Works in Plant Genome, 2025, Vol 18, Issue 2

Results: 45

Empowering plant epigenetics to breed resilience of crops: From nucleolar dominance to transgenerational epigenetic inheritance.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70064

By:

Chen, Zengjian Jeffrey

Publication type:

Article

Alanine aminotransferase contributes to hypoxia sensitivity and dormancy in barley seeds.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70063

By:

Farquharson, Lochlen G. H.;
Samanfar, Bahram;
Khanal, Raja;
Brauer, Elizabeth K.

Publication type:

Article

Genetic dissection of crown rust resistance in oat and the identification of key adult plant resistance genes.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70059

By:

Shariatipour, Nikwan;
Yazdani, Mahboobeh;
Carlsson, Anders;
Bengtsson, Therése;
Kianian, Shahryar F.;
Jalli, Marja;
Rahmatov, Mahbubjon

Publication type:

Article

Environment ensemble models for genomic prediction in common bean (Phaseolus vulgaris L.).

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70057

By:

Chiaravallotti, Isabella;
Pauptit, Owen;
Hoyos‐Villegas, Valerio

Publication type:

Article

Genomic and biochemical comparison of allelic triple‐mutant lines derived from conventional breeding and multiplex gene editing.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70056

By:

Liu, Junqi;
Kumar, Ritesh;
Gunapati, Samatha;
Mulkey, Steven;
Qiu, Yinjie;
Xiong, Yer;
Ramasubramanian, Vishnu;
Michno, Jean‐Michel;
Awasthi, Praveen;
Gallaher, Daniel D.;
Nguyen, Thi Thao;
Kim, Won‐Seok;
Krishnan, Hari B.;
Lorenz, Aaron J.;
Stupar, Robert M.

Publication type:

Article

Discovering leaf and stripe rust resistance in soft red winter wheat through genome‐wide association studies.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70055

By:

Bagwell, John W.;
Mergoum, Mohamed;
Subedi, Madhav;
Sapkota, Suraj;
Ghimire, Bikash;
Lopez, Benjamin;
Buck, James W.;
Bahri, Bochra A.

Publication type:

Article

Allelism of Rps3b and Rps11 revealed by NLR gene capture of resistance genes to Phytophthora sojae in soybean.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70054

By:

Asselin, Yanick;
Dias, Luann A. F.;
Labbé, Caroline;
Lebreton, Amandine;
Boucher‐St‐Amour, Vincent‐Thomas;
Cinget, Benjamin;
Belzile, François;
Malone, Gaspar;
Marcelino‐Guimarães, Francismar C.;
Bélanger, Richard R.

Publication type:

Article

Genomic selection: Essence, applications, and prospects.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70053

By:

Escamilla, Diana M.;
Li, Dongdong;
Negus, Karlene L.;
Kappelmann, Kiara L.;
Kusmec, Aaron;
Vanous, Adam E.;
Schnable, Patrick S.;
Li, Xianran;
Yu, Jianming

Publication type:

Article

Enhancing prediction accuracy of key biomass partitioning traits in wheat using multi‐kernel genomic prediction models integrating secondary traits and environmental covariates.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70052

By:

Kunwar, Sudip;
Babar, Md Ali;
Jarquin, Diego;
Ampatzidis, Yiannis;
Khan, Naeem;
Acharya, Janam Prabhat;
McBreen, Jordan;
Adewale, Samuel;
Brown‐Guedira, Gina

Publication type:

Article

Identification of significant genome‐wide associations and QTL underlying variation in seed protein composition in pea (Pisum sativum L.).

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70051

By:

Warsame, Ahmed O.;
Balk, Janneke;
Domoney, Claire

Publication type:

Article

Multi‐trait/environment sparse genomic prediction using the SFSI R‐package.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70050

By:

Lopez‐Cruz, Marco;
de los Campos, Gustavo

Publication type:

Article

Phenotypic and transcriptomic analysis reveals key genes associated with plant height in rubber tree and functional characterization of the candidate gene HbFLA11.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70048

By:

Yang, Baoyi;
Zhang, Yuanyuan;
Li, Weiguo;
Huang, Xiao;
Gao, Xinsheng;
Qi, Juncang;
Wang, Xiangjun

Publication type:

Article

Genomic prediction in Persian walnut: Optimization levers according to genetic architecture of complex traits.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70047

By:

Bernard, Anthony;
Bénéjam, Juliette;
Roth, Morgane;
Lheureux, Fabrice;
Dirlewanger, Elisabeth

Publication type:

Article

An RNase H‐Like gene complements resistance to Bean common mosaic necrosis virus in Phaseolus vulgaris.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70046

By:

Soler‐Garzón, Alvaro;
Miklas, Phillip N.

Publication type:

Article

Correction to "Insights into the roles of long noncoding RNAs in the communication between plants and the environment".

Published in:: Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70045
Publication type:: Article

Exploring chromosomal variations in garden roses: Insights from high‐density SNP array data and a new tool, Qploidy.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70044

By:

Taniguti, Cristiane H.;
Lau, Jeekin;
Hochhaus, Tessa;
Arias, Diana C. Lopez;
Hokanson, Stan C.;
Zlesak, David C.;
Byrne, David H.;
Klein, Patricia E.;
Riera‐Lizarazu, Oscar

Publication type:

Article

Characterization of wheat oligo‐tiller mutant ot2 and fine mapping of the mutant gene Taot2.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70043

By:

Wang, Chenxi;
Bai, Jiaxing;
Xiong, Hongchun;
Xie, Yongdun;
Gu, Jiayu;
Zhao, Linshu;
Li, Huiyuan;
Ding, Yuping;
Guo, Xinmei;
Guo, Huijun;
Liu, Luxiang

Publication type:

Article

Variant filters using segregation information improve mapping of nectar‐production genes in sunflower (Helianthus annuus L.).

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70042

By:

Barstow, Ashley C.;
McNellie, James P.;
Smart, Brian C.;
Keepers, Kyle G.;
Prasifka, Jarrad R.;
Kane, Nolan C.;
Hulke, Brent S.

Publication type:

Article

Genome‐wide association study reveals significant loci and candidate genes for fruit branch length in upland cotton.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70041

By:

Chang, Hui;
Ji, Honghu;
Liu, Ruijie;
Feng, Juling;
Wang, Jiayi;
Zhao, Shuqi;
Li, Wei;
Qiu, Zehua;
Elsheery, Nabil Ibrahim;
Yu, Shuxun;
Li, Libei;
Feng, Zhen

Publication type:

Article

Future flooding tolerant rice germplasm: Resilience afforded beyond Sub1A gene.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70040

By:

Anumalla, Mahender;
Khanna, Apurva;
Catolos, Margaret;
Ramos, Joie;
Sta. Cruz, Ma Teresa;
Venkateshwarlu, Challa;
Konijerla, Jaswanth;
Pradhan, Sharat Kumar;
Dash, Sushanta Kumar;
Das, Yater;
Chowdhury, Dhiren;
Chetia, Sanjay Kumar;
das, Janardan;
Nath, Phuleswar;
Merugumala, Girija Rani;
Roy, Bidhan;
Pradhan, Navin;
Jana, Monoranjan;
Dana, Indrani;
Debnath, Suman

Publication type:

Article

Low density marker‐based effectiveness and efficiency of early‐generation genomic selection relative to phenotype‐based selection in dolichos bean (Lablab purpureus L. Sweet).

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70039

By:

Kalpana, Mugali Pundalik;
Ramesh, Sampangi;
Siddu, Chindi Basavaraj;
Basanagouda, Gonal;
Madhusudan, K.;
Sathish, Hosakoti;
Sindhu, Dinesh;
Kemparaju, Munegowda;
Anilkumar, C.

Publication type:

Article

Genome editing in maize and sorghum: A comprehensive review of CRISPR/Cas9 and emerging technologies.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70038

By:

Namata, Mercy Jocyline;
Xu, Jingyi;
Habyarimana, Ephrem;
Palakolanu, Sudhakar Reddy;
Wang, Lihua;
Li, Jieqin

Publication type:

Article

Genome‐wide locus–allele comparison reveals differential evolution dynamics from annual wild to landrace and released cultivar soybeans.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70037

By:

Hu, Xinyang;
He, Jianbo;
Gai, Junyi

Publication type:

Article

A maize landrace introgression library reveals a negative effect of root‐to‐shoot ratio on water‐use efficiency.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70036

By:

Sciara, Giuseppe;
Camerlengo, Francesco;
Welcker, Claude;
Cabrera‐Bosquet, Llorenç;
Grau, Antonin;
Cané, Maria Angela;
Bovina, Riccardo;
Tardieu, Francois;
Tuberosa, Roberto;
Salvi, Silvio

Publication type:

Article

Genome‐wide association study and BSR‐seq identify nitrate reductase–related genes in rice landraces (Oryza sativa L.).

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70035

By:

Luo, Shuangshuang;
Liao, Zuyu;
Huang, Shilv;
Xia, Xiuzhong;
Zhang, Zongqiong;
Nong, Baoxuan;
Luo, Tongping;
Zhu, Chenli;
Chen, Can;
Guo, Hui;
Feng, Rui;
Pan, Yinghua;
Liang, Shuhui;
Li, Yongcheng;
Liu, Jianhui;
Qiu, Yongfu;
Li, Danting;
Yang, Xinghai

Publication type:

Article

Genetic analysis and molecular mapping of the purple leaf sheath in barley (Hordeum vulgare).

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70034

By:

Mewa, Demeke B.;
Caspersen, Ann;
Fiedler, Jason D.;
Hu, Gongshe;
Gao, Dongying

Publication type:

Article

Overexpression of the GmERF071 gene confers resistance to soybean cyst nematode in soybean.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70033

By:

Xiong, Erhui;
Xu, Jiaqi;
Feng, Pingzhang;
Lian, Yun;
Zhi, Xiaoling;
Li, Ke;
Zhang, Erhan;
Li, Bing;
Zhao, Shijie;
Liu, Changzhong;
Wei, Chengyu;
Li, Panpan;
Zhao, Yaping;
Zhao, Lipei;
Zheng, Mengwei;
Zhang, Heng;
Li, Yi;
Chu, Shanshan;
Jiao, Yongqing

Publication type:

Article

RPAD locus controls prostrate growth habit in Oryza nivara.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70032

By:

Liu, Yuntao;
Yao, Fang;
Zou, Jun;
Guo, Daokuan;
Jiang, Wanxia;
Fan, Jinjian;
Li, Ruichao;
Yang, Zhenbin;
Ma, Yurong;
Deng, Haodong;
Huang, Jiayu;
Tan, Lubin

Publication type:

Article

Discovery of major QTL and a massive haplotype associated with cannabinoid biosynthesis in drug‐type Cannabis.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70031

By:

de Ronne, Maxime;
Torkamaneh, Davoud

Publication type:

Article

Genomic selection of maize test‐cross hybrids leveraged by marker sampling.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70030

By:

Bernardeli, Arthur;
Guilhen, José Henrique Soler;
Oliveira, Isadora Cristina Martins;
Guimarães, Lauro José Moreira;
Borém, Aluízio;
Jarquin, Diego;
Pastina, Maria Marta

Publication type:

Article

A novel, major, and validated QTL for grain zinc concentration independent of yield traits in tetraploid wheat.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70029

By:

Zeng, Zhaoyong;
Ma, Jian;
Chen, Bingjie;
Tang, Huaping;
Xian, Xin;
Huo, Yuanfeng;
Xu, Yinggang;
Tang, Xiaoyan;
Gao, Xuesong;
Chen, Guangdeng

Publication type:

Article

Genetic architecture of anthocyanin pigment traits and purple spot (Stemphylium vesicarium) resistance in an F<sub>1</sub> pseudo‐testcross population of asparagus.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70028

By:

Parajuli, Suman;
McDonald, Mary Ruth;
Adhikari, Laxman;
Wolyn, David J.

Publication type:

Article

Erratum to "Identification, characterization, and expression of Oryza sativa tryptophan decarboxylase genes associated with fluroxypyr‐meptyl metabolism".

Published in:: 2025
Publication type:: Correction Notice

Editorial Board.

Published in:: Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70025
Publication type:: Article

Genetic mapping of loci associated with yield and their components in black common bean (Phaseolus vulgaris L.).

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70024

By:

Reche, Deivid Lincoln;
Gonçalves‐Vidigal, Maria Celeste;
Vidigal Filho, Pedro Soares;
Vaz Bisneta, Mariana;
Lacanallo, Giselly Figueiredo;
Santos, Alessandro A. Brito dos;
Santos, Abner Pais dos

Publication type:

Article

Assessing the utility of genomic selection to breed for durable Ascochyta blight resistance in chickpea.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70023

By:

Lin, Zibei;
Li, Yongjun;
Riaz, Adnan;
Sudheesh, Shimna;
Yazdifar, Shahin;
Atieno, Judith;
Blake, Sara;
Croser, Janine;
Fanning, Joshua;
Hayden, Matthew J.;
Kaur, Sukhjiwan

Publication type:

Article

Comprehensive mapping of Arabidopsis alternative splicing landscape reveals key insights into plant development and immunity.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70022

By:

Barff, Teura;
Sanchez Carrillo, Ingrid Berenice;
Parra Gutiérrez, Valeria Paola;
B. Plourde, Mélodie;
Joly, David L.;
Germain, Hugo

Publication type:

Article

Genetic and transcriptomic analysis of lentil seed imbibition and dormancy in relation to its domestication.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70021

By:

Guerra‐García, Azalea;
Balarynová, Jana;
Smykal, Petr;
von Wettberg, Eric J;
Noble, Scott D.;
Bett, Kirstin E.

Publication type:

Article

Landscape of rare‐allele variants in cultivated and wild soybean genomes.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70020

By:

Liu, Zhi;
Shi, Xiaolei;
Yang, Qing;
Li, Ying;
Yang, Chunyan;
Zhang, Mengchen;
An, Yong‐Qiang Charles;
Nguyen, Henry T.;
Yan, Long;
Song, Qijian

Publication type:

Article

Development of a cost‐effective high‐throughput mid‐density 5K genotyping assay for germplasm characterization and breeding in groundnut.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70019

By:

Pandey, Manish K.;
Sharma, Vinay;
Khan, Aamir W.;
Joshi, Pushpesh;
Gangurde, Sunil S.;
Bajaj, Prasad;
Janila, Pasupuleti;
Chitikineni, Annapurna;
Bhat, Ramesh;
Motagi, Babu N.;
Sangh, Chandramohan;
Radhakrishnan, Thankappan;
Bera, Sandip K.;
Gorjanc, Gregor;
Gujjula, Krishna Reddy;
Hall, Nathan;
Carrasco, Claudio D.;
Arjun, Kandalam;
Chandram, Srinivas;
Varshney, Rajeev K.

Publication type:

Article

Genetic analysis of predicted vegetative biomass and biomass‐related traits from digital phenotyping of strawberry.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70018

By:

Dalid, Cheryl;
Zheng, Caiwang;
Osorio, Luis;
Verma, Sujeet;
Abd‐Elrahman, Amr;
Wang, Xu;
Whitaker, Vance M.

Publication type:

Article

Exploring the multifaceted dynamics of flowering time regulation in field crops: Insight and intervention approaches.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70017

By:

Naik, Yogesh Dashrath;
Bahuguna, Rajeev N.;
Garcia‐Caparros, Pedro;
Zwart, Rebecca S.;
Reddy, M. S. Sai;
Mir, Reyazul Rouf;
Jha, Uday Chand;
Fakrudin, B.;
Pandey, Manish K.;
Challabathula, Dinakar;
Sharma, Vinay Kumar;
Reddy, Umesh K.;
Kumar, Chanda Venkata Sameer;
Mendu, Venugopal;
Prasad, P. V. Vara;
Punnuri, Somashekhar M.;
Varshney, Rajeev K.;
Thudi, Mahendar

Publication type:

Article

Proportion of parental genomes in hybrids Allium cepa × A. roylei determines which one becomes dominant.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70016

By:

Kopecký, David;
Duchoslav, Martin;
Scholten, Olga;
Kneřová, Jana;
Szecówka, Marek

Publication type:

Article

Diversity of cereal rye (Secale cereale) germplasm in the Southeast United States.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.70008

By:

Brzozowski, Lauren J.;
Phillips, Timothy D.;
Van Sanford, David A.

Publication type:

Article

Introgression of genes associated with yield enhancement and resistance against bacterial leaf blight and blast diseases into an elite rice variety, Jaya.

Published in:

Plant Genome, 2025, v. 18, n. 2, p. 1, doi. 10.1002/tpg2.20555

By:

Dileep Kumar, G. D.;
Abdul Fiyaz, R.;
Chaithanya, Kasarla;
Darmagaru, Shivani;
Viswanatha, K. P.;
Patwari, Payal;
Bupalli, Sathwik;
Chimote, V. P.;
Raghuwanshi, K. S.;
Kousik, M. B. V. N.;
Rapaka Percy, V. S.;
Bharath, M.;
Laha, G. S.;
Aravind Kumar, J.;
Basavaraj, K.;
Subba Rao, L. V.;
Sundaram, R. M.

Publication type:

Article