Works matching IS 20411480 AND DT 2015 AND VI 6

Results: 46

OntoStudyEdit: a new approach for ontology-based representation and management of metadata in clinical and epidemiological research.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, p. 1, doi. 10.1186/s13326-015-0042-0

By:

Uciteli, Alexandr;
Herre, Heinrich

Publication type:

Article

Special issue on bio-ontologies and phenotypes.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, p. 1, doi. 10.1186/s13326-015-0040-2

By:

Soldatova, Larisa N.;
Collier, Nigel;
Oellrich, Anika;
Groza, Tudor;
Verspoor, Karin;
Rocca-Serra, Philippe;
Dumontier, Michel;
Shah, Nigam H.

Publication type:

Article

RDF2Graph a tool to recover, understand and validate the ontology of an RDF resource.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, p. 1, doi. 10.1186/s13326-015-0038-9

By:

van Dam, Jesse C. J.;
Koehorst, Jasper J.;
Schaap, Peter J.;
dos Santos, Vitor A. P. Martins;
Suarez-Diez, Maria

Publication type:

Article

Colil: a database and search service for citation contexts in the life sciences domain.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, p. 1, doi. 10.1186/s13326-015-0037-x

By:

Toyofumi Fujiwara;
Yasunori Yamamoto

Publication type:

Article

Ontology-based representation and analysis of host-Brucella interactions.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0036-y

By:

Yu Lin;
Zuoshuang Xiang;
Yongqun He

Publication type:

Article

Ontology-based representation and analysis of host-Brucella interactions.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, p. 1, doi. 10.1186/s13326-015-0036-y

By:

Yu Lin;
Zuoshuang Xiang;
Yongqun He

Publication type:

Article

My Corporis Fabrica Embryo: An ontology-based 3D spatio-temporal modeling of human embryo development.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0034-0

By:

Rabattu, Pierre-Yves;
Massé, Benoit;
Ulliana, Federico;
Rousset, Marie-Christine;
Rohmer, Damien;
Léon, Jean-Claude;
Palombi, Olivier

Publication type:

Article

My Corporis Fabrica Embryo: An ontology-based 3D spatio-temporal modeling of human embryo development.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, p. 1, doi. 10.1186/s13326-015-0034-0

By:

Rabattu, Pierre-Yves;
Palombi, Olivier;
Massé, Benoit;
Léon, Jean-Claude;
Rohmer, Damien;
Ulliana, Federico;
Rousset, Marie-Christine

Publication type:

Article

owlcpp: a C++ library for working with OWL ontologies.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0035-z

By:

Levin, Mikhail K.;
Cowell, Lindsay G.

Publication type:

Article

A framework for ontology-based question answering with application to parasite immunology.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0029-x

By:

Asiaee, Amir H.;
Minning, Todd;
Doshi, Prashant;
Tarleton, Rick L.

Publication type:

Article

Identification of sex-associated network patterns in Vaccine-Adverse Event Association Network in VAERS.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0032-2

By:

Yuji Zhang;
Puqiang Wu;
Yi Luo;
Cui Tao

Publication type:

Article

Identification of sex-associated network patterns in Vaccine-Adverse Event Association Network in VAERS.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0032-2

By:

Yuji Zhang;
Puqiang Wu;
Yi Luo;
Cui Tao

Publication type:

Article

A framework for ontology-based question answering with application to parasite immunology.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0029-x

By:

Asiaee, Amir H.;
Minning, Todd;
Doshi, Prashant;
Tarleton, Rick L.

Publication type:

Article

Improving the Sequence Ontology terminology for genomic variant annotation.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0030-4

By:

Cunningham, Fiona;
Moore, Barry;
Ruiz-Schultz, Nicole;
Ritchie, Graham R. S.;
Eilbeck, Karen

Publication type:

Article

KneeTex: an ontology-driven system for information extraction from MRI reports.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0033-1

By:

Spasić, Irena;
Zhao, Bo;
Jones, Christopher B.;
Button, Kate

Publication type:

Article

Development of an Ontology for Periodontitis.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0028-y

By:

Asami Suzuki;
Takako Takai-Igarashi;
Jun Nakaya;
Hiroshi Tanaka

Publication type:

Article

Discovering relations between indirectly connected biomedical concepts.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0021-5

By:

Weissenborn, Dirk;
Schroeder, Michael;
Tsatsaronis, George

Publication type:

Article

Ambiguity and variability of database and software names in bioinformatics.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0026-0

By:

Duck, Geraint;
Kovacevic, Aleksandar;
Robertson, David L.;
Stevens, Robert;
Nenadic, Goran

Publication type:

Article

Networks of neuroinjury semantic predications to identify biomarkers for mild traumatic brain injury.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0022-4

By:

Cairelli, Michael J.;
Fiszman, Marcelo;
Han Zhang;
Rindflesch, Thomas C.

Publication type:

Article

Region Evolution eXplorer - A tool for discovering evolution trends in ontology regions.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0020-6

By:

Christen, Victor;
Hartung, Michael;
Groß, Anika

Publication type:

Article

Concept selection for phenotypes and diseases using learn to rank.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0019-z

By:

Collier, Nigel;
Oellrich, Anika;
Groza, Tudor

Publication type:

Article

Evaluating drug-drug interaction information in NDF-RT and DrugBank.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0018-0

By:

Peters, Lee B.;
Bahr, Nathan;
Bodenreider, Olivier

Publication type:

Article

Exploring adverse drug events at the class level.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0017-1

By:

Winnenburg, Rainer;
Sorbello, Alfred;
Bodenreider, Olivier

Publication type:

Article

Developing VISO: Vaccine Information Statement Ontology for patient education.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0016-2

By:

Amith, Muhammad;
Yang Gong;
Cunningham, Rachel;
Boom, Julie;
Cui Tao

Publication type:

Article

Formalizing biomedical concepts from textual definitions.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0015-3

By:

Petrova, Alina;
Yue Ma;
Tsatsaronis, George;
Kissa, Maria;
Distel, Felix;
Baader, Franz;
Schroeder, Michael

Publication type:

Article

Semantic enrichment of longitudinal clinical study data using the CDISC standards and the semantic statistics vocabularies.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0012-6

By:

Leroux, Hugo;
Lefort, Laurent

Publication type:

Article

Capturing domain knowledge from multiple sources: the rare bone disorders use case.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0008-2

By:

Groza, Tudor;
Tudorache, Tania;
Robinson, Peter N.;
Zankl, Andreas

Publication type:

Article

Implementation of linked data in the life sciences at BioHackathon 2011.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/2041-1480-6-3

By:

Aoki-Kinoshita, Kiyoko F.;
Kinjo, Akira R.;
Mizuki Morita;
Yoshinobu Igarashi;
Yi-an Chen;
Yasumasa Shigemoto;
Takatomo Fujisawa;
Yukie Akune;
Takeo Katoda;
Anna Kokubu;
Takaaki Mori;
Mitsuteru Nakao;
Shuichi Kawashima;
Shinobu Okamoto;
Toshiaki Katayama;
Soichi Ogishima

Publication type:

Article

Annotation-based feature extraction from sets of SBML models.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0014-4

By:

Alm, Rebekka;
Waltemath, Dagmar;
Wolfien, Markus;
Wolkenhauer, Olaf;
Henkel, Ron

Publication type:

Article

Linking gene expression to phenotypes via pathway information.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0013-5

By:

Papatheodorou, Irene;
Oellrich, Anika;
Smedley, Damian

Publication type:

Article

Automated concept and relationship extraction for the semi-automated ontology management (SEAM) system.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0011-7

By:

Doing-Harris, Kristina;
Livnat, Yarden;
Meystre, Stephane

Publication type:

Article

Development and validation of a classification approach for extracting severity automatically from electronic health records.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0010-8

By:

Boland, Mary Regina;
Tatonetti, Nicholas P.;
Hripcsak, George

Publication type:

Article

Using description logics to evaluate the consistency of drug-class membership relations in NDF-RT.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0007-3

By:

Winnenburg, Rainer;
Mortensen, Jonathan M.;
Bodenreider, Olivier

Publication type:

Article

Expanding the mammalian phenotype ontology to support automated exchange of high throughput mouse phenotyping data generated by large-scale mouse knockout screens.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0009-1

By:

Smith, Cynthia L.;
Eppig, Janan T.

Publication type:

Article

Evaluating a variety of text-mined features for automatic protein function prediction with GOstruct.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0006-4

By:

Funk, Christopher S.;
Kahanda, Indika;
Ben-Hur, Asa;
Verspoor, Karin M.

Publication type:

Article

eNanoMapper: harnessing ontologies to enable data integration for nanomaterial risk assessment.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0005-5

By:

Hastings, Janna;
Jeliazkova, Nina;
Owen, Gareth;
Tsiliki, Georgia;
Munteanu, Cristian R.;
Steinbeck, Christoph;
Willighagen, Egon

Publication type:

Article

Supporting the annotation of chronic obstructive pulmonary disease (COPD) phenotypes with text mining workflows.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0004-6

By:

Xiao Fu;
Batista-Navarro, Riza;
Rak, Rafal;
Ananiadou, Sophia

Publication type:

Article

Section level search functionality in Europe PMC.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0003-7

By:

Kafkas, Şenay;
Xingjun Pi;
Marinos, Nikos;
Talo, Francesco;
Morrison, Andrew;
McEntyre, Johanna R.

Publication type:

Article

Similarity-based search of model organism, disease and drug effect phenotypes.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/s13326-015-0001-9

By:

Hoehndorf, Robert;
Gruenberger, Michael;
Gkoutos, Georgios V.;
Schofield, Paul N.

Publication type:

Article

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/2041-1480-6-2

By:

Junguk Hur;
Özgür, Arzucan;
Zuoshuang Xiang;
Yongqun He

Publication type:

Article

Database citation in supplementary data linked to Europe PubMed Central full text biomedical articles.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/2041-1480-6-1

By:

Kafkas, Şenay;
Jee-Hyub Kim;
Xingjun Pi;
McEntyre, Johanna R.

Publication type:

Article

Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 62, doi. 10.1186/2041-1480-6-4

By:

Zuoshuang Xiang;
Jie Zheng;
Yu Lin;
Yongqun He

Publication type:

Article

Implementation of linked data in the life sciences at BioHackathon 2011.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 38, doi. 10.1186/2041-1480-6-3

By:

Aoki-Kinoshita, Kiyoko F.;
Kinjo, Akira R.;
Mizuki Morita;
Yoshinobu Igarashi;
Yi-an Chen;
Yasumasa Shigemoto;
Takatomo Fujisawa;
Yukie Akune;
Takeo Katoda;
Anna Kokubu;
Takaaki Mori;
Mitsuteru Nakao;
Shuichi Kawashima;
Shinobu Okamoto;
Toshiaki Katayama;
Soichi Ogishima

Publication type:

Article

Development and application of an interaction network ontology for literature mining of vaccine-associated gene-gene interactions.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 18, doi. 10.1186/2041-1480-6-2

By:

Hur, Junguk;
Özgür, Arzucan;
Zuoshuang Xiang;
Yongqun He

Publication type:

Article

Database citation in supplementary data linked to Europe PubMed Central full text biomedical articles.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/2041-1480-6-1

By:

Kafkas, Şenay;
Jee-Hyub Kim;
Xingjun Pi;
McEntyre, Johanna R.

Publication type:

Article

Ontorat: automatic generation of new ontology terms, annotations, and axioms based on ontology design patterns.

Published in:

Journal of Biomedical Semantics, 2015, v. 6, n. 1, p. 1, doi. 10.1186/2041-1480-6-4

By:

Zuoshuang Xiang;
Jie Zheng;
Yu Lin;
Yongqun He

Publication type:

Article