Works in Standards in Genomic Sciences, 2015, Vol 10, Issue 1

Results: 103

Genome sequences of two closely related strains of Escherichia coli K-12 GM4792.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0114-x

By:

Zhang, Yan-Cong;
Zhang, Yan;
Zhu, Bi-Ru;
Zhang, Bo-Wen;
Ni, Chuan;
Zhang, Da-Yong;
Huang, Ying;
Pang, Erli;
Lin, Kui

Publication type:

Article

Complete genome sequence of the molybdenum-resistant bacterium Bacillus subtilis strain LM 4-2.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0118-6

By:

You, Xiao-Yan;
Wang, Hui;
Ren, Guang-Yue;
Li, Jing-Jing;
Duan, Xu;
Zheng, Hua-Jun;
Jiang, Zheng-Qiang

Publication type:

Article

High-quality permanent draft genome sequence of Ensifer medicae strain WSM244, a microsymbiont isolated from Medicago polymorpha growing in alkaline soil.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0119-5

By:

Ardley, Julie;
Tian, Rui;
O'Hara, Graham;
Seshadri, Rekha;
Reddy, T.;
Pati, Amrita;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Howieson, John;
Reeve, Wayne

Publication type:

Article

Draft genome sequence of Halopiger salifodinae KCY07-B2, an extremly halophilic archaeon isolated from a salt mine.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0113-y

By:

Zhang, Wei-Yan;
Hu, Jing;
Pan, Jie;
Sun, Cong;
Wu, Min;
Xu, Xue-Wei

Publication type:

Article

Genome sequence of Lysobacter dokdonensis DS-58, a gliding bacterium isolated from soil in Dokdo, Korea.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0116-8

By:

Kwak, Min-Jung;
Kwon, Soon-Kyeong;
Yoon, Jung-Hoon;
Kim, Jihyun

Publication type:

Article

Complete genome sequence of and proposal of Thermofilum uzonense sp. nov. a novel hyperthermophilic crenarchaeon and emended description of the genus Thermofilum.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0105-y

By:

Toshchakov, Stepan;
Korzhenkov, Aleksei;
Samarov, Nazar;
Mazunin, Ilia;
Mozhey, Oleg;
Shmyr, Ilya;
Derbikova, Ksenia;
Taranov, Evgeny;
Dominova, Irina;
Bonch-Osmolovskaya, Elizaveta;
Patrushev, Maxim;
Podosokorskaya, Olga;
Kublanov, Ilya

Publication type:

Article

Genome sequence of the clover symbiont Rhizobium leguminosarum bv. trifolii strain CC275e.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0110-1

By:

Delestre, Clément;
Laugraud, Aurélie;
Ridgway, Hayley;
Ronson, Clive;
O'Callaghan, Maureen;
Barrett, Brent;
Ballard, Ross;
Griffiths, Andrew;
Young, Sandra;
Blond, Celine;
Gerard, Emily;
Wakelin, Steve

Publication type:

Article

Draft genome of Gemmata massiliana sp. nov, a water-borne Planctomycetes species exhibiting two variants.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0103-0

By:

Aghnatios, Rita;
Cayrou, Caroline;
Garibal, Marc;
Robert, Catherine;
Azza, Said;
Raoult, Didier;
Drancourt, Michel

Publication type:

Article

Genome sequence of a dissimilatory Fe(III)-reducing bacterium Geobacter soli type strain GSS01.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0117-7

By:

Yang, Guiqin;
Chen, Shanshan;
Zhou, Shungui;
Liu, Yongfeng

Publication type:

Article

Report from the Standards for Pathogen Identification via Next-Generation Sequencing (SPIN) Workshop.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0112-z

By:

Olson, Nathan;
Jackson, Scott;
Lin, Nancy

Publication type:

Article

H3ABioNet computational metagenomics workshop in Mauritius: training to analyse microbial diversity for Africa.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0111-0

By:

Baichoo, Shakuntala;
Botha, Gerrit;
Jaufeerally-Fakim, Yasmina;
Mungloo-Dilmohamud, Zahra;
Lundin, Daniel;
Mulder, Nicola;
Promponas, Vasilis;
Ouzounis, Christos

Publication type:

Article

Complete genome sequence of Salinicoccus halodurans H3B36, isolated from the Qaidam Basin in China.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0108-8

By:

Jiang, Kai;
Xue, Yanfen;
Ma, Yanhe

Publication type:

Article

Complete genome of Pseudomonas chlororaphis strain UFB2, a soil bacterium with antibacterial activity against bacterial canker pathogen of tomato.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0106-x

By:

Deng, Peng;
Wang, Xiaoqiang;
Baird, Sonya;
Lu, Shi-En

Publication type:

Article

Genome sequence of Bradyrhizobium sp. WSM1253; a microsymbiont of Ornithopus compressus from the Greek Island of Sifnos.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0115-9

By:

Tiwari, Ravi;
Howieson, John;
Yates, Ron;
Tian, Rui;
Held, Britanny;
Tapia, Roxanne;
Han, Cliff;
Seshadri, Rekha;
Reddy, T.;
Huntemann, Marcel;
Pati, Amrita;
Woyke, Tanja;
Markowitz, Victor;
Ivanova, Natalia;
Kyrpides, Nikos;
Reeve, Wayne

Publication type:

Article

Complete genome sequence and characterization of the haloacid-degrading Burkholderia caribensis MBA4.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0109-7

By:

Pan, Yanling;
Kong, Ka;
Tsang, Jimmy

Publication type:

Article

Erratum to: An updated genome annotation for the model marine bacterium Ruegeria pomeroyi DSS-3.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0107-9

By:

Rivers, Adam;
Smith, Christa;
Moran, Mary

Publication type:

Article

Complete genome sequence of bacteriophage P26218 infecting Rhodoferax sp. strain IMCC26218.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0090-1

By:

Moon, Kira;
Kang, Ilnam;
Kim, Suhyun;
Cho, Jang-Cheon;
Kim, Sang-Jong

Publication type:

Article

Genome sequence and description of the anaerobic lignin-degrading bacterium Tolumonas lignolytica sp. nov.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0100-3

By:

Billings, Andrew;
Fortney, Julian;
Hazen, Terry;
Simmons, Blake;
Davenport, Karen;
Goodwin, Lynne;
Ivanova, Natalia;
Kyrpides, Nikos;
Mavromatis, Konstantinos;
Woyke, Tanja;
DeAngelis, Kristen

Publication type:

Article

Complete genome sequence of Staphylococcus aureus, strain ILRI_Eymole1/1, isolated from a Kenyan dromedary camel.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0098-6

By:

Zubair, Saima;
Fischer, Anne;
Liljander, Anne;
Meens, Jochen;
Hegerman, Jan;
Gourlé, Hadrien;
Bishop, Richard;
Roebbelen, Ina;
Younan, Mario;
Mustafa, Mudassir;
Mushtaq, Mamoona;
Bongcam-Rudloff, Erik;
Jores, Joerg

Publication type:

Article

Annotation inconsistencies beyond sequence similarity-based function prediction - phylogeny and genome structure.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0101-2

By:

Promponas, Vasilis;
Iliopoulos, Ioannis;
Ouzounis, Christos

Publication type:

Article

Complete genome sequence of Novosphingobium pentaromativorans US6-1.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0102-1

By:

Choi, Dong;
Kwon, Yong;
Kwon, Kae;
Kim, Sang-Jin

Publication type:

Article

Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1, an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan soda lake.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0097-7

By:

Berben, Tom;
Sorokin, Dimitry;
Ivanova, Natalia;
Pati, Amrita;
Kyrpides, Nikos;
Goodwin, Lynne;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

Draft genome sequence of Janthinobacterium lividum strain MTR reveals its mechanism of capnophilic behavior.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0104-z

By:

Valdes, Natalia;
Soto, Paola;
Cottet, Luis;
Alarcon, Paula;
Gonzalez, Alex;
Castillo, Antonio;
Corsini, Gino;
Tello, Mario

Publication type:

Article

Draft genome sequence of Cellulomonas carbonis T26 and comparative analysis of six Cellulomonas genomes.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0096-8

By:

Zhuang, Weiping;
Zhang, Shengzhe;
Xia, Xian;
Wang, Gejiao

Publication type:

Article

Complete genome sequencing of Dehalococcoides sp. strain UCH007 using a differential reads picking method.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0095-9

By:

Uchino, Yoshihito;
Miura, Takamasa;
Hosoyama, Akira;
Ohji, Shoko;
Yamazoe, Atsushi;
Ito, Masako;
Takahata, Yoh;
Suzuki, Ken-ichiro;
Fujita, Nobuyuki

Publication type:

Article

Genome sequence and description of Pantoea septica strain FF5.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0083-0

By:

Lo, Cheikh;
Padhmanabhan, Roshan;
Mediannikov, Oleg;
Nguyen, Thi;
Raoult, Didier;
Fournier, Pierre-Edouard;
Fenollar, Florence

Publication type:

Article

Complete genome sequence of the thermophilic Acidobacteria, Pyrinomonas methylaliphatogenes type strain K22.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0099-5

By:

Lee, Kevin;
Morgan, Xochitl;
Power, Jean;
Dunfield, Peter;
Huttenhower, Curtis;
Stott, Matthew

Publication type:

Article

High-quality draft genome sequence of Gracilimonas tropica CL-CB462 (DSM 19535), isolated from a Synechococcus culture.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0088-8

By:

Choi, Dong;
Ahn, Chisang;
Jang, Gwang;
Lapidus, Alla;
Han, James;
Reddy, T.;
Huntemann, Marcel;
Pati, Amrita;
Ivanova, Natalia;
Markowitz, Victor;
Rohde, Manfred;
Tindall, Brian;
Göker, Markus;
Woyke, Tanja;
Klenk, Hans-Peter;
Kyrpides, Nikos;
Cho, Byung

Publication type:

Article

Complete genome sequence of bacteriophage P8625, the first lytic phage that infects Verrucomicrobia.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0091-0

By:

Choi, Ahyoung;
Kang, Ilnam;
Yang, Seung-Jo;
Cho, Jang-Cheon

Publication type:

Article

Working draft genome sequence of the mesophilic acetate oxidizing bacterium Syntrophaceticus schinkii strain Sp3.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0092-z

By:

Manzoor, Shahid;
Müller, Bettina;
Niazi, Adnan;
Schnürer, Anna;
Bongcam-Rudloff, Erik

Publication type:

Article

High-quality draft genome sequence of a new phytase-producing microorganism Pantoea sp. 3.5.1.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0093-y

By:

Suleimanova, Aliya;
Toymentseva, Anna;
Boulygina, Eugenia;
Kazakov, Sergey;
Mardanova, Ayslu;
Balaban, Nelly;
Sharipova, Margarita

Publication type:

Article

Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1, a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrification.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0080-3

By:

Berben, Tom;
Sorokin, Dimitry;
Ivanova, Natalia;
Pati, Amrita;
Kyrpides, Nikos;
Goodwin, Lynne;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

Genome sequence of Pedobacter glucosidilyticus DD6b, isolated from zooplankton Daphnia magna.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0086-x

By:

Poehlein, Anja;
Daniel, Rolf;
Simeonova, Diliana

Publication type:

Article

High quality draft genome sequence of the moderately halophilic bacterium Pontibacillus yanchengensis Y32 and comparison among Pontibacillus genomes.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0085-y

By:

Huang, Jing;
Qiao, Zi xu;
Tang, Jing wei;
Wang, Gejiao

Publication type:

Article

Complete genome sequence of Paracoccus marcusii phage vB_PmaS-R3 isolated from the South China Sea.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0089-7

By:

Xu, Yongle;
Zhang, Rui;
Jiao, Nianzhi

Publication type:

Article

High quality draft genomic sequence of Flavobacterium enshiense DK69 and comparison among Flavobacterium genomes.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0084-z

By:

Zeng, Zhipeng;
Chen, Chong;
Du, Hailun;
Wang, Gejiao;
Li, Mingshun

Publication type:

Article

Complete genome sequence of Bacillus cereus FORC_005, a food-borne pathogen from the soy sauce braised fish-cake with quail-egg.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0094-x

By:

Lee, Dong-Hoon;
Kim, Hye;
Chung, Han;
Lim, Jong;
Kim, Suyeon;
Kim, Se;
Ku, Hye-Jin;
Kim, Heebal;
Ryu, Sangryeol;
Choi, Sang;
Lee, Ju-Hoon

Publication type:

Article

Draft genome sequence of a nitrate-reducing, o-phthalate degrading bacterium, Azoarcus sp. strain PA01.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0079-9

By:

Junghare, Madan;
Patil, Yogita;
Schink, Bernhard

Publication type:

Article

High quality draft genomes of the Mycoplasma mycoides subsp. mycoides challenge strains Afadé and B237.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0067-0

By:

Fischer, Anne;
Santana-Cruz, Ivette;
Hegerman, Jan;
Gourlé, Hadrien;
Schieck, Elise;
Lambert, Mathieu;
Nadendla, Suvarna;
Wesonga, Hezron;
Miller, Rachel;
Vashee, Sanjay;
Weber, Johann;
Meens, Jochen;
Frey, Joachim;
Jores, Joerg

Publication type:

Article

Genomic information of the arsenic-resistant bacterium Lysobacter arseniciresistens type strain ZS79 and comparison of Lysobacter draft genomes.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0070-5

By:

Liu, Lin;
Zhang, Shengzhe;
Luo, Meizhong;
Wang, Gejiao

Publication type:

Article

The standard operating procedure of the DOE-JGI Microbial Genome Annotation Pipeline (MGAP v.4).

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0077-y

By:

Huntemann, Marcel;
Ivanova, Natalia;
Mavromatis, Konstantinos;
Tripp, H.;
Paez-Espino, David;
Palaniappan, Krishnaveni;
Szeto, Ernest;
Pillay, Manoj;
Chen, I-Min;
Pati, Amrita;
Nielsen, Torben;
Markowitz, Victor;
Kyrpides, Nikos

Publication type:

Article

Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0078-x

By:

Berben, Tom;
Sorokin, Dimitry;
Ivanova, Natalia;
Pati, Amrita;
Kyrpides, Nikos;
Goodwin, Lynne;
Woyke, Tanja;
Muyzer, Gerard

Publication type:

Article

Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0081-2

By:

Lagier, Jean-Christophe;
Khelaifia, Saber;
Azhar, Esam;
Croce, Olivier;
Bibi, Fehmida;
Jiman-Fatani, Asif;
Yasir, Muhammad;
Helaby, Huda;
Robert, Catherine;
Fournier, Pierre-Edouard;
Raoult, Didier

Publication type:

Article

High-quality permanent draft genome sequence of Bradyrhizobium sp. strain WSM1743 - an effective microsymbiont of an Indigofera sp. growing in Australia.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0073-2

By:

Eshraghi, Leila;
De Meyer, Sofie;
Tian, Rui;
Seshadri, Rekha;
Ivanova, Natalia;
Pati, Amrita;
Markowitz, Victor;
Woyke, Tanja;
Kyrpides, Nikos;
Tiwari, Ravi;
Yates, Ron;
Howieson, John;
Reeve, Wayne

Publication type:

Article

Complete genome sequence of Propionibacterium freudenreichii DSM 20271.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0082-1

By:

Koskinen, Patrik;
Deptula, Paulina;
Smolander, Olli-Pekka;
Tamene, Fitsum;
Kammonen, Juhana;
Savijoki, Kirsi;
Paulin, Lars;
Piironen, Vieno;
Auvinen, Petri;
Varmanen, Pekka

Publication type:

Article

Complete genome sequences of bacteriophages P12002L and P12002S, two lytic phages that infect a marine Polaribacter strain.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0076-z

By:

Kang, Ilnam;
Jang, Hani;
Cho, Jang-Cheon

Publication type:

Article

Complete genome sequence of Geobacillus thermoglucosidasius C56-YS93, a novel biomass degrader isolated from obsidian hot spring in Yellowstone National Park.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0075-0

By:

Brumm, Phillip;
Land, Miriam;
Mead, David

Publication type:

Article

Complete genome sequence of Mycobacterium tuberculosis K from a Korean high school outbreak, belonging to the Beijing family.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0071-4

By:

Han, Seung;
Song, Taeksun;
Cho, Yong-Joon;
Kim, Jong-Seok;
Choi, Soo;
Bang, Hye-Eun;
Chun, Jongsik;
Bai, Gill-Han;
Cho, Sang-Nae;
Shin, Sung

Publication type:

Article

Draft genome sequence of Halomonas meridiana R1t3 isolated from the surface microbiota of the Caribbean Elkhorn coral Acropora palmata.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0069-y

By:

Meyer, Julie;
Dillard, Brian;
Rodgers, John;
Ritchie, Kim;
Paul, Valerie;
Teplitski, Max

Publication type:

Article

The complete genome sequence and emendation of the hyperthermophilic, obligate iron-reducing archaeon 'Geoglobus ahangari' strain 234.

Published in:

Standards in Genomic Sciences, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s40793-015-0035-8

By:

Manzella, Michael;
Holmes, Dawn;
Rocheleau, Jessica;
Chung, Amanda;
Reguera, Gemma;
Kashefi, Kazem

Publication type:

Article