Works matching IS 20411480 AND DT 2014 AND VI 5 AND IP 1

Results: 33

Comparative analysis of knowledge representation and reasoning requirements across a range of life sciences textbooks.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 54, doi. 10.1186/2041-1480-5-51

By:

Chaudhri, Vinay K.;
Elenius, Daniel;
Goldenkranz, Andrew;
Gong, Allison;
Martone, Maryann E.;
Webb, William;
Yorke-Smith, Neil

Publication type:

Article

AISO: Annotation of Image Segments with Ontologies.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 42, doi. 10.1186/2041-1480-5-50

By:

Lingutla, Nikhil Tej;
Preece, Justin;
Todorovic, Sinisa;
Cooper, Laurel;
Moore, Laura;
Jaiswal, Pankaj

Publication type:

Article

A use case study on late stent thrombosis for ontology-based temporal reasoning and analysis.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 24, doi. 10.1186/2041-1480-5-49

By:

Kim Clark;
Sharma, Deepak;
Rui Qin;
Chute, Christopher G.;
Cui Tao

Publication type:

Article

TermGenie - a web-application for pattern-based ontology class generation.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-48

By:

Dietze, Heiko;
Berardini, Tanya Z.;
Foulger, Rebecca E.;
Hill, David P.;
Lomax, Jane;
Osumi-Sutherland, David;
Roncaglia, Paola;
Mungall, Christopher J.

Publication type:

Article

TopFed: TCGA tailored federated query processing and linking to LOD.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-47

By:

Saleem, Muhammad;
Ngonga Ngomo, Axel-Cyrille;
Padmanabhuni, Shanmukha S.;
Iqbal, Aftab;
Decker, Stefan;
Almeida, Jonas S.;
Deus, Helena F.

Publication type:

Article

Automatically exposing OpenLifeData via SADI semantic Web Services.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-46

By:

Rodríguez González, Alejandro;
Garcia, Adrian;
Wilkinson, Mark D.;
Callahan, Alison;
Dumontier, Michel;
Cruz-Toledo, José;
Egaña Aranguren, Mikel

Publication type:

Article

Why functions are not special dispositions: an improved classification of realizables for top-level ontologies.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 2, doi. 10.1186/2041-1480-5-27

By:

Röhl, Johannes;
Jansen, Ludger

Publication type:

Article

Generalising semantic category disambiguation with large lexical resources for fun and profit.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-26

By:

Pontus Stenetorp;
Pyysalo, Sampo;
Ananiadou, Sophia;
sujii, Jun'ichi T.

Publication type:

Article

The Software Ontology (SWO): a resource for reproducibility in biomedical data analysis, curation and digital preservation.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 2, doi. 10.1186/2041-1480-5-25

By:

Malone, James;
Brown, Andy;
Lister, Allyson L.;
Ison, Jon;
Hull, Duncan;
Parkinson, Helen;
Stevens, Robert

Publication type:

Article

Terminology extraction from medical texts in Polish.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-24

By:

Marciniak, Małgorzata;
Mykowiecka, Agnieszka

Publication type:

Article

An ontological modeling approach for abnormal states and its application in the medical domain.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 2, doi. 10.1186/2041-1480-5-23

By:

Yuki Yamagata;
Kouji Kozaki;
Takeshi Imai;
Kazuhiko Ohe;
Riichiro Mizoguchi

Publication type:

Article

Mining characteristics of epidemiological studies from Medline: a case study in obesity.

Published in:

2014

By:

Karystianis, George;
Buchan, Iain;
Nenadic, Goran

Publication type:

Case Study

Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-21

By:

Haendel, Melissa A.;
Balhoff, James P.;
Bastian, Frederic B.;
Blackburn, David C.;
Blake, Judith A.;
Bradford, Yvonne;
Comte, Aurelie;
Dahdul, Wasila M.;
Dececchi, Thomas A.;
Druzinsky, Robert E.;
Hayamizu, Terry F.;
Ibrahim, Nizar;
Lewis, Suzanna E.;
Mabee, Paula M.;
Niknejad, Anne;
Robinson-Rechavi, Marc;
Sereno, Paul C.;
Mungall, Christopher J.

Publication type:

Article

My Corporis Fabrica: an ontology-based tool for reasoning and querying on complex anatomical models.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-20

By:

Palombi, Olivier;
Ulliana, Federico;
Favier, Valentin;
Léon, Jean-Claude;
Rousset, Marie-Christine

Publication type:

Article

Thematic series on biomedical ontologies in JBMS: challenges and new directions.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-15

By:

Hoehndorf, Robert;
Haendel, Melissa;
Stevens, Robert;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

A 2013 workshop: vaccine and drug ontology studies (VDOS 2013).

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-16

By:

Cui Tao;
Yongqun He;
Arabandi, Sivaram

Publication type:

Article

Exploitation of semantic methods to cluster pharmacovigilance terms.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-18

By:

Dupuch, Marie;
Dupuch, Laëtitia;
Hamon, Thierry;
Grabar, Natalia

Publication type:

Article

A rule-based ontological framework for the classification of molecules.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-17

By:

Magka, Despoina;
Krötzsch, Markus;
Horrocks, Ian

Publication type:

Article

Variation ontology: annotator guide.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-9

By:

Vihinen, Mauno

Publication type:

Article

The ontology of genetic susceptibility factors (OGSF) and its application in modeling genetic susceptibility to vaccine adverse events.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-19

By:

Yu Lin;
Yongqun He

Publication type:

Article

The semanticscience integrated ontology (SIO) for biomedical research and knowledge discovery.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-14

By:

Dumontier, Michel;
Baker, Christopher J. O .;
Baran, Joachim;
Callahan, Alison;
Chepelev, Leonid;
Cruz-Toledo, José;
Del Rio, Nicholas R.;
Duck, Geraint;
Furlong, Laura I.;
Keath, Nichealla;
Klassen, Dana;
McCusker, James P.;
Queralt-Rosinach, Núria;
Samwald, Matthias;
Villanueva-Rosales, Natalia;
Wilkinson, Mark D.;
Hoehndorf, Robert

Publication type:

Article

Panacea, a semantic-enabled drug recommendations discovery framework.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-13

By:

Doulaverakis, Charalampos;
Nikolaidis, George;
Kleontas, Athanasios;
Kompatsiaris, Ioannis

Publication type:

Article

The zebrafish anatomy and stage ontologies: representing the anatomy and development of Danio rerio.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-12

By:

Van Slyke, Ceri E.;
Bradford, Yvonne M.;
Westerfield, Monte;
Haendel, Melissa A.

Publication type:

Article

Benchmarking infrastructure for mutation text mining.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-11

By:

Klein, Artjom;
Riazanov, Alexandre;
Hindle, Matthew M.;
Baker, Christopher J. O.

Publication type:

Article

Mining images in biomedical publications: Detection and analysis of gel diagrams.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-10

By:

Kuhn, Tobias;
Levente Nagy, Mate;
ThaiBinh Luong;
Krauthammer, Michael

Publication type:

Article

Semantic interestingness measures for discovering association rules in the skeletal Dysplasia domain.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-8

By:

Paul, Razan;
Groza, Tudor;
Hunter, Jane;
Zankl, Andreas

Publication type:

Article

The pathway ontology - updates and applications.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-7

By:

Petri, Victoria;
Jayaraman, Pushkala;
Tutaj, Marek;
Thomas Hayman, G.;
Smith, Jennifer R.;
Pons, Jeff De;
Laulederkind, Stanley J. F.;
Lowry, Timothy F.;
Nigam, Rajni;
Shur-Jen Wang;
Shimoyama, Mary;
Dwinell, Melinda R.;
Munzenmaier, Diane H.;
Worthey, Elizabeth A.;
Jacob, Howard J.

Publication type:

Article

Synonym extraction and abbreviation expansion with ensembles of semantic spaces.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-6

By:

Henriksson, Aron;
Moen, Hans;
Skeppstedt, Maria;
Daudaravičius, Vidas;
Duneld, Martin

Publication type:

Article

BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-5

By:

Toshiaki Katayama;
Wilkinson, Mark D.;
Kiyoko F. Aoki-Kinoshita;
Shuichi Kawashima;
Yasunori Yamamoto;
Atsuko Yamaguchi;
Shinobu Okamoto;
Shin Kawano;
Jin-Dong Kim;
Yue Wang;
Hongyan Wu;
Yoshinobu Kano;
Hiromasa Ono;
Hidemasa Bono;
Kocbek, Simon;
Aerts, Jan;
Yukie Akune;
Antezana, Erick;
Kazuharu Arakawa;
Aranda, Bruno

Publication type:

Article

The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-4

By:

Pesquita, Catia;
Ferreira, João D.;
Couto, Francisco M.;
Silva, Mário J.

Publication type:

Article

Detecting concept mentions in biomedical text using hidden Markov model: multiple concept types at once or one at a time?

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-3

By:

Torii, Manabu;
Wagholikar, Kavishwar;
Hongfang Liu

Publication type:

Article

The languages of health in general practice electronic patient records: a Zipf's law analysis.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-2

By:

Kalankesh, Leila R.;
New, John P.;
Baker, Patricia G.;
Brass, Andy

Publication type:

Article

Neuroanatomical domain of the foundational model of anatomy ontology.

Published in:

Journal of Biomedical Semantics, 2014, v. 5, n. 1, p. 1, doi. 10.1186/2041-1480-5-1

By:

Nolan Nichols, B.;
Mejino, Jose L. V.;
Detwiler, Landon T.;
Nilsen, Trond T.;
Martone, Maryann E.;
Turner, Jessica A.;
Rubin, Daniel L.;
Brinkley, James F.

Publication type:

Article