Works matching IS 20411480 AND DT 2011 AND VI 2

Results: 49

OMG U got flu? Analysis of shared health messages for bio-surveillance.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S9

By:

Collier, Nigel;
Son, Nguyen Truong;
Nguyen, Ngoc Mai

Publication type:

Article

Linguistic scope-based and biological eventbased speculation and negation annotations in the BioScope and Genia Event corpora.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S8

By:

Vincze, Veronika;
Szarvas, György;
Móra, György;
Ohta, Tomoko;
Farkas, Richárd

Publication type:

Article

Predicting speculation: a simple disambiguation approach to hedge detection in biomedical literature.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S7

By:

Velldal, Erik

Publication type:

Article

Coreference based event-argument relation extraction on biomedical text.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S6

By:

Yoshikawa, Katsumasa;
Riedel, Sebastian;
Hirao, Tsutomu;
Asahara, Masayuki;
Matsumoto, Yuji

Publication type:

Article

An analysis of gene/protein associations at PubMed scale.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S5

By:

Pyysalo, Sampo;
Ohta, Tomoko;
Tsujii, Jun'ichi

Publication type:

Article

Automatic extraction of semantic relations between medical entities: a rule based approach.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S4

By:

Ben Abacha, Asma;
Zweigenbaum, Pierre

Publication type:

Article

Improving the extraction of complex regulatory events from scientific text by using ontologybased inference.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S3

By:

Jung-jae Kim;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

Event extraction for DNA methylation.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S2

By:

Ohta, Tomoko;
Pyysalo, Sampo;
Miwa, Makoto;
Tsujii, Jun'ichi

Publication type:

Article

Assessment of NER solutions against the first and second CALBC Silver Standard Corpus.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S11

By:

Rebholz-Schuhmann, Dietrich;
Yepes, Antonio Jimeno;
Chen Li;
Kafkas, Senay;
Ian Lewin;
Ning Kang;
Corbett, Peter;
Milward, David;
Buyko, Ekaterina;
Beisswanger, Elena;
Hornbostel, Kerstin;
Kouznetsov, Alexandre;
Witte, René;
Laurila, Jonas B.;
Baker, Christopher J. O .;
Cheng-Ju Kuo;
Clematide, Simone;
Rinaldi, Fabio;
Farkas, Richárd;
Móra, György

Publication type:

Article

Towards cross-lingual alerting for bursty epidemic events.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S10

By:

Collier, Nigel

Publication type:

Article

Ontology design patterns to disambiguate relations between genes and gene products in GENIA.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, p. 1, doi. 10.1186/2041-1480-2-S5-S1

By:

Hoehndorf, Robert;
Ngomo, Axel-Cyrille Ngonga;
Pyysalo, Sampo;
Ohta, Tomoko;
Oellrich, Anika;
Rebholz-Schuhmann, Dietrich

Publication type:

Article

Towards mature use of semantic resources for biomedical analyses.

Published in:

2011

By:

Rebholz-Schuhmann, D.;
Rinaldi, F.;
Pyysalo, S.;
Collier, N.;
Hahn, U.

Publication type:

Proceeding

GOMMA: a component-based infrastructure for managing and analyzing life science ontologies and their evolution.

Published in:: Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 4, p. 6, doi. 10.1186/2041-1480-2-6
Publication type:: Article

Disjunctive shared information between ontology concepts: application to Gene Ontology.

Published in:: Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 4, p. 5, doi. 10.1186/2041-1480-2-5
Publication type:: Article

The 2nd DBCLS BioHackathon: interoperable bioinformatics Web services for integrated applications.

Published in:: Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 4, p. 4, doi. 10.1186/2041-1480-2-4
Publication type:: Article

Representing dispositions.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 4, p. 1, doi. 10.1186/2041-1480-2-S4-S4

By:

Röhl, Johannes;
Jansen, Ludger

Publication type:

Article

Anatomy ontologies and potential users: bridging the gap.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 4, p. 1, doi. 10.1186/2041-1480-2-S4-S3

By:

Travillian, Ravensara S.;
Adamusiak, Tomasz;
Burdett, Tony;
Gruenberger, Michael;
Hancock, John;
Mallon, Ann-Marie;
Malone, James;
Schofield, Paul;
Parkinson, Helen

Publication type:

Article

Grains, components and mixtures in biomedical ontologies.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 4, p. 1, doi. 10.1186/2041-1480-2-S4-S2

By:

Jansen, Ludger;
Schulz, Stefan

Publication type:

Article

An ontologically founded architecture for information systems in clinical and epidemiological research.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 4, p. 1, doi. 10.1186/2041-1480-2-S4-S1

By:

Uciteli, Alexandr;
Groß, Silvia;
Kireyev, Sergej;
Herre, Heinrich

Publication type:

Article

OBML -- Ontologies in Biomedicine and Life Sciences.

Published in:

2011

By:

Herre, Heinrich;
Hoehndorf, Robert;
Kelso, Janet;
Loebe, Frank;
Schulz, Stefan

Publication type:

Proceeding

A shortest-path graph kernel for estimating gene product semantic similarity.

Published in:: Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 3, p. 3, doi. 10.1186/2041-1480-2-3
Publication type:: Article

Semantic validation of the use of SNOMED CT in HL7 clinical documents.

Published in:: Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 3, p. 2, doi. 10.1186/2041-1480-2-2
Publication type:: Article

Reliability and type of consumer health documents on the World Wide Web: an annotation study.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 3, p. 1, doi. 10.1186/2041-1480-2-S3-S5

By:

Martin, Melanie J.

Publication type:

Article

MedEval -- A Swedish medical test collection with doctors and patients user groups.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 3, p. 1, doi. 10.1186/2041-1480-2-S3-S4

By:

Heppin, Karin Friberg

Publication type:

Article

Negation detection in Swedish clinical text: An adaption of NegEx to Swedish.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 3, p. 1, doi. 10.1186/2041-1480-2-S3-S3

By:

Skeppstedt, Maria

Publication type:

Article

A cascade of classifiers for extracting medication information from discharge summaries.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 3, p. 1, doi. 10.1186/2041-1480-2-S3-S2

By:

Halgrim, Scott Russell;
Fei Xia;
Solti, Imre;
Cadag, Eithon;
Uzuner, Özlem

Publication type:

Article

Characteristics of Finnish and Swedish intensive care nursing narratives: a comparative analysis to support the development of clinical language technologies.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 3, p. 1, doi. 10.1186/2041-1480-2-S3-S1

By:

Allvin, Helen;
Carlsson, Elin;
Dalianis, Hercules;
Danielsson-Ojala, Riitta;
Daudaravičius, Vidas;
Hassel, Martin;
Kokkinakis, Dimitrios;
Lundgrén-Laine, Heljä;
Nilsson, Gunnar H.;
Nytrø, Øystein;
Salanterä, Sanna;
Skeppstedt, Maria;
Suominen, Hanna;
Velupillai, Sumithra

Publication type:

Article

Louhi 2010: Special issue on Text and Data Mining of Health Documents.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 3, p. 1, doi. 10.1186/2041-1480-2-S3-I1

By:

Dalianis, Hercules;
Hassel, Martin;
Velupillai, Sumithra

Publication type:

Article

Representation of research hypotheses.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S9

By:

Soldatova, Larisa N.;
Rzhetsky, Andrey

Publication type:

Article

Mining of vaccine-associated IFN-γ gene interaction networks using the Vaccine Ontology.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S8

By:

Özgür, Arzucan;
Zuoshuang Xiang;
Radev, Dragomir R.;
Yongqun He

Publication type:

Article

Developing a kidney and urinary pathway knowledge base.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S7

By:

Jupp, Simon;
Klein, Julie;
Schanstra, Joost;
Stevens, Robert

Publication type:

Article

Scalable representations of diseases in biomedical ontologies.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S6

By:

Schulz, Stefan;
Spackman, Kent;
James, Andrew;
Cocos, Cristian;
Boeker, Martin

Publication type:

Article

Automating generation of textual class definitions from OWL to English.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S5

By:

Stevens, Robert;
Malone, James;
Williams, Sandra;
Power, Richard;
Third, Allan

Publication type:

Article

An open annotation ontology for science on web 3.0.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S4

By:

Ciccarese, Paolo;
Ocana, Marco;
Castro, Leyla Jael Garcia;
Das, Sudeshna;
Clark, Tim

Publication type:

Article

HyQue: evaluating hypotheses using Semantic Web technologies.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S3

By:

Callahan, Alison;
Dumontier, Michel;
Shah, Nigam H.

Publication type:

Article

How orthogonal are the OBO Foundry ontologies?

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S2

By:

Ghazvinian, Amir;
Noy, Natalya F.;
Musen, Mark A.

Publication type:

Article

Integration and publication of heterogeneous text-mined relationships on the Semantic Web.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S10

By:

Coulet, Adrien;
Garten, Yael;
Dumontier, Michel;
Altman, Russ B.;
Musen, Mark A.;
Shah, Nigam H.

Publication type:

Article

The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-S1

By:

Luciano, Joanne S.;
Andersson, Bosse;
Batchelor, Colin;
Bodenreider, Olivier;
Clark, Tim;
Denney, Christine K.;
Domarew, Christopher;
Gambet, Thomas;
Harland, Lee;
Jentzsch, Anja;
Kashyap, Vipul;
Kos, Peter;
Kozlovsky, Julia;
Lebo, Timothy;
Marshall, Scott M.;
McCusker, James P.;
McGuinness, Deborah L.;
Ogbuji, Chimezie;
Pichler, Elgar;
Powers, Robert L.

Publication type:

Article

Selected papers from the 13th Annual Bio-Ontologies Special Interest Group Meeting.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 2, p. 1, doi. 10.1186/2041-1480-2-S2-I1

By:

Soldatova, Larisa N.;
Sansone, Susanna-Assunta;
Stephens, Susie M.;
Shah, Nigam H.

Publication type:

Article

Linking the Resource Description Framework to cheminformatics and proteochemometrics.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-2-S1-S6

By:

Willighagen, Egon L.;
Alvarsson, Jonathan;
Andersson, Annsofie;
Eklund, Martin;
Lampa, Samuel;
Lapins, Maris;
Spjuth, Ola;
Wikberg, Jarl E. S.

Publication type:

Article

Semantics-based composition of EMBOSS services.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-2-S1-S5

By:

Lamprecht, Anna-Lena;
Naujokat, Stefan;
Margaria, Tiziana;
Steffen, Bernhard

Publication type:

Article

Mining semantic networks of bioinformatics e-resources from the literature.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-2-S1-S4

By:

Afzal, Hammad;
Eales, James;
Stevens, Robert;
Nenadic, Goran

Publication type:

Article

Mapping between the OBO and OWL ontology languages.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-2-S1-S3

By:

Tirmizi, Syed Hamid;
Aitken, Stuart;
Moreira, Dilvan A.;
Mungall, Chris;
Sequeda, Juan;
Shah, Nigam H.;
Miranker, Daniel P.

Publication type:

Article

Logic-based assessment of the compatibility of UMLS ontology sources.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-2-S1-S2

By:

Jiménez-Ruiz, Ernesto;
Grau, Bernardo Cuenca;
Horrocks, Ian;
Berlanga, Rafael

Publication type:

Article

Biomedical semantics in the Semantic Web.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. Suppl 1, p. 1, doi. 10.1186/2041-1480-2-S1-S1

By:

Splendiani, Andrea;
Burger, Albert;
Paschke, Adrian;
Romano, Paolo;
Marshall, M Scott

Publication type:

Article

Identifying and relating biological concepts in the Catalogue of Life.

Published in:: Journal of Biomedical Semantics, 2011, v. 2, n. 1, p. 7, doi. 10.1186/2041-1480-2-7
Publication type:: Article

Brucellosis Ontology (IDOBRU) as an extension of the Infectious Disease Ontology.

Published in:: Journal of Biomedical Semantics, 2011, v. 2, n. 1, p. 9, doi. 10.1186/2041-1480-2-9
Publication type:: Article

The Semantic Automated Discovery and Integration (SADI) Web service Design-Pattern, API and Reference Implementation.

Published in:: Journal of Biomedical Semantics, 2011, v. 2, n. 1, p. 8, doi. 10.1186/2041-1480-2-8
Publication type:: Article

Protein interaction sentence detection using multiple semantic kernels.

Published in:

Journal of Biomedical Semantics, 2011, v. 2, n. 1, p. 1, doi. 10.1186/2041-1480-2-1

By:

Polajnar, Tamara;
Damoulas, Theodoros;
Girolami, Mark

Publication type:

Article