Works matching IS 17598753 AND DT 2019 AND VI 10 AND IP 1

Results: 53

Identification of charged amino acids required for nuclear localization of human L1 ORF1 protein.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0159-2

By:

Freeman, B. T.;
Sokolowski, M.;
Roy-Engel, A. M.;
Smither, M. E.;
Belancio, V. P.

Publication type:

Article

Insertion of a chimeric retrotransposon sequence in mouse Axin1 locus causes metastable kinky tail phenotype.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0162-7

By:

Wang, Zhuqing;
McSwiggin, Hayden;
Newkirk, Simon J.;
Wang, Yue;
Oliver, Daniel;
Tang, Chong;
Lee, Sandy;
Wang, Shawn;
Yuan, Shuiqiao;
Zheng, Huili;
Ye, Ping;
An, Wenfeng;
Yan, Wei

Publication type:

Article

Characterization of a relaxase belonging to the MOB<sub>T</sub> family, a widespread family in Firmicutes mediating the transfer of ICEs.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0160-9

By:

Soler, Nicolas;
Robert, Emilie;
Chauvot de Beauchêne, Isaure;
Monteiro, Philippe;
Libante, Virginie;
Maigret, Bernard;
Staub, Johan;
Ritchie, David W.;
Guédon, Gérard;
Payot, Sophie;
Devignes, Marie-Dominique;
Leblond-Bourget, Nathalie

Publication type:

Article

Human transposons are an abundant supply of transcription factor binding sites and promoter activities in breast cancer cell lines.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0158-3

By:

Jiang, Jiayue-Clara;
Upton, Kyle R.

Publication type:

Article

Features of a novel protein, rusticalin, from the ascidian Styela rustica reveal ancestral horizontal gene transfer event.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0146-7

By:

Daugavet, Maria A.;
Shabelnikov, Sergey;
Shumeev, Alexander;
Shaposhnikova, Tatiana;
Adonin, Leonid S.;
Podgornaya, Olga

Publication type:

Article

A benchmark of transposon insertion detection tools using real data.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. 1, doi. 10.1186/s13100-019-0197-9

By:

Vendrell-Mir, Pol;
Barteri, Fabio;
Merenciano, Miriam;
González, Josefa;
Casacuberta, Josep M.;
Castanera, Raúl

Publication type:

Article

A re-evaluation of LINE-1 ORF2 expression in LNCaP prostate cancer cells.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. 1, doi. 10.1186/s13100-019-0196-x

By:

Briggs, Erica M.;
Spadafora, Corrado;
Logan, Susan K.

Publication type:

Article

Tools and best practices for retrotransposon analysis using high-throughput sequencing data.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. 1, doi. 10.1186/s13100-019-0192-1

By:

Teissandier, Aurélie;
Servant, Nicolas;
Barillot, Emmanuel;
Bourc'his, Deborah

Publication type:

Article

Nested plant LTR retrotransposons target specific regions of other elements, while all LTR retrotransposons often target palindromes and nucleosome-occupied regions: in silico study.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. 1, doi. 10.1186/s13100-019-0186-z

By:

Jedlicka, Pavel;
Lexa, Matej;
Vanat, Ivan;
Hobza, Roman;
Kejnovsky, Eduard

Publication type:

Article

Nucleotide composition of transposable elements likely contributes to AT/GC compositional homogeneity of teleost fish genomes.

Published in:

2019

By:

Symonová, Radka;
Suh, Alexander

Publication type:

Letter

LTR_FINDER_parallel: parallelization of LTR_FINDER enabling rapid identification of long terminal repeat retrotransposons.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. 1, doi. 10.1186/s13100-019-0193-0

By:

Ou, Shujun;
Jiang, Ning

Publication type:

Article

Stowaway miniature inverted repeat transposable elements are important agents driving recent genomic diversity in wild and cultivated carrot.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0190-3

By:

Macko-Podgórni, Alicja;
Stelmach, Katarzyna;
Kwolek, Kornelia;
Grzebelus, Dariusz

Publication type:

Article

Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0187-y

By:

Walker, Jerilyn A.;
Jordan, Vallmer E.;
Storer, Jessica M.;
Steely, Cody J.;
Gonzalez-Quiroga, Paulina;
Beckstrom, Thomas O.;
Rewerts, Lydia C.;
St. Romain, Corey P.;
Rockwell, Catherine E.;
Rogers, Jeffrey;
Jolly, Clifford J.;
Konkel, Miriam K.;
The Baboon Genome Analysis Consortium;
Harris, R. Alan;
Raveendran, Muthuswamy;
Liu, Yue;
Murali, Shwetha;
Vilgalys, Tauras P.;
Thomas, Gregg W. C.;
Pagel, Kymberleigh A.

Publication type:

Article

A genomic survey of transposable elements in the choanoflagellate Salpingoeca rosetta reveals selection on codon usage.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0189-9

By:

Southworth, Jade;
Grace, C. Alastair;
Marron, Alan O.;
Fatima, Nazeefa;
Carr, Martin

Publication type:

Article

Incomer, a DD36E family of Tc1/mariner transposons newly discovered in animals.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0188-x

By:

Sang, Yatong;
Gao, Bo;
Diaby, Mohamed;
Zong, Wencheng;
Chen, Cai;
Shen, Dan;
Wang, Saisai;
Wang, Yali;
Ivics, Zoltán;
Song, Chengyi

Publication type:

Article

High frequency of horizontal transfer in Jockey families (LINE order) of drosophilids.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0184-1

By:

Tambones, Izabella L.;
Haudry, Annabelle;
Simão, Maryanna C.;
Carareto, Claudia M. A.

Publication type:

Article

Sex and the TEs: transposable elements in sexual development and function in animals.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0185-0

By:

Dechaud, Corentin;
Volff, Jean-Nicolas;
Schartl, Manfred;
Naville, Magali

Publication type:

Article

Correction to: Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements.

Published in:

2019

By:

Chung, Nicky;
Jonaid, G. M.;
Quinton, Sophia;
Ross, Austin;
Sexton, Corinne E.;
Alberto, Adrian;
Clymer, Cody;
Churchill, Daphnie;
Navarro Leija, Omar;
Han, Mira V.

Publication type:

Correction Notice

The Transposon Registry.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0182-3

By:

Tansirichaiya, Supathep;
Rahman, Md. Ajijur;
Roberts, Adam P.

Publication type:

Article

Transcriptome analyses of tumor-adjacent somatic tissues reveal genes co-expressed with transposable elements.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0180-5

By:

Chung, Nicky;
Jonaid, G. M.;
Quinton, Sophia;
Ross, Austin;
Sexton, Corinne E.;
Alberto, Adrian;
Clymer, Cody;
Churchill, Daphnie;
Navarro Leija, Omar;
Han, Mira V.

Publication type:

Article

Characterization of the endogenous retrovirus insertion in CYP19A1 associated with henny feathering in chicken.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0181-4

By:

Li, Jingyi;
Davis, Brian W.;
Jern, Patric;
Dorshorst, Ben. J.;
Siegel, Paul B.;
Andersson, Leif

Publication type:

Article

Variable genome evolution in fungi after transposon-mediated amplification of a housekeeping gene.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0177-0

By:

Dhillon, Braham;
Kema, Gert H. J.;
Hamelin, Richard C.;
Bluhm, Burt H.;
Goodwin, Stephen B.

Publication type:

Article

A human endogenous retrovirus encoded protease potentially cleaves numerous cellular proteins.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0178-z

By:

Rigogliuso, Giuseppe;
Biniossek, Martin L.;
Goodier, John L.;
Mayer, Bettina;
Pereira, Gavin C.;
Schilling, Oliver;
Meese, Eckart;
Mayer, Jens

Publication type:

Article

Nuclear export signal (NES) of transposases affects the transposition activity of mariner-like elements Ppmar1 and Ppmar2 of moso bamboo.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0179-y

By:

Ramakrishnan, Muthusamy;
Zhou, Ming-Bing;
Pan, Chun-Fang;
Hänninen, Heikki;
Tang, Ding-Qin;
Vinod, Kunnummal Kurungara

Publication type:

Article

Study of VIPER and TATE in kinetoplastids and the evolution of tyrosine recombinase retrotransposons.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0175-2

By:

Ribeiro, Yasmin Carla;
Robe, Lizandra Jaqueline;
Veluza, Danila Syriani;
dos Santos, Cyndia Mara Bezerra;
Lopes, Ana Luisa Kalb;
Krieger, Marco Aurélio;
Ludwig, Adriana

Publication type:

Article

Convergence in LINE-1 nucleotide variations can benefit redundantly forming triplexes with lncRNA in mammalian X-chromosome inactivation.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0173-4

By:

Matsuno, Yoko;
Yamashita, Takefumi;
Wagatsuma, Michiru;
Yamakage, Hajime

Publication type:

Article

Diseases of the nERVous system: retrotransposon activity in neurodegenerative disease.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0176-1

By:

Tam, Oliver H.;
Ostrow, Lyle W.;
Gale Hammell, Molly

Publication type:

Article

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0174-3

By:

Puurand, Tarmo;
Kukuškina, Viktoria;
Pajuste, Fanny-Dhelia;
Remm, Maido

Publication type:

Article

Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0171-6

By:

Legrand, Sylvain;
Caron, Thibault;
Maumus, Florian;
Schvartzman, Sol;
Quadrana, Leandro;
Durand, Eléonore;
Gallina, Sophie;
Pauwels, Maxime;
Mazoyer, Clément;
Huyghe, Lucie;
Colot, Vincent;
Hanikenne, Marc;
Castric, Vincent

Publication type:

Article

Paired-end mappability of transposable elements in the human genome.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0172-5

By:

Sexton, Corinne E.;
Han, Mira V.

Publication type:

Article

flam piRNA precursors channel from the nucleus to the cytoplasm in a temporally regulated manner along Drosophila oogenesis.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0170-7

By:

Dennis, Cynthia;
Brasset, Emilie;
Vaury, Chantal

Publication type:

Article

Amplification of miniature inverted-repeat transposable elements and the associated impact on gene regulation and alternative splicing in mulberry (Morus notabilis).

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0169-0

By:

Xin, Youchao;
Ma, Bi;
Xiang, Zhonghuai;
He, Ningjia

Publication type:

Article

A mobile restriction modification system consisting of methylases on the IncA/C plasmid.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0168-1

By:

Wang, Ruibai;
Lou, Jing;
Li, Jie

Publication type:

Article

Characterization of a novel Helitron family in insect genomes: insights into classification, evolution and horizontal transfer.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0165-4

By:

Han, Guangjie;
Zhang, Nan;
Xu, Jian;
Jiang, Heng;
Ji, Caihong;
Zhang, Ze;
Song, Qisheng;
Stanley, David;
Fang, Jichao;
Wang, Jianjun

Publication type:

Article

Horizontal transfer of a retrotransposon between parasitic nematodes and the common shrew.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0166-3

By:

Dunemann, Sonja M.;
Wasmuth, James D.

Publication type:

Article

Targeted gene knockin in zebrafish using the 28S rDNA-specific non-LTR-retrotransposon R2Ol.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0167-2

By:

Kuroki-Kami, Azusa;
Nichuguti, Narisu;
Yatabe, Haruka;
Mizuno, Sayaka;
Kawamura, Shoji;
Fujiwara, Haruhiko

Publication type:

Article

Tracing the history of LINE and SINE extinction in sigmodontine rodents.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0164-5

By:

Yang, Lei;
Scott, LuAnn;
Wichman, Holly A.

Publication type:

Article

MGERT: a pipeline to retrieve coding sequences of mobile genetic elements from genome assemblies.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0163-6

By:

Guliaev, Andrei S.;
Semyenova, Seraphima K.

Publication type:

Article

Retrotransposons evolution and impact on lncRNA and protein coding genes in pigs.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0161-8

By:

Chen, Cai;
Wang, Wei;
Wang, Xiaoyan;
Shen, Dan;
Wang, Saisai;
Wang, Yali;
Gao, Bo;
Wimmers, Klaus;
Mao, Jiude;
Li, Kui;
Song, Chengyi

Publication type:

Article

Mouse germ line mutations due to retrotransposon insertions.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0157-4

By:

Gagnier, Liane;
Belancio, Victoria P.;
Mager, Dixie L.

Publication type:

Article

Transcriptionally promiscuous "blurry" promoters in Tc1/mariner transposons allow transcription in distantly related genomes.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0155-6

By:

Palazzo, Antonio;
Lorusso, Patrizio;
Miskey, Csaba;
Walisko, Oliver;
Gerbino, Andrea;
Marobbio, Carlo Marya Thomas;
Ivics, Zoltán;
Marsano, René Massimiliano

Publication type:

Article

Evolution of Mutator transposable elements across eukaryotic diversity.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0153-8

By:

Dupeyron, Mathilde;
Singh, Kumar S.;
Bass, Chris;
Hayward, Alexander

Publication type:

Article

TE studies in Japan: the fourth Japanese meeting on host–transposon interactions.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0154-7

By:

Ichiyanagi, Kenji;
Saito, Kuniaki

Publication type:

Article

A unique cluster of roo insertions in the promoter region of a stress response gene in Drosophila melanogaster.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0152-9

By:

Merenciano, Miriam;
Iacometti, Camillo;
González, Josefa

Publication type:

Article

Subtype classification and functional annotation of L1Md retrotransposon promoters.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0156-5

By:

Zhou, Meng;
Smith, Andrew D.

Publication type:

Article

The impact of transposable element activity on therapeutically relevant human stem cells.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0151-x

By:

Schumann, Gerald G.;
Fuchs, Nina V.;
Tristán-Ramos, Pablo;
Sebe, Attila;
Ivics, Zoltán;
Heras, Sara R.

Publication type:

Article

The toxic guardians — multiple toxin-antitoxin systems provide stability, avoid deletions and maintain virulence genes of Pseudomonas syringae virulence plasmids.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0149-4

By:

Bardaji, Leire;
Añorga, Maite;
Echeverría, Myriam;
Ramos, Cayo;
Murillo, Jesús

Publication type:

Article

RepetDB: a unified resource for transposable element references.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0150-y

By:

Amselem, Joëlle;
Cornut, Guillaume;
Choisne, Nathalie;
Alaux, Michael;
Alfama-Depauw, Françoise;
Jamilloux, Véronique;
Maumus, Florian;
Letellier, Thomas;
Luyten, Isabelle;
Pommier, Cyril;
Adam-Blondon, Anne-Françoise;
Quesneville, Hadi

Publication type:

Article

Retrophylogenomics in rorquals indicate large ancestral population sizes and a rapid radiation.

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-018-0143-2

By:

Lammers, Fritjof;
Blumer, Moritz;
Rücklé, Cornelia;
Nilsson, Maria A.

Publication type:

Article

The landscape of transposable elements and satellite DNAs in the genome of a dioecious plant spinach (Spinacia oleracea L.).

Published in:

Mobile DNA, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13100-019-0147-6

By:

Li, Shu-Fen;
Guo, Yu-Jiao;
Li, Jia-Rong;
Zhang, Dong-Xu;
Wang, Bing-Xiao;
Li, Ning;
Deng, Chuan-Liang;
Gao, Wu-Jun

Publication type:

Article