Works matching IS 20411480 AND DT 2017

Results: 58

Querying clinical data in HL7 RIM based relational model with morph-RDB.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0155-8

By:

Priyatna, Freddy;
Alonso-Calvo, Raul;
Paraiso-Medina, Sergio;
Corcho, Oscar

Publication type:

Article

Towards refactoring the Molecular Function Ontology with a UML profile for function modeling.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0152-y

By:

Burek, Patryk;
Loebe, Frank;
Herre, Heinrich

Publication type:

Article

PIBAS FedSPARQL: a web-based platform for integration and exploration of bioinformatics datasets.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 75, doi. 10.1186/s13326-017-0151-z

By:

Djokic-Petrovic, Marija;
Cvjetkovic, Vladimir;
Yang, Jeremy;
Zivanovic, Marko;
Wild, David J.

Publication type:

Article

Simplifying drug package leaflets written in Spanish by using word embedding.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0156-7

By:

Segura-Bedmar, Isabel;
Martínez, Paloma

Publication type:

Article

Analysis and visualization of disease courses in a semantically-enabled cancer registry.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0154-9

By:

Esteban-Gil, Angel;
Fernández-Breis, Jesualdo Tomás;
Boeker, Martin

Publication type:

Article

Integrating phenotype ontologies with PhenomeNET.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0167-4

By:

Rodríguez-García, Miguel Ángel;
Gkoutos, Georgios V.;
Schofield, Paul N.;
Hoehndorf, Robert

Publication type:

Article

Identifying genotype-phenotype relationships in biomedical text.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0163-8

By:

Khordad, Maryam;
Mercer, Robert E.

Publication type:

Article

Experiences from the anatomy track in the ontology alignment evaluation initiative.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0166-5

By:

Dragisic, Zlatan;
Ivanova, Valentina;
Huanyu Li;
Lambrix, Patrick

Publication type:

Article

Matching disease and phenotype ontologies in the ontology alignment evaluation initiative.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0162-9

By:

Harrow, Ian;
Jiménez-Ruiz, Ernesto;
Splendiani, Andrea;
Romacker, Martin;
Woollard, Peter;
Markel, Scott;
Alam-Faruque, Yasmin;
Koch, Martin;
Malone, James;
Waaler, Arild

Publication type:

Article

A document-centric approach for developing the tolAPC ontology.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0159-4

By:

Blfgeh, Aisha;
Warrender, Jennifer;
Hilkens, Catharien M. U.;
Lord, Phillip

Publication type:

Article

The bacterial interlocked process ONtology (BiPON): a systemic multi-scale unified representation of biological processes in prokaryotes.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0165-6

By:

Henry, Vincent J.;
Goelzer, Anne;
Ferré, Arnaud;
Fischer, Stephan;
Dinh, Marc;
Loux, Valentin;
Froidevaux, Christine;
Fromion, Vincent

Publication type:

Article

Using semantics for representing experimental protocols.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0160-y

By:

Giraldo, Olga;
García, Alexander;
López, Federico;
Corcho, Oscar

Publication type:

Article

Drug target ontology to classify and integrate drug discovery data.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0161-x

By:

Yu Lin;
Mehta, Saurabh;
Küçük-McGinty, Hande;
Turner, John Paul;
Vidovic, Dusica;
Forlin, Michele;
Koleti, Amar;
Nguyen, Dac-Trung;
Jensen, Lars Juhl;
Guha, Rajarshi;
Mathias, Stephen L.;
Ursu, Oleg;
Stathias, Vasileios;
Duan, Jianbin;
Nabizadeh, Nooshin;
Chung, Caty;
Mader, Christopher;
Visser, Ubbo;
Yang, Jeremy J.;
Bologa, Cristian G.

Publication type:

Article

Entity recognition in the biomedical domain using a hybrid approach.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0157-6

By:

Basaldella, Marco;
Furrer, Lenz;
Tasso, Carlo;
Rinaldi, Fabio

Publication type:

Article

Semantic annotation in biomedicine: the current landscape.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0153-x

By:

Jovanović, Jelena;
Bagheri, Ebrahim

Publication type:

Article

Large-scale online semantic indexing of biomedical articles via an ensemble of multi-label classification models.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0150-0

By:

Papanikolaou, Yannis;
Tsoumakas, Grigorios;
Laliotis, Manos;
Markantonatos, Nikos;
Vlahavas, Ioannis

Publication type:

Article

A histological ontology of the human cardiovascular system.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0158-5

By:

Mazo, Claudia;
Salazar, Liliana;
Corcho, Oscar;
Trujillo, Maria;
Alegre, Enrique

Publication type:

Article

An automatic approach for constructing a knowledge base of symptoms in Chinese.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 66, doi. 10.1186/s13326-017-0145-x

By:

Tong Ruan;
Mengjie Wang;
Jian Sun;
Ting Wang;
Lu Zeng;
Yichao Yin;
Ju Gao

Publication type:

Article

Investigations on factors influencing HPO-based semantic similarity calculation.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 57, doi. 10.1186/s13326-017-0144-y

By:

Jiajie Peng;
Qianqian Li;
Xuequn Shang

Publication type:

Article

A novel method to identify pre-microRNA in various species knowledge base on various species.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 50, doi. 10.1186/s13326-017-0143-z

By:

Tianyi Zhao;
Ningyi Zhang;
Ying Zhang;
Jun Ren;
Peigang Xu;
Zhiyan Liu;
Liang Cheng;
Yang Hu

Publication type:

Article

Dynamically analyzing cell interactions in biological environments using multiagent social learning framework.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 40, doi. 10.1186/s13326-017-0142-0

By:

Chengwei Zhang;
Xiaohong Li;
Shuxin Li;
Zhiyong Feng

Publication type:

Article

Constructing an integrated gene similarity network for the identification of disease genes.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 25, doi. 10.1186/s13326-017-0141-1

By:

Zhen Tian;
Maozu Guo;
Chunyu Wang;
Lin Lin Xing;
Lei Wang;
Yin Zhang

Publication type:

Article

DisSetSim: an online system for calculating similarity between disease sets.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 18, doi. 10.1186/s13326-017-0140-2

By:

Yang Hu;
Lingling Zhao;
Zhiyan Liu;
Hong Ju;
Hongbo Shi;
Peigang Xu;
Yadong Wang;
Liang Cheng

Publication type:

Article

Revealing protein functions based on relationships of interacting proteins and GO terms.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 9, doi. 10.1186/s13326-017-0139-8

By:

Zhixia Teng;
Maozu Guo;
Xiaoyan Liu;
Zhen Tian;
Kai Che

Publication type:

Article

Multiple kernels learning-based biological entity relationship extraction method.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0138-9

By:

Xu Dongliang;
Pan Jingchang;
Wang Bailing

Publication type:

Article

RDFIO: extending Semantic MediaWiki for interoperable biomedical data management.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0136-y

By:

Lampa, Samuel;
Willighagen, Egon;
Kohonen, Pekka;
King, Ali;
Vrandečić, Denny;
Grafström, Roland;
Spjuth, Ola

Publication type:

Article

Towards precision medicine: discovering novel gynecological cancer biomarkers and pathways using linked data.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0146-9

By:

Jha, Alokkumar;
Khan, Yasar;
Mehdi, Muntazir;
Karim, Md Rezaul;
Mehmood, Qaiser;
Zappa, Achille;
Rebholz-Schuhmann, Dietrich;
Sahay, Ratnesh

Publication type:

Article

Ontological interpretation of biomedical database content.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0127-z

By:

Santana da Silva, Filipe;
Jansen, Ludger;
Freitas, Fred;
Schulz, Stefan

Publication type:

Article

Predicting activities of daily living for cancer patients using an ontology-guided machine learning methodology.

Published in:

Journal of Biomedical Semantics, 2017, p. 1, doi. 10.1186/s13326-017-0149-6

By:

Hua Min;
Mobahi, Hedyeh;
Irvin, Katherine;
Avramovic, Sanja;
Wojtusiak, Janusz

Publication type:

Article

Ontology-based specification, identification and analysis of perioperative risks.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, n. 1, p. 1, doi. 10.1186/s13326-017-0147-8

By:

Uciteli, Alexandr;
Neumann, Juliane;
Tahar, Kais;
Saleh, Kutaiba;
Stucke, Stephan;
Faulbrück-Röhr, Sebastian;
Kaeding, André;
Specht, Martin;
Schmidt, Tobias;
Neumuth, Thomas;
Besting, Andreas;
Stegemann, Dominik;
Portheine, Frank;
Herre, Heinrich

Publication type:

Article

Towards achieving semantic interoperability of clinical study data with FHIR.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0148-7

By:

Leroux, Hugo;
Metke-Jimenez, Alejandro;
Lawley, Michael J.

Publication type:

Article

Discovering associations between adverse drug events using pattern structures and ontologies.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0137-x

By:

Personeni, Gabin;
Bresso, Emmanuel;
Devignes, Marie-Dominique;
Dumontier, Michel;
Smaïl-Tabbone, Malika;
Coulet, Adrien

Publication type:

Article

Design of an extensive information representation scheme for clinical narratives.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0135-z

By:

Deléger, Louise;
Campillos, Leonardo;
Ligozat, Anne-Laure;
Névéol, Aurélie

Publication type:

Article

Towards a more molecular taxonomy of disease.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0134-0

By:

Jisoo Park;
Hescott, Benjamin J.;
Slonim, Donna K.

Publication type:

Article

Data- and expert-driven rule induction and filtering framework for functional interpretation and description of gene sets.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0129-x

By:

Gruca, Aleksandra;
Sikora, Marek

Publication type:

Article

Disease Compass- a navigation system for disease knowledge based on ontology and linked data techniques.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0132-2

By:

Kouji Kozaki;
Yuki Yamagata;
Riichiro Mizoguchi;
Takeshi Imai;
Kazuhiko Ohe

Publication type:

Article

An ontology-driven tool for structured data acquisition using Web forms.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0133-1

By:

Gonçalves, Rafael S.;
Tu, Samson W.;
Nyulas, Csongor I.;
Tierney, Michael J.;
Musen, Mark A.

Publication type:

Article

NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0128-y

By:

Martínez-Romero, Marcos;
Jonquet, Clement;
O'connor, Martin J.;
Graybeal, John;
Pazos, Alejandro;
Musen, Mark A.

Publication type:

Article

Literature evidence in open targets - a target validation platform.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0131-3

By:

Kafkas, Şenay;
Dunham, Ian;
McEntyre, Johanna

Publication type:

Article

Building a semantic web-based metadata repository for facilitating detailed clinical modeling in cancer genome studies.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0130-4

By:

Sharma, Deepak K.;
Solbrig, Harold R.;
Cui Tao;
Chunhua Weng;
Chute, Christopher G.;
Guoqian Jiang

Publication type:

Article

Dead simple OWL design patterns.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0126-0

By:

Osumi-Sutherland, David;
Courtot, Melanie;
Balhoff, James P.;
Mungall, Christopher

Publication type:

Article

Modulated evaluation metrics for drug-based ontologies.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0124-2

By:

Amith, Muhammad;
Cui Tao

Publication type:

Article

Learning from biomedical linked data to suggest valid pharmacogenes.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0125-1

By:

Dalleau, Kevin;
Marzougui, Yassine;
Da Silva, Sébastien;
Ringot, Patrice;
Ndiaye, Ndeye Coumba;
Coulet, Adrien

Publication type:

Article

MeSH Now: automatic MeSH indexing at PubMed scale via learning to rank.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0123-3

By:

Yuqing Mao;
Zhiyong Lu

Publication type:

Article

SNPPhenA: a corpus for extracting ranked associations of single-nucleotide polymorphisms and phenotypes from literature.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0116-2

By:

Bokharaeian, Behrouz;
Diaz, Alberto;
Taghizadeh, Nasrin;
Chitsaz, Hamidreza;
Chavoshinejad, Ramyar

Publication type:

Article

BioFed: federated query processing over life sciences linked open data.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0118-0

By:

Hasnain, Ali;
Mehmood, Qaiser;
Syeda Sana e Zainab;
Saleem, Muhammad;
Warren Jr., Claude;
Zehra, Durre;
Decker, Stefan;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

Ontology-based literature mining of E. coli vaccine-associated gene interaction networks.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0122-4

By:

Junguk Hur;
Özgür, Arzucan;
Yongqun He

Publication type:

Article

Large-scale adverse effects related to treatment evidence standardization (LAERTES): an open scalable system for linking pharmacovigilance evidence sources with clinical data.

Published in:: Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0115-3
Publication type:: Article

Therapeutic indications and other use-case-driven updates in the drug ontology: anti-malarials, anti-hypertensives, opioid analgesics, and a large term request.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0121-5

By:

Hogan, William R.;
Hanna, Josh;
Hicks, Amanda;
Amirova, Samira;
Bramblett, Baxter;
Diller, Matthew;
Enderez, Rodel;
Modzelewski, Timothy;
Vasconcelos, Mirela;
Delcher, Chris

Publication type:

Article

Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets.

Published in:

Journal of Biomedical Semantics, 2017, v. 8, p. 1, doi. 10.1186/s13326-017-0120-6

By:

Jingcheng Du;
Jun Xu;
Hsingyi Song;
Xiangyu Liu;
Cui Tao

Publication type:

Article