Works matching IS 20411480 AND DT 2013 AND VI 4 AND IP 1

Results: 40

Ontology of physics for biology: representing physical dependencies as a basis for biological processes.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-41

By:

Cook, Daniel L.;
Neal, Maxwell L.;
Bookstein, Fred L.;
Gennari, John H.

Publication type:

Article

The Ontology of Vaccine Adverse Events (OVAE) and its usage in representing and analyzing adverse events associated with US-licensed human vaccines.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-40

By:

Marcos, Erica;
Bin Zhao;
Yongqun He

Publication type:

Article

The vertebrate taxonomy ontology: a framework for reasoning across model organism and species phenotypes.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-34

By:

Midford, Peter E.;
Dececchi, Thomas Alex;
Balhoff, James P.;
Dahdul, Wasila M.;
Ibrahim, Nizar;
Lapp, Hilmar;
Lundberg, John G.;
Mabee, Paula M.;
Sereno, Paul C.;
Westerfield, Monte;
Vision, Todd J.;
Blackburn, David C.

Publication type:

Article

Representing annotation compositionality and provenance for the Semantic Web.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-38

By:

Livingston, Kevin M.;
Bada, Michael;
Hunter, Lawrence E.;
Verspoor, Karin

Publication type:

Article

PAV ontology: provenance, authoring and versioning.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-37

By:

Ciccarese, Paolo;
Soiland-Reyes, Stian;
Belhajjame, Khalid;
Gray, Alasdair J. G.;
Goble, Carole;
Clark, Tim

Publication type:

Article

Rat Strain Ontology: structured controlled vocabulary designed to facilitate access to strain data at RGD.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-36

By:

Nigam, Rajni;
Munzenmaier, Diane H.;
Worthey, Elizabeth A.;
Dwinell, Melinda R.;
Shimoyama, Mary;
Jacob, Howard J.

Publication type:

Article

HuPSON: the human physiology simulation ontology.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-35

By:

Gündel, Michaela;
Younesi, Erfan;
Malhotra, Ashutosh;
Jiali Wang;
Hui Li;
Bijun Zhang;
de Bono, Bernard;
Mevissen, Heinz-Theodor;
Hofmann-Apitius, Martin

Publication type:

Article

Introducing glycomics data into the Semantic Web.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-39

By:

Kiyoko F. Aoki-Kinoshita;
Bolleman, Jerven;
Campbell, Matthew P.;
Shin Kawano;
Jin-Dong Kim;
Lütteke, Thomas;
Masaaki Matsubara;
Shujiro Okuda;
Ranzinger, Rene;
Hiromichi Sawaki;
Toshihide Shikanai;
Daisuke Shinmachi;
Yoshinori Suzuki;
Toukach, Philip;
Issaku Yamada;
Packer, Nicolle H.;
Hisashi Narimatsu

Publication type:

Article

Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-33

By:

Yuji Zhang;
Cui Tao;
Yongqun He;
Pradip Kanjamala;
Hongfang Liu

Publication type:

Article

The Drosophila anatomy ontology.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-32

By:

Costa, Marta;
Reeve, Simon;
Grumbling, Gary;
Osumi-Sutherland, David

Publication type:

Article

Enhanced XAO: the ontology of Xenopus anatomy and development underpins more accurate annotation of gene expression and queries on Xenbase.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-31

By:

Segerdell, Erik;
Ponferrada, Virgilio G.;
James-Zorn, Christina;
Burns, Kevin A.;
Fortriede, Joshua D.;
Dahdul, Wasila M.;
Vize, Peter D.;
Zorn, Aaron M.

Publication type:

Article

The Drosophila phenotype ontology.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-30

By:

Osumi-Sutherland, David;
Marygold, Steven J.;
Millburn, Gillian H.;
McQuilton, Peter A.;
Ponting, Laura;
Stefancsik, Raymund;
Falls, Kathleen;
Brown, Nicholas H.;
Gkoutos, Georgios V.

Publication type:

Article

Automatically transforming pre- to post-composed phenotypes: EQ-lising HPO and MP.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-29

By:

Oellrich, Anika;
Grabmüller, Christoph;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

Evaluating gold standard corpora against gene/protein tagging solutions and lexical resources.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-28

By:

Rebholz-Schuhmann, Dietrich;
Kafkas, Senay;
Jee-Hyub Kim;
Chen Li;
Yepes, Antonio Jimeno;
Hoehndorf, Robert;
Backofen, Rolf;
Lewin, Ian

Publication type:

Article

FlexiTerm: a flexible term recognition method.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-27

By:

Spasić, Irena;
Greenwood, Mark;
Preece, Alun;
Francis, Nick;
Elwyn, Glyn

Publication type:

Article

The clinical measurement, measurement method and experimental condition ontologies: expansion, improvements and new applications.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-26

By:

Smith, Jennifer R.;
Park, Carissa A.;
Nigam, Rajni;
Laulederkind, Stanley J. F.;
Thomas Hayman, G.;
Shur-Jen Wang;
Lowry, Timothy F.;
Petri, Victoria;
Pons, Jeff De;
Tutaj, Marek;
Weisong Liu;
Worthey, Elizabeth A.;
Shimoyama, Mary;
Dwinell, Melinda R.

Publication type:

Article

Using ontologies to study cell transitions.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-25

By:

Fuellen, Georg;
Jansen, Ludger;
Leser, Ulf;
Kurtz, Andreas

Publication type:

Article

Function of dynamic models in systems biology: linking structure to behaviour.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-24

By:

Knüpfer, Christian;
Beckstein, Clemens

Publication type:

Article

Developing a semantically rich ontology for the biobank-administration domain.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-23

By:

Brochhausen, Mathias;
Fransson, Martin N.;
Kanaskar, Nitin V.;
Eriksson, Mikael;
Merino-Martinez, Roxana;
Hall, Roger A.;
Norlin, Loreana;
Kjellqvist, Sanela;
Hortlund, Maria;
Topaloglu, Umit;
Hogan, William R.;
Litton, Jan-Eric

Publication type:

Article

Functional tissue units and their primary tissue motifs in multi-scale physiology.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-22

By:

Bono, Bernard de;
Grenon, Pierre;
Baldock, Richard;
Hunter, Peter

Publication type:

Article

Enrichment analysis applied to disease prognosis.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-21

By:

Machado, Catia M.;
Freitas, Ana T.;
Couto, Francisco M.

Publication type:

Article

The mouse pathology ontology, MPATH; structure and applications.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-18

By:

Schofield, Paul N.;
Sundberg, John P.;
Sundberg, Beth A.;
McKerlie, Colin;
Gkoutos, Georgios V.

Publication type:

Article

IDOMAL: the malaria ontology revisited.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-16

By:

Topalisx, Pantelis;
Mitraka, Elvira;
Dritsou, Vicky;
Dialynas, Emmanuel;
Louis, Christos

Publication type:

Article

The Vertebrate Trait Ontology: a controlled vocabulary for the annotation of trait data across species.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-13

By:

Carissa A Park;
Bello, Susan M.;
Smith, Cynthia L.;
Zhi-Liang Hu;
Munzenmaier, Diane H.;
Nigam, Rajni;
Smith, Jennifer R.;
Shimoyama, Mary;
Eppig, Janan T.;
Reecy, James M.

Publication type:

Article

A unified approach for debugging is-a structure and mappings in networked taxonomies.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-10

By:

Lambrix, Patrick;
Ivanova, Valentina

Publication type:

Article

A semantic-based method for extracting concept definitions from scientific publications: evaluation in the autism phenotype domain.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-14

By:

Hassanpour, Saeed;
O'Connor, Martin J.;
Das, Amar K.

Publication type:

Article

BioUSeR: a semantic-based tool for retrieving Life Science web resources driven by text-rich user requirements.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-12

By:

Pérez, María;
Berlanga, Rafael;
Sanz, Ismael;
Aramburu, María José

Publication type:

Article

Semantic querying of relational data for clinical intelligence: a semantic web services-based approach.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-9

By:

Riazanov, Alexandre;
Klein, Artjom;
Shaban-Nejad, Arash;
Rose, Gregory W.;
Forster, Alan J.;
Buckeridge, David L.;
Baker, Christopher J.O.

Publication type:

Article

Dynamic enhancement of drug product labels to support drug safety, efficacy, and effectiveness.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-5

By:

Boyce, Richard D.;
Horn, John R.;
Hassanzadeh, Oktie;
de Waard, Anita;
Schneider, Jodi;
Luciano, Joanne S.;
Rastegar-Mojarad, Majid;
Liakata, Maria

Publication type:

Article

Using Semantic Web technology to support icd-11 textual definitions authoring.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-11

By:

Jiang, Guoqian;
Solbrig, Harold R.;
Chute, Christopher G.

Publication type:

Article

Deploying and sharing U-Compare workflows as web services.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-7

By:

Kontonatsios, Georgios;
Korkontzelos, Ioannis;
Kolluru, BalaKrishna;
Thompson, Paul;
Ananiadou, Sophia

Publication type:

Article

OPPL-Galaxy, a Galaxy tool for enhancing ontology exploitation as part of bioinformatics workflows.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-2

By:

Aranguren, Mikel Egaña;
Fernández-Breis, Jesualdo Tomás;
Mungall, Chris;
Antezana, Erick;
González2, Alejandro Rodríguez;
Wilkinson, Mark D.

Publication type:

Article

Building Linked Open Data towards integration of biomedical scientific literature with DBpedia.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-8

By:

Yamamoto, Yasunori;
Yamaguchi, Atsuko;
Yonezawa, Akinori

Publication type:

Article

The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-6

By:

Katayama, Toshiaki;
Wilkinson, Mark D.;
Micklem, Gos;
Kawashima, Shuichi;
Yamaguchi, Atsuko;
Nakao, Mitsuteru;
Yamamoto, Yasunori;
Okamoto, Shinobu;
Oouchida, Kenta;
Hong-Woo Chun;
Aerts, Jan;
Afzal, Hammad;
Antezana, Erick;
Arakawa, Kazuharu;
Aranda, Bruno;
Belleau, Francois;
Bolleman, Jerven;
Bonnal, Raoul J. P.;
Chapman, Brad;
Cock, Peter J. A.

Publication type:

Article

Pooling annotated corpora for clinical concept extraction.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-3

By:

Wagholikar, Kavishwar B.;
Torii, Manabu;
Jonnalagadda, Siddhartha R.;
Hongfang Liu

Publication type:

Article

A common type system for clinical natural language processing.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-1

By:

Wu, Stephen T.;
Kaggal, Vinod C.;
Dligach, Dmitriy;
Masanz, James J.;
Chen, Pei;
Becker, Lee;
Chapman, Wendy W.;
Savova, Guergana K.;
Hongfang Liu;
Chute, Christopher G.

Publication type:

Article

Building a drug ontology based on RxNorm and other sources.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-44

By:

Hanna, Josh;
Joseph, Eric;
Brochhausen, Mathias;
Hogan, William R.

Publication type:

Article

The environment ontology: contextualising biological and biomedical entities.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 2, doi. 10.1186/2041-1480-4-43

By:

Buttigieg, Pier Luigi;
Morrison, Norman;
Smith, Barry;
Mungall, Christopher J.;
Lewis, Suzanna E.

Publication type:

Article

The neurological disease ontology.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 3, doi. 10.1186/2041-1480-4-42

By:

Jensen, Mark;
Cox, Alexander P.;
Chaudhry, Naveed;
Ng, Marcus;
Sule, Donat;
Duncan, William;
Weinstock-Guttman, Bianca;
Smith, Barry;
Ruttenberg, Alan;
Szigeti, Kinga;
Diehl, Alexander D.;
Ray, Patrick

Publication type:

Article

MAPI: a software framework for distributed biomedical applications.

Published in:

Journal of Biomedical Semantics, 2013, v. 4, n. 1, p. 1, doi. 10.1186/2041-1480-4-4

By:

Trelles, Oswaldo;
Karlsson, Johan

Publication type:

Article