Works matching IS 20411480 AND DT 2013 AND VI 4 AND IP 1

Results: 40

Ontology of physics for biology: representing physical dependencies as a basis for biological processes.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-41
By:
- Cook, Daniel L.;
- Neal, Maxwell L.;
- Bookstein, Fred L.;
- Gennari, John H.
Publication type:
Article
The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-40
By:
- Marcos, Erica;
- Bin Zhao;
- Yongqun He
Publication type:
Article
Introducing glycomics data into the Semantic Web.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-39
By:
- Kiyoko F. Aoki-Kinoshita;
- Bolleman, Jerven;
- Campbell, Matthew P.;
- Shin Kawano;
- Jin-Dong Kim;
- Lütteke, Thomas;
- Masaaki Matsubara;
- Shujiro Okuda;
- Ranzinger, Rene;
- Hiromichi Sawaki;
- Toshihide Shikanai;
- Daisuke Shinmachi;
- Yoshinori Suzuki;
- Toukach, Philip;
- Issaku Yamada;
- Packer, Nicolle H.;
- Hisashi Narimatsu
Publication type:
Article
Representing annotation compositionality and provenance for the Semantic Web.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-38
By:
- Livingston, Kevin M.;
- Bada, Michael;
- Hunter, Lawrence E.;
- Verspoor, Karin
Publication type:
Article
PAV ontology: provenance, authoring and versioning.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-37
By:
- Ciccarese, Paolo;
- Soiland-Reyes, Stian;
- Belhajjame, Khalid;
- Gray, Alasdair J. G.;
- Goble, Carole;
- Clark, Tim
Publication type:
Article
Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-36
By:
- Nigam, Rajni;
- Munzenmaier, Diane H.;
- Worthey, Elizabeth A.;
- Dwinell, Melinda R.;
- Shimoyama, Mary;
- Jacob, Howard J.
Publication type:
Article
HuPSON: the human physiology simulation ontology.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-35
By:
- Gündel, Michaela;
- Younesi, Erfan;
- Malhotra, Ashutosh;
- Jiali Wang;
- Hui Li;
- Bijun Zhang;
- de Bono, Bernard;
- Mevissen, Heinz-Theodor;
- Hofmann-Apitius, Martin
Publication type:
Article
The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-34
By:
- Midford, Peter E.;
- Dececchi, Thomas Alex;
- Balhoff, James P.;
- Dahdul, Wasila M.;
- Ibrahim, Nizar;
- Lapp, Hilmar;
- Lundberg, John G.;
- Mabee, Paula M.;
- Sereno, Paul C.;
- Westerfield, Monte;
- Vision, Todd J.;
- Blackburn, David C.
Publication type:
Article
Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-33
By:
- Yuji Zhang;
- Cui Tao;
- Yongqun He;
- Pradip Kanjamala;
- Hongfang Liu
Publication type:
Article
The Drosophila anatomy ontology.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-32
By:
- Costa, Marta;
- Reeve, Simon;
- Grumbling, Gary;
- Osumi-Sutherland, David
Publication type:
Article
Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-31
By:
- Segerdell, Erik;
- Ponferrada, Virgilio G.;
- James-Zorn, Christina;
- Burns, Kevin A.;
- Fortriede, Joshua D.;
- Dahdul, Wasila M.;
- Vize, Peter D.;
- Zorn, Aaron M.
Publication type:
Article
Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-28
By:
- Rebholz-Schuhmann, Dietrich;
- Kafkas, Senay;
- Jee-Hyub Kim;
- Chen Li;
- Yepes, Antonio Jimeno;
- Hoehndorf, Robert;
- Backofen, Rolf;
- Lewin, Ian
Publication type:
Article
The Drosophila phenotype ontology.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-30
By:
- Osumi-Sutherland, David;
- Marygold, Steven J.;
- Millburn, Gillian H.;
- McQuilton, Peter A.;
- Ponting, Laura;
- Stefancsik, Raymund;
- Falls, Kathleen;
- Brown, Nicholas H.;
- Gkoutos, Georgios V.
Publication type:
Article
Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-29
By:
- Oellrich, Anika;
- Grabmüller, Christoph;
- Rebholz-Schuhmann, Dietrich
Publication type:
Article
FlexiTerm: a flexible term recognition method.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-27
By:
- Spasić, Irena;
- Greenwood, Mark;
- Preece, Alun;
- Francis, Nick;
- Elwyn, Glyn
Publication type:
Article
The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-26
By:
- Smith, Jennifer R.;
- Park, Carissa A.;
- Nigam, Rajni;
- Laulederkind, Stanley J. F.;
- Thomas Hayman, G.;
- Shur-Jen Wang;
- Lowry, Timothy F.;
- Petri, Victoria;
- Pons, Jeff De;
- Tutaj, Marek;
- Weisong Liu;
- Worthey, Elizabeth A.;
- Shimoyama, Mary;
- Dwinell, Melinda R.
Publication type:
Article
Using ontologies to study cell transitions.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-25
By:
- Fuellen, Georg;
- Jansen, Ludger;
- Leser, Ulf;
- Kurtz, Andreas
Publication type:
Article
Function of dynamic models in systems biology: linking structure to behaviour.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-24
By:
- Knüpfer, Christian;
- Beckstein, Clemens
Publication type:
Article
Developing a semantically rich ontology for the biobank-administration domain.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-23
By:
- Brochhausen, Mathias;
- Fransson, Martin N.;
- Kanaskar, Nitin V.;
- Eriksson, Mikael;
- Merino-Martinez, Roxana;
- Hall, Roger A.;
- Norlin, Loreana;
- Kjellqvist, Sanela;
- Hortlund, Maria;
- Topaloglu, Umit;
- Hogan, William R.;
- Litton, Jan-Eric
Publication type:
Article
Functional tissue units and their primary tissue motifs in multi-scale physiology.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-22
By:
- Bono, Bernard de;
- Grenon, Pierre;
- Baldock, Richard;
- Hunter, Peter
Publication type:
Article
Enrichment analysis applied to disease prognosis.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-21
By:
- Machado, Catia M.;
- Freitas, Ana T.;
- Couto, Francisco M.
Publication type:
Article
The mouse pathology ontology, MPATH; structure and applications.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-18
By:
- Schofield, Paul N.;
- Sundberg, John P.;
- Sundberg, Beth A.;
- McKerlie, Colin;
- Gkoutos, Georgios V.
Publication type:
Article
IDOMAL: the malaria ontology revisited.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-16
By:
- Topalisx, Pantelis;
- Mitraka, Elvira;
- Dritsou, Vicky;
- Dialynas, Emmanuel;
- Louis, Christos
Publication type:
Article
The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-13
By:
- Carissa A Park;
- Bello, Susan M.;
- Smith, Cynthia L.;
- Zhi-Liang Hu;
- Munzenmaier, Diane H.;
- Nigam, Rajni;
- Smith, Jennifer R.;
- Shimoyama, Mary;
- Eppig, Janan T.;
- Reecy, James M.
Publication type:
Article
A unified approach for debugging is-a structure and mappings in networked taxonomies.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-10
By:
- Lambrix, Patrick;
- Ivanova, Valentina
Publication type:
Article
A semantic-based method for extracting concept definitions from scientific publications: evaluation in the autism phenotype domain.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-14
By:
- Hassanpour, Saeed;
- O'Connor, Martin J.;
- Das, Amar K.
Publication type:
Article
BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-12
By:
- Pérez, María;
- Berlanga, Rafael;
- Sanz, Ismael;
- Aramburu, María José
Publication type:
Article
Semantic querying of relational data for clinical intelligence: a semantic web services-based approach.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-9
By:
- Riazanov, Alexandre;
- Klein, Artjom;
- Shaban-Nejad, Arash;
- Rose, Gregory W.;
- Forster, Alan J.;
- Buckeridge, David L.;
- Baker, Christopher J.O.
Publication type:
Article
Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-5
By:
- Boyce, Richard D.;
- Horn, John R.;
- Hassanzadeh, Oktie;
- de Waard, Anita;
- Schneider, Jodi;
- Luciano, Joanne S.;
- Rastegar-Mojarad, Majid;
- Liakata, Maria
Publication type:
Article
Using Semantic Web technology to support icd-11 textual definitions authoring.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-11
By:
- Jiang, Guoqian;
- Solbrig, Harold R.;
- Chute, Christopher G.
Publication type:
Article
OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-2
By:
- Aranguren, Mikel Egaña;
- Fernández-Breis, Jesualdo Tomás;
- Mungall, Chris;
- Antezana, Erick;
- González2, Alejandro Rodríguez;
- Wilkinson, Mark D.
Publication type:
Article
Deploying and sharing U-Compare workflows as web services.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-7
By:
- Kontonatsios, Georgios;
- Korkontzelos, Ioannis;
- Kolluru, BalaKrishna;
- Thompson, Paul;
- Ananiadou, Sophia
Publication type:
Article
Building Linked Open Data towards integration of biomedical scientific literature with DBpedia.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-8
By:
- Yamamoto, Yasunori;
- Yamaguchi, Atsuko;
- Yonezawa, Akinori
Publication type:
Article
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-6
By:
- Katayama, Toshiaki;
- Wilkinson, Mark D.;
- Micklem, Gos;
- Kawashima, Shuichi;
- Yamaguchi, Atsuko;
- Nakao, Mitsuteru;
- Yamamoto, Yasunori;
- Okamoto, Shinobu;
- Oouchida, Kenta;
- Hong-Woo Chun;
- Aerts, Jan;
- Afzal, Hammad;
- Antezana, Erick;
- Arakawa, Kazuharu;
- Aranda, Bruno;
- Belleau, Francois;
- Bolleman, Jerven;
- Bonnal, Raoul J. P.;
- Chapman, Brad;
- Cock, Peter J. A.
Publication type:
Article
Pooling annotated corpora for clinical concept extraction.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-3
By:
- Wagholikar, Kavishwar B.;
- Torii, Manabu;
- Jonnalagadda, Siddhartha R.;
- Hongfang Liu
Publication type:
Article
A common type system for clinical natural language processing.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-1
By:
- Wu, Stephen T.;
- Kaggal, Vinod C.;
- Dligach, Dmitriy;
- Masanz, James J.;
- Chen, Pei;
- Becker, Lee;
- Chapman, Wendy W.;
- Savova, Guergana K.;
- Hongfang Liu;
- Chute, Christopher G.
Publication type:
Article
Building a drug ontology based on RxNorm and other sources.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-44
By:
- Hanna, Josh;
- Joseph, Eric;
- Brochhausen, Mathias;
- Hogan, William R.
Publication type:
Article
The environment ontology: contextualising biological and biomedical entities.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-43
By:
- Buttigieg, Pier Luigi;
- Morrison, Norman;
- Smith, Barry;
- Mungall, Christopher J.;
- Lewis, Suzanna E.
Publication type:
Article
The neurological disease ontology.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-42
By:
- Jensen, Mark;
- Cox, Alexander P.;
- Chaudhry, Naveed;
- Ng, Marcus;
- Sule, Donat;
- Duncan, William;
- Weinstock-Guttman, Bianca;
- Smith, Barry;
- Ruttenberg, Alan;
- Szigeti, Kinga;
- Diehl, Alexander D.;
- Ray, Patrick
Publication type:
Article
MAPI: a software framework for distributed biomedical applications.
Published in:
Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-4
By:
- Trelles, Oswaldo;
- Karlsson, Johan
Publication type:
Article