Works matching IS 17580463 AND DT 2024 AND VI 2024

Results: 129

Probe my Pathway (PmP): a portal to explore the chemical coverage of the human Reactome.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae116
By:
- Kwak, Haejin Angela;
- Liu, Lihua;
- Schapira, Matthieu
Publication type:
Article
FatPlants: a comprehensive information system for lipid-related genes and metabolic pathways in plants.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae074
By:
- Xu, Chunhui;
- Shaw, Trey;
- Choppararu, Sai Akhil;
- Lu, Yiwei;
- Farooq, Shaik Naveed;
- Qin, Yongfang;
- Hudson, Matt;
- Weekley, Brock;
- Fisher, Michael;
- He, Fei;
- Nascimento, Jose Roberto Da Silva;
- Wergeles, Nicholas;
- Joshi, Trupti;
- Bates, Philip D;
- Koo, Abraham J;
- Allen, Doug K;
- Cahoon, Edgar B;
- Thelen, Jay J;
- Xu, Dong
Publication type:
Article
MIAMI-AD (Methylation in Aging and Methylation in AD): an integrative knowledgebase that facilitates explorations of DNA methylation across sex, aging, and Alzheimer's disease.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae061
By:
- Lukacsovich, David;
- O'Shea, Deirdre;
- Huang, Hanchen;
- Zhang, Wei;
- Young, Juan;
- Chen, X Steven;
- Dietrich, Sven-Thorsten;
- Kunkle, Brian;
- Martin, Eden;
- Wang, Lily
Publication type:
Article
GeniePool 2.0: advancing variant analysis through CHM13-T2T, AlphaMissense, gnomAD V4 integration, and variant co-occurrence queries.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae130
By:
- Weintraub, Grisha;
- Hadar, Noam;
- Gudes, Ehud;
- Dolev, Shlomi;
- Birk, Ohad S
Publication type:
Article
The Genomic SSR Millets Database (GSMDB): enhancing genetic resources for sustainable agriculture.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae114
By:
- Kumar, Sonu;
- Singh, Sangeeta;
- Kumar, Rakesh;
- Gupta, Dinesh
Publication type:
Article
scEccDNAdb: an integrated single-cell eccDNA resource for human and mouse.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae126
By:
- Wang, Wenqing;
- Zhao, Xinyu;
- Ma, Tianyu;
- Zhong, Tengwei;
- Zheng, Junnuo;
- Guo, Zhiyun
Publication type:
Article
JTIS: enhancing biomedical document-level relation extraction through joint training with intermediate steps.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae125
By:
- Li, Jiru;
- Pan, Dinghao;
- Yang, Zhihao;
- Sun, Yuanyuan;
- Lin, Hongfei;
- Wang, Jian
Publication type:
Article
AthRiboNC: an Arabidopsis database for ncRNAs with coding potential revealed from ribosome profiling.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae123
By:
- Shen, Yi;
- Liu, Liya;
- Liu, Enyan;
- Li, Sida;
- Orlov, Yuriy;
- Ivanisenko, Vladimir;
- Chen, Ming
Publication type:
Article
MiCK: a database of gut microbial genes linked with chemoresistance in cancer patients.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae124
By:
- Shahzaib, Muhammad;
- Muaz, Muhammad;
- Zubair, Muhammad Hasnain;
- Kayani, Masood Ur Rehman
Publication type:
Article
AneRBC dataset: a benchmark dataset for computer-aided anemia diagnosis using RBC images.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae120
By:
- Shahzad, Muhammad;
- Shirazi, Syed Hamad;
- Yaqoob, Muhammad;
- Khan, Zakir;
- Rasheed, Assad;
- Sheikh, Israr Ahmed;
- Hayat, Asad;
- Zhou, Huiyu
Publication type:
Article
The text2term tool to map free-text descriptions of biomedical terms to ontologies.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae119
By:
- Gonçalves, Rafael S;
- Payne, Jason;
- Tan, Amelia;
- Benitez, Carmen;
- Haddock, Jamie;
- Gentleman, Robert
Publication type:
Article
Genome-wide identification of SSR markers from coding regions for endangered Argania spinosa L. skeels and construction of SSR database: AsSSRdb.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae118
By:
- Rabeh, Karim;
- Mghazli, Najoua;
- Gaboun, Fatima;
- Filali-Maltouf, Abdelkarim;
- Sbabou, Laila;
- Belkadi, Bouchra
Publication type:
Article
Toward clearer recognition and easier usefulness: development of a cross-lingual atherosclerotic cerebrovascular disease ontology.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae117
By:
- Ma, Hetong;
- Shen, Liu;
- Wang, Jiayang;
- Wang, Shilong;
- Wang, Min;
- Wang, Meng;
- Li, Zixiao;
- Li, Jiao
Publication type:
Article
Peptipedia v2.0: a peptide sequence database and user-friendly web platform. A major update.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae113
By:
- Cabas-Mora, Gabriel;
- Daza, Anamaría;
- Soto-García, Nicole;
- Garrido, Valentina;
- Alvarez, Diego;
- Navarrete, Marcelo;
- Sarmiento-Varón, Lindybeth;
- Yañez, Julieta H Sepúlveda;
- Davari, Mehdi D;
- Cadet, Frederic;
- Olivera-Nappa, Álvaro;
- Uribe-Paredes, Roberto;
- Medina-Ortiz, David
Publication type:
Article
athisomiRDB: A comprehensive database of Arabidopsis isomiRs.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae115
By:
- Vivek, A T;
- Arya, Ajay;
- Swain, Supriya P;
- Kumar, Shailesh
Publication type:
Article
Transformer-based approach for symptom recognition and multilingual linking.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae090
By:
- Vassileva, Sylvia;
- Grazhdanski, Georgi;
- Koychev, Ivan;
- Boytcheva, Svetla
Publication type:
Article
Interactive tools for functional annotation of bacterial genomes.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae089
By:
- Price, Morgan N;
- Arkin, Adam P
Publication type:
Article
ELiAH: the atlas of E3 ligases in human tissues for targeted protein degradation with reduced off-target effect.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae111
By:
- Paik, Hyojung;
- Oh, Chunryong;
- Hussain, Sajid;
- Seo, Sangjae;
- Park, Soon Woo;
- Ko, Tae Lyun;
- Lee, Ari
Publication type:
Article
Correction to: The overview of the BioRED (Biomedical Relation Extraction Dataset) track at BioCreative VIII.
Published in:
2024
Publication type:
Correction Notice
StopKB: a comprehensive knowledgebase for nonsense suppression therapies.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae108
By:
- Haas, Nicolas;
- Thompson, Julie Dawn;
- Renaud, Jean-Paul;
- Chennen, Kirsley;
- Poch, Olivier
Publication type:
Article
RettDb: the Rett syndrome omics database to navigate the Rett syndrome genomic landscape.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae109
By:
- Cillari, Nico;
- Neri, Giuseppe;
- Pisanti, Nadia;
- Milazzo, Paolo;
- Borello, Ugo
Publication type:
Article
Transverse aortic constriction multi-omics analysis uncovers pathophysiological cardiac molecular mechanisms.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae060
By:
- Gjerga, Enio;
- Dewenter, Matthias;
- Britto-Borges, Thiago;
- Grosso, Johannes;
- Stein, Frank;
- Eschenbach, Jessica;
- Rettel, Mandy;
- Backs, Johannes;
- Dieterich, Christoph
Publication type:
Article
The relational modeling of hierarchical data in biodiversity databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae107
By:
- Novotný, Petr;
- Wild, Jan
Publication type:
Article
Is metadata of articles about COVID-19 enough for multilabel topic classification task?
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae106
By:
- Xu, Shuo;
- Zhang, Yuefu;
- Chen, Liang;
- An, Xin
Publication type:
Article
SesamumGDB: a comprehensive platform for Sesamum genetics and genomics analysis.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae105
By:
- Hengchun, Cao;
- Hui, Guo;
- Weifei, Yang;
- Guiting, Li;
- Ming, Ju;
- Yinghui, Duan;
- Qiuzhen, Tian;
- Qin, Ma;
- Xiaoxu, Feng;
- Zhanyou, Zhang;
- Haiyang, Zhang;
- Hongmei, Miao
Publication type:
Article
Optimized biomedical entity relation extraction method with data augmentation and classification using GPT-4 and Gemini.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae104
By:
- Phan, Cong-Phuoc;
- Phan, Ben;
- Chiang, Jung-Hsien
Publication type:
Article
PheNormGPT: a framework for extraction and normalization of key medical findings.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae103
By:
- Soysal, Ekin;
- Roberts, Kirk
Publication type:
Article
CPMKG: a condition-based knowledge graph for precision medicine.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae102
By:
- Yang, Jiaxin;
- Zhuang, Xinhao;
- Li, Zhenqi;
- Xiong, Gang;
- Xu, Ping;
- Ling, Yunchao;
- Zhang, Guoqing
Publication type:
Article
An analysis of FRE @ BC8 SympTEMIST track: named entity recognition.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae101
By:
- Martinez, Ander;
- García-Santa, Nuria
Publication type:
Article
SMCVdb: a database of experimental cellular toxicity information for drug candidate molecules.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae100
By:
- Pandey, Abhay Deep;
- Sharma, Ghanshyam;
- Sharma, Anshula;
- Vrati, Sudhanshu;
- Nair, Deepak T
Publication type:
Article
collectNET: a web server for integrated inference of cell–cell communication network.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae098
By:
- Pan, Yan;
- Gao, Zijing;
- Cui, Xuejian;
- Li, Zhen;
- Jiang, Rui
Publication type:
Article
AbAMPdb: a database of Acinetobacter baumannii specific antimicrobial peptides.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae096
By:
- Anwer, Farha;
- Navid, Ahmad;
- Faiz, Fiza;
- Haider, Uzair;
- Nasir, Samavi;
- Farooq, Muhammad;
- Zahra, Maryam;
- Bano, Anosh;
- Bashir, Hafiza Hira;
- Ahmad, Madiha;
- Abbas, Syeda Aleena;
- Room, Shah E;
- Saeed, Muhammad Tariq;
- Ali, Amjad
Publication type:
Article
RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae095
By:
- Nastou, Katerina;
- Mehryary, Farrokh;
- Ohta, Tomoko;
- Luoma, Jouni;
- Pyysalo, Sampo;
- Jensen, Lars Juhl
Publication type:
Article
Automatic extraction of transcriptional regulatory interactions of bacteria from biomedical literature using a BERT-based approach.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae094
By:
- Varela-Vega, Alfredo;
- Posada-Reyes, Ali-Berenice;
- Méndez-Cruz, Carlos-Francisco
Publication type:
Article
Automated annotation of scientific texts for ML-based keyphrase extraction and validation.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae093
By:
- Amusat, Oluwamayowa O;
- Hegde, Harshad;
- Mungall, Christopher J;
- Giannakou, Anna;
- Byers, Neil P;
- Gunter, Dan;
- Fagnan, Kjiersten;
- Ramakrishnan, Lavanya
Publication type:
Article
PeptiHub: a curated repository of precisely annotated cancer-related peptides with advanced utilities for peptide exploration and discovery.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae092
By:
- Zareei, Sara;
- Khorsand, Babak;
- Dantism, Alireza;
- Zareei, Neda;
- Asgharzadeh, Fereshteh;
- Zahraee, Shadi Shams;
- Kashan, Samane Mashreghi;
- Hekmatirad, Shirin;
- Amini, Shila;
- Ghasemi, Fatemeh;
- Moradnia, Maryam;
- Vaghf, Atena;
- Hemmatpour, Anahid;
- Hourfar, Hamdam;
- Niknia, Soudabeh;
- Johari, Ali;
- Salimi, Fatemeh;
- Fariborzi, Neda;
- Shojaei, Zohreh;
- Asiaei, Elaheh
Publication type:
Article
Influenza sequence validation and annotation using VADR.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae091
By:
- Calhoun, Vincent C;
- Hatcher, Eneida L;
- Yankie, Linda;
- Nawrocki, Eric P
Publication type:
Article
Functional implications of glycans and their curation: insights from the workshop held at the 16th Annual International Biocuration Conference in Padua, Italy.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae073
By:
- Martinez, Karina;
- Agirre, Jon;
- Akune, Yukie;
- Aoki-Kinoshita, Kiyoko F;
- Arighi, Cecilia;
- Axelsen, Kristian B;
- Bolton, Evan;
- Bordeleau, Emily;
- Edwards, Nathan J;
- Fadda, Elisa;
- Feizi, Ten;
- Hayes, Catherine;
- Ives, Callum M;
- Joshi, Hiren J;
- Prasad, Khakurel Krishna;
- Kossida, Sofia;
- Lisacek, Frederique;
- Liu, Yan;
- Lütteke, Thomas;
- Ma, Junfeng
Publication type:
Article
Autoinhibited Protein Database: a curated database of autoinhibitory domains and their autoinhibition mechanisms.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae085
By:
- Cho, Daeahn;
- Lee, Hyang-Mi;
- Kim, Ji Ah;
- Song, Jae Gwang;
- Hwang, Su-hee;
- Lee, Bomi;
- Park, Jinsil;
- Tran, Kha Mong;
- Kim, Jiwon;
- Vo, Phuong Ngoc Lam;
- Bae, Jooeun;
- Pimt, Teerapat;
- Lee, Kangseok;
- Gsponer, Jörg;
- Kim, Hyung Wook;
- Na, Dokyun
Publication type:
Article
Autophagy3D: a comprehensive autophagy structure database.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae088
By:
- Neha;
- Castin, Jesu;
- Fatihi, Saman;
- Gahlot, Deepanshi;
- Arun, Akanksha;
- Thukral, Lipi
Publication type:
Article
Recognition and normalization of multilingual symptom entities using in-domain-adapted BERT models and classification layers.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae087
By:
- Gallego, Fernando;
- Veredas, Francisco J
Publication type:
Article
MACSFeD—a database of mosquito acoustic communication and swarming features.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae086
By:
- Loh, YuMin M;
- Su, Matthew P;
- Haruni, Kayla G;
- Kamikouchi, Azusa
Publication type:
Article
Acupuncture indication knowledge bases: meridian entity recognition and classification based on ACUBERT.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae083
By:
- Xu, TianCheng;
- Wen, Jing;
- Wang, Lei;
- Huang, YueYing;
- Zhu, ZiJing;
- Zhu, Qian;
- Fang, Yi;
- Yang, ChengBiao;
- Xia, YouBing
Publication type:
Article
The Australian Biosecurity Genomic Database: a new resource for high-throughput sequencing analysis based on the National Notifiable Disease List of Terrestrial Animals.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae084
By:
- Batovska, Jana;
- Brohier, Natasha D;
- Mee, Peter T;
- Constable, Fiona E;
- Rodoni, Brendan C;
- Lynch, Stacey E
Publication type:
Article
Landscape of racial and ethnic health disparities in the All of Us Research Program.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae082
By:
- Lam, Vincent;
- Sharma, Shivam;
- Spouge, John L;
- Jordan, I. King;
- Mariño-Ramírez, Leonardo
Publication type:
Article
ncStem: a comprehensive resource of curated and predicted ncRNAs in cancer stemness.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae081
By:
- Liu, Hui;
- Zhang, Nan;
- Jia, Yijie;
- Wang, Jun;
- Ye, Aokun;
- Yang, Siru;
- Zhou, Honghan;
- Lv, Yingli;
- Xu, Chaohan;
- Wang, Shuyuan
Publication type:
Article
The biomedical relationship corpus of the BioRED track at the BioCreative VIII challenge and workshop.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae071
By:
- Islamaj, Rezarta;
- Wei, Chih-Hsuan;
- Lai, Po-Ting;
- Luo, Ling;
- Coss, Cathleen;
- Kochar, Preeti Gokal;
- Miliaras, Nicholas;
- Rodionov, Oleg;
- Sekiya, Keiko;
- Trinh, Dorothy;
- Whitman, Deborah;
- Lu, Zhiyong
Publication type:
Article
Global Globin Network and adopting genomic variant database requirements for thalassemia.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae080
By:
- Halim-Fikri, Hashim;
- Zulkipli, Ninie Nadia;
- Alauddin, Hafiza;
- Bento, Celeste;
- Lederer, Carsten W;
- Kountouris, Petros;
- Kleanthous, Marina;
- Hernaningsih, Yetti;
- Thong, Meow-Keong;
- Mahmood, Muhammad Hamdi;
- Yasin, Norafiza Mohd;
- Esa, Ezalia;
- Elion, Jacques;
- Coviello, Domenico;
- Raja-Sabudin, Raja-Zahratul-Azma;
- El-Kamah, Ghada;
- Burn, John;
- Yusoff, Narazah Mohd;
- Ramesar, Raj;
- Zilfalil, Bin Alwi
Publication type:
Article
Integrating deep learning architectures for enhanced biomedical relation extraction: a pipeline approach.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae079
By:
- Sarol, M Janina;
- Hong, Gibong;
- Guerra, Evan;
- Kilicoglu, Halil
Publication type:
Article
GMMID: genetically modified mice information database.
Published in:
Database: The Journal of Biological Databases & Curation, 2024, v. 2024, p. 1, doi. 10.1093/database/baae078
By:
- Xu, Menglin;
- Fang, Minghui;
- Chen, Qiyang;
- Xiao, Wenjun;
- Xu, Zhixuan;
- Cai, Bao;
- Zhao, Zhenyang;
- Wang, Tao;
- Zhu, Zhu;
- Chen, Yingshan;
- Zhu, Yue;
- Dai, Mingzhou;
- Jiang, Tiancheng;
- Li, Xinyi;
- Chun, Siuwing;
- Zhou, Runhua;
- Li, Yafei;
- Gou, Yueyue;
- He, Jingjing;
- Luo, Lin
Publication type:
Article