lawley, Michael J.
Publication type:
Article
Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0146-9
By:
- Jha, Alokkumar;
- Khan, Yasar;
- Mehdi, Muntazir;
- Karim, Md Rezaul;
- Mehmood, Qaiser;
- Zappa, Achille;
- Rebholz-Schuhmann, Dietrich;
- Sahay, Ratnesh
Publication type:
Article
Towards a more molecular taxonomy of disease.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0134-0
By:
- Jisoo Park;
- Hescott, Benjamin J.;
- Slonim, Donna K.
Publication type:
Article
Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0129-x
By:
- Gruca, Aleksandra;
- Sikora, Marek
Publication type:
Article
RDFIO: extending Semantic MediaWiki for interoperable biomedical data management.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0136-y
By:
- Lampa, Samuel;
- Willighagen, Egon;
- Kohonen, Pekka;
- King, Ali;
- Vrandečić, Denny;
- Grafström, Roland;
- Spjuth, Ola
Publication type:
Article
Disease Compass- a navigation system for disease knowledge based on ontology and linked data techniques.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0132-2
By:
- Kouji Kozaki;
- Yuki Yamagata;
- Riichiro Mizoguchi;
- Takeshi Imai;
- Kazuhiko Ohe
Publication type:
Article
An ontology-driven tool for structured data acquisition using Web forms.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0133-1
By:
- Gonçalves, Rafael S.;
- Tu, Samson W.;
- Nyulas, Csongor I.;
- Tierney, Michael J.;
- Musen, Mark A.
Publication type:
Article
Design of an extensive information representation scheme for clinical narratives.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0135-z
By:
- Deléger, Louise;
- Campillos, Leonardo;
- Ligozat, Anne-Laure;
- Névéol, Aurélie
Publication type:
Article
Ontology-based specification, identification and analysis of perioperative risks.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, n. 1, p. 1, doi. 10.1186/s13326-017-0147-8
By:
- Uciteli, Alexandr;
- Neumann, Juliane;
- Tahar, Kais;
- Saleh, Kutaiba;
- Stucke, Stephan;
- Faulbrück-Röhr, Sebastian;
- Kaeding, André;
- Specht, Martin;
- Schmidt, Tobias;
- Neumuth, Thomas;
- Besting, Andreas;
- Stegemann, Dominik;
- Portheine, Frank;
- Herre, Heinrich
Publication type:
Article
Ontological interpretation of biomedical database content.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0127-z
By:
- Santana da Silva, Filipe;
- Jansen, Ludger;
- Freitas, Fred;
- Schulz, Stefan
Publication type:
Article
Discovering associations between adverse drug events using pattern structures and ontologies.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0137-x
By:
- Personeni, Gabin;
- Bresso, Emmanuel;
- Devignes, Marie-Dominique;
- Dumontier, Michel;
- Smaïl-Tabbone, Malika;
- Coulet, Adrien
Publication type:
Article
NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0128-y
By:
- Martínez-Romero, Marcos;
- Jonquet, Clement;
- O'connor, Martin J.;
- Graybeal, John;
- Pazos, Alejandro;
- Musen, Mark A.
Publication type:
Article
Literature evidence in open targets - a target validation platform.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0131-3
By:
- Kafkas, Şenay;
- Dunham, Ian;
- McEntyre, Johanna
Publication type:
Article
Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0130-4
By:
- Sharma, Deepak K.;
- Solbrig, Harold R.;
- Cui Tao;
- Chunhua Weng;
- Chute, Christopher G.;
- Guoqian Jiang
Publication type:
Article
Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0122-4
By:
- Junguk Hur;
- Özgür, Arzucan;
- Yongqun He
Publication type:
Article
Dead simple OWL design patterns.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0126-0
By:
- Osumi-Sutherland, David;
- Courtot, Melanie;
- Balhoff, James P.;
- Mungall, Christopher
Publication type:
Article
Learning from biomedical linked data to suggest valid pharmacogenes.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0125-1
By:
- Dalleau, Kevin;
- Marzougui, Yassine;
- Da Silva, Sébastien;
- Ringot, Patrice;
- Ndiaye, Ndeye Coumba;
- Coulet, Adrien
Publication type:
Article
MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0123-3
By:
- Yuqing Mao;
- Zhiyong Lu
Publication type:
Article
SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0116-2
By:
- Bokharaeian, Behrouz;
- Diaz, Alberto;
- Taghizadeh, Nasrin;
- Chitsaz, Hamidreza;
- Chavoshinejad, Ramyar
Publication type:
Article
BioFed: federated query processing over life sciences linked open data.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0118-0
By:
- Hasnain, Ali;
- Mehmood, Qaiser;
- Syeda Sana e Zainab;
- Saleem, Muhammad;
- Warren Jr., Claude;
- Zehra, Durre;
- Decker, Stefan;
- Rebholz-Schuhmann, Dietrich
Publication type:
Article
Modulated evaluation metrics for drug-based ontologies.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0124-2
By:
- Amith, Muhammad;
- Cui Tao
Publication type:
Article
Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0115-3
Publication type:
Article
Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0121-5
By:
- Hogan, William R.;
- Hanna, Josh;
- Hicks, Amanda;
- Amirova, Samira;
- Bramblett, Baxter;
- Diller, Matthew;
- Enderez, Rodel;
- Modzelewski, Timothy;
- Vasconcelos, Mirela;
- Delcher, Chris
Publication type:
Article
Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets.
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0120-6
By:
- Jingcheng Du;
- Jun Xu;
- Hsingyi Song;
- Xiangyu Liu;
- Cui Tao
Publication type:
Article
12 years on - Is the NLM medical text indexer still useful and relevant?
Published in:
Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0113-5
By:
- Mork, James;
- Aronson, Alan;
- Demner-Fushman, Dina
Publication type:
Article