Works in Standards in Genomic Sciences, 2016, Vol 11, Issue 1

Results: 27

Erratum to: The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0148-8

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

Insights into the single cell draft genome of ' Candidatus Achromatium palustre'.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0146-x

By:

Salman, Verena;
Berben, Tom;
Bowers, Robert;
Woyke, Tanja;
Teske, Andreas;
Angert, Esther

Publication type:

Article

The complete genome sequence of Eubacterium limosum SA11, a metabolically versatile rumen acetogen.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0147-9

By:

Kelly, William;
Henderson, Gemma;
Pacheco, Diana;
Li, Dong;
Reilly, Kerri;
Naylor, Graham;
Janssen, Peter;
Attwood, Graeme;
Altermann, Eric;
Leahy, Sinead

Publication type:

Article

High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409 with an incomplete denitrification pathway.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0140-3

By:

Zhou, En-Min;
Murugapiran, Senthil;
Mefferd, Chrisabelle;
Liu, Lan;
Xian, Wen-Dong;
Yin, Yi-Rui;
Ming, Hong;
Yu, Tian-Tian;
Huntemann, Marcel;
Clum, Alicia;
Pillay, Manoj;
Palaniappan, Krishnaveni;
Varghese, Neha;
Mikhailova, Natalia;
Stamatis, Dimitrios;
Reddy, T.;
Ngan, Chew;
Daum, Chris;
Shapiro, Nicole;
Markowitz, Victor

Publication type:

Article

Draft genome sequence and overview of the purple non sulfur bacterium Rhodopseudomonas palustris 42OL.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0145-y

By:

Adessi, Alessandra;
Spini, Giulia;
Presta, Luana;
Mengoni, Alessio;
Viti, Carlo;
Giovannetti, Luciana;
Fani, Renato;
De Philippis, Roberto

Publication type:

Article

Draft genome sequences of Pantoea agglomerans and Pantoea vagans isolates associated with termites.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0144-z

By:

Palmer, Marike;
de Maayer, Pieter;
Poulsen, Michael;
Steenkamp, Emma;
van Zyl, Elritha;
Coutinho, Teresa;
Venter, Stephanus

Publication type:

Article

Draft genomic sequence of Nereida ignava CECT 5292, a marine bacterium of the family Rhodobacteraceae.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0141-2

By:

Arahal, David;
Pujalte, María;
Rodrigo-Torres, Lidia

Publication type:

Article

Meeting report: GenBank microbial genomic taxonomy workshop (12-13 May, 2015).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0134-1

By:

Federhen, Scott;
Rossello-Mora, Ramon;
Klenk, Hans-Peter;
Tindall, Brian;
Konstantinidis, Konstantinos;
Whitman, William;
Brown, Daniel;
Labeda, David;
Ussery, David;
Garrity, George;
Colwell, Rita;
Hasan, Nur;
Graf, Joerg;
Parte, Aidan;
Yarza, Pablo;
Goldberg, Brittany;
Sichtig, Heike;
Karsch-Mizrachi, Ilene;
Clark, Karen;
McVeigh, Richard

Publication type:

Article

Genome sequence of Shimia str. SK013, a representative of the Roseobacter group isolated from marine sediment.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0143-0

By:

Kanukollu, Saranya;
Voget, Sonja;
Pohlner, Marion;
Vandieken, Verona;
Petersen, Jörn;
Kyrpides, Nikos;
Woyke, Tanja;
Shapiro, Nicole;
Göker, Markus;
Klenk, Hans-Peter;
Cypionka, Heribert;
Engelen, Bert

Publication type:

Article

Isolation and complete genome sequence of the thermophilic Geobacillus sp. 12AMOR1 from an Arctic deep-sea hydrothermal vent site.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0137-y

By:

Wissuwa, Juliane;
Stokke, Runar;
Fedøy, Anita-Elin;
Lian, Kjersti;
Smalås, Arne;
Steen, Ida

Publication type:

Article

The standard operating procedure of the DOE-JGI Metagenome Annotation Pipeline (MAP v.4).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0138-x

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Tennessen, Kristin;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

Complete genome sequence and characterization of avian pathogenic Escherichia coli field isolate ACN001.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0126-6

By:

Wang, Xiangru;
Wei, Liuya;
Wang, Bin;
Zhang, Ruixuan;
Liu, Canying;
Bi, Dingren;
Chen, Huanchun;
Tan, Chen

Publication type:

Article

Draft genome sequence of chloride-tolerant Leptospirillum ferriphilum Sp-Cl from industrial bioleaching operations in northern Chile.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0142-1

By:

Issotta, Francisco;
Galleguillos, Pedro;
Moya-Beltrán, Ana;
Davis-Belmar, Carol;
Rautenbach, George;
Covarrubias, Paulo;
Acosta, Mauricio;
Ossandon, Francisco;
Contador, Yasna;
Holmes, David;
Marín-Eliantonio, Sabrina;
Quatrini, Raquel;
Demergasso, Cecilia

Publication type:

Article

Genome sequence of Shinella sp. strain DD12, isolated from homogenized guts of starved Daphnia magna.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0129-3

By:

Poehlein, Anja;
Freese, Heike;
Daniel, Rolf;
Simeonova, Diliana

Publication type:

Article

Complete genome sequence and genomic characterization of Microcystis panniformis FACHB 1757 by third-generation sequencing.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0130-5

By:

Zhang, Jun-Yi;
Guan, Rui;
Zhang, Hu-Jun;
Li, Hua;
Xiao, Peng;
Yu, Gong-Liang;
Du, Lei;
Cao, De-Min;
Zhu, Bing-Chuan;
Li, Ren-Hui;
Lu, Zu-Hong

Publication type:

Article

Draft genome sequence for virulent and avirulent strains of Xanthomonas arboricola isolated from Prunus spp. in Spain.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0132-3

By:

Garita-Cambronero, Jerson;
Palacio-Bielsa, Ana;
López, María;
Cubero, Jaime

Publication type:

Article

Draft genome sequence of Sphingomonas paucimobilis strain LCT-SP1 isolated from the Shenzhou X spacecraft of China.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0136-z

By:

Pan, Lei;
Zhou, Hong;
Li, Jia;
Huang, Bing;
Guo, Jun;
Zhang, Xue-Lin;
Gao, Long-Cheng;
Xu, Chou;
Liu, Chang-Ting

Publication type:

Article

Erratum to: Complete genome sequences of Geobacillus sp. Y412MC52, a xylan-degrading strain isolated from obsidian hot spring in Yellowstone National Park.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0133-2

By:

Brumm, Phillip;
Land, Miriam;
Hauser, Loren;
Jeffries, Cynthia;
Chang, Yun-Juan;
Mead, David

Publication type:

Article

Draft genome sequence of Paenibacillus sp. strain A2.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0125-7

By:

Zheng, Beiwen;
Zhang, Fan;
Dong, Hao;
Chai, Lujun;
Shu, Fuchang;
Yi, Shaojin;
Wang, Zhengliang;
Cui, Qingfeng;
Dong, Hanping;
Zhang, Zhongzhi;
Hou, Dujie;
Yang, Jinshui;
She, Yuehui

Publication type:

Article

Draft Genome Sequence of the Biocontrol and Plant Growth-Promoting Rhizobacterium Pseudomonas fluorescens strain UM270.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0123-9

By:

Hernández-Salmerón, Julie;
Hernández-León, Rocio;
Orozco-Mosqueda, Ma.;
Valencia-Cantero, Eduardo;
Moreno-Hagelsieb, Gabriel;
Santoyo, Gustavo

Publication type:

Article

Complete genome sequence of the potato pathogen Ralstonia solanacearum UY031.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-016-0131-4

By:

Guarischi-Sousa, Rodrigo;
Puigvert, Marina;
Coll, Núria;
Siri, María;
Pianzzola, María;
Valls, Marc;
Setubal, João

Publication type:

Article

Permanent draft genome sequence of the probiotic strain Propionibacterium freudenreichii CIRM-BIA 129 (ITG P20).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0120-z

By:

Falentin, Hélène;
Deutsch, Stéphanie-Marie;
Loux, Valentin;
Hammani, Amal;
Buratti, Julien;
Parayre, Sandrine;
Chuat, Victoria;
Barbe, Valérie;
Aury, Jean-Marc;
Jan, Gwenaël;
Le Loir, Yves

Publication type:

Article

High quality permanent draft genome sequence of Phaseolibacter flectens ATCC 12775, a plant pathogen of French bean pods.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0127-5

By:

Aizenberg-Gershtein, Yana;
Izhaki, Ido;
Lapidus, Alla;
Copeland, Alex;
Reddy, TBK;
Huntemann, Marcel;
Pillay, Manoj;
Markowitz, Victor;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Halpern, Malka

Publication type:

Article

Draft genome of the Arabidopsis thaliana phyllosphere bacterium, Williamsia sp. ARP1.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0122-x

By:

Horn, Hannes;
Keller, Alexander;
Hildebrandt, Ulrich;
Kämpfer, Peter;
Riederer, Markus;
Hentschel, Ute

Publication type:

Article

Complete genome sequence of Methanospirillum hungatei type strain JF1.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0124-8

By:

Gunsalus, Robert;
Cook, Lauren;
Crable, Bryan;
Rohlin, Lars;
McDonald, Erin;
Mouttaki, Housna;
Sieber, Jessica;
Poweleit, Nicole;
Zhou, Hong;
Lapidus, Alla;
Daligault, Hajnalka;
Land, Miriam;
Gilna, Paul;
Ivanova, Natalia;
Kyrpides, Nikos;
Culley, David;
McInerney, Michael

Publication type:

Article

The complete genome sequence and analysis of a plasmid-bearing myxobacterial strain Myxococcus fulvus 124B02 (M 206081).

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0121-y

By:

Chen, Xiao-jing;
Han, Kui;
Feng, Jing;
Zhuo, Li;
Li, Ya-jie;
Li, Yue-zhong

Publication type:

Article

Permanent draft genome sequence of Desulfurococcus mobilis type strain DSM 2161, a thermoacidophilic sulfur-reducing crenarchaeon isolated from acidic hot springs of Hveravellir, Iceland.

Published in:

Standards in Genomic Sciences, 2016, v. 11, n. 1, p. 1, doi. 10.1186/s40793-015-0128-4

By:

Susanti, Dwi;
Johnson, Eric;
Lapidus, Alla;
Han, James;
Reddy, T.;
Pilay, Manoj;
Ivanova, Natalia;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos;
Mukhopadhyay, Biswarup

Publication type:

Article