Works matching IS 17580463 AND DT 2021 AND VI 2021

Results: 69

OBO Foundry in 2021: operationalizing open data principles to evaluate ontologies.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab069
By:
- Jackson, Rebecca;
- Matentzoglu, Nicolas;
- Overton, James A;
- Vita, Randi;
- Balhoff, James P;
- Buttigieg, Pier Luigi;
- Carbon, Seth;
- Courtot, Melanie;
- Diehl, Alexander D;
- Dooley, Damion M;
- Duncan, William D;
- Harris, Nomi L;
- Haendel, Melissa A;
- Lewis, Suzanna E;
- Natale, Darren A;
- Osumi-Sutherland, David;
- Ruttenberg, Alan;
- Schriml, Lynn M;
- Smith, Barry;
- Stoeckert Jr., Christian J
Publication type:
Article
Mining drug–target and drug–adverse drug reaction databases to identify target–adverse drug reaction relationships.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab068
By:
- Galletti, Cristiano;
- Bota, Patricia Mirela;
- Oliva, Baldo;
- Fernandez-Fuentes, Narcis
Publication type:
Article
EpiSurf: metadata-driven search server for analyzing amino acid changes within epitopes of SARS-CoV-2 and other viral species.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab059
By:
- Bernasconi, Anna;
- Cilibrasi, Luca;
- Khalaf, Ruba Al;
- Alfonsi, Tommaso;
- Ceri, Stefano;
- Pinoli, Pietro;
- Canakoglu, Arif
Publication type:
Article
MODB: a comprehensive mitochondrial genome database for Mollusca.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab056
By:
- Qu, Jiangyong;
- Xu, Yanran;
- Cui, Yutong;
- Wu, Sen;
- Wang, Lijun;
- Liu, Xiumei;
- Xing, Zhikai;
- Guo, Xiaoyu;
- Wang, Shanshan;
- Li, Ruoran;
- Sun, Xiaoyue;
- Li, Xiang;
- Wang, Xiyue;
- Liu, Tao;
- Wang, Xumin
Publication type:
Article
Gene Ontology curation of the blood–brain barrier to improve the analysis of Alzheimer's and other neurological diseases.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab067
By:
- Saverimuttu, Shirin C C;
- Kramarz, Barbara;
- Rodríguez-López, Milagros;
- Garmiri, Penelope;
- Attrill, Helen;
- Thurlow, Katherine E;
- Makris, Marios;
- Pinheiro, Sandra de Miranda;
- Orchard, Sandra;
- Lovering, Ruth C
Publication type:
Article
MMV-db: vaccinomics and RNA-based therapeutics database for infectious hemorrhagic fever-causing mammarenaviruses.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab063
By:
- Khan, Taimoor;
- Khan, Abbas;
- Wei, Dong-Qing
Publication type:
Article
https://botryosphaeriales.org/, an online platform for up-to-date classification and account of taxa of Botryosphaeriales.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab061
By:
- Wu, N a;
- Dissanayake, Asha J;
- Manawasinghe, Ishara S;
- Rathnayaka, Achala R;
- Liu, Jian-Kui;
- Phillips, Alan j.l;
- Promputtha, Itthayakorn;
- Hyde, Kevin D
Publication type:
Article
Food Enzyme Database (FEDA): a web application gathering information about food enzyme preparations available on the European market.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab060
By:
- Deckers, Marie;
- Braeckel, Julien Van;
- Vanneste, Kevin;
- Deforce, Dieter;
- Fraiture, Marie-Alice;
- Roosens, Nancy h.c
Publication type:
Article
HBFP: a new repository for human body fluid proteome.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab065
By:
- Shao, Dan;
- Huang, Lan;
- Wang, Yan;
- Cui, Xueteng;
- Li, Yufei;
- Wang, Yao;
- Ma, Qin;
- Du, Wei;
- Cui, Juan
Publication type:
Article
World Spider Trait database: a centralized global open repository for curated data on spider traits.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab064
By:
- Pekár, Stano;
- Wolff, Jonas O;
- Černecká, Ľudmila;
- Birkhofer, Klaus;
- Mammola, Stefano;
- Lowe, Elizabeth C;
- Fukushima, Caroline S;
- Herberstein, Marie E;
- Kučera, Adam;
- Buzatto, Bruno A;
- Djoudi, El Aziz;
- Domenech, Marc;
- Enciso, Alison Vanesa;
- Espejo, Yolanda M G Piñanez;
- Febles, Sara;
- García, Luis F;
- Gonçalves-Souza, Thiago;
- Isaia, Marco;
- Lafage, Denis;
- Líznarová, Eva
Publication type:
Article
Peptipedia: a user-friendly web application and a comprehensive database for peptide research supported by Machine Learning approach.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab055
By:
- Quiroz, Cristofer;
- Saavedra, Yasna Barrera;
- Armijo-Galdames, Benjamín;
- Amado-Hinojosa, Juan;
- Olivera-Nappa, Álvaro;
- Sanchez-Daza, Anamaria;
- Medina-Ortiz, David
Publication type:
Article
Breeding Information Management System (BIMS): an online resource for crop breeding.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab054
By:
- Jung, Sook;
- Lee, Taein;
- Gasic, Ksenija;
- Campbell, B. Todd;
- Yu, Jing;
- Humann, Jodi;
- Ru, Sushan;
- Edge-Garza, Daniel;
- Hough, Heidi;
- Main, Dorrie
Publication type:
Article
lncExplore: a database of pan-cancer analysis and systematic functional annotation for lncRNAs from RNA-sequencing data.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab053
By:
- Lee, Yi-Wei;
- Chen, Ming;
- Chung, I-Fang;
- Chang, Ting-Yu
Publication type:
Article
nomenclature for echinoderm genes.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab052
By:
- Beatman, Thomas R;
- Buckley, Katherine M;
- Cary, Gregory A;
- Hinman, Veronica F;
- Ettensohn, Charles A
Publication type:
Article
Automatization and self-maintenance of the O-GlcNAcome catalog: a smart scientific database.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab039
By:
- Malard, Florian;
- Wulff-Fuentes, Eugenia;
- Berendt, Rex R;
- Didier, Guillaume;
- Stichelen, Stephanie Olivier-Van
Publication type:
Article
ReMeDy: a platform for integrating and sharing published stem cell research data with a focus on iPSC trials.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab038
By:
- Borziak, Kirill;
- Parvanova, Irena;
- Finkelstein, Joseph
Publication type:
Article
KMDATA: a curated database of reconstructed individual patient-level data from 153 oncology clinical trials.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab037
By:
- Fell, Geoffrey;
- Redd, Robert A;
- Vanderbeek, Alyssa M;
- Rahman, Rifaquat;
- Louv, Bill;
- McDunn, Jon;
- Arfè, Andrea;
- Alexander, Brian M;
- Ventz, Steffen;
- Trippa, Lorenzo
Publication type:
Article
mPPI: a database extension to visualize structural interactome in a one-to-many manner.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab036
By:
- Zhou, Yekai;
- Chen, Hongjun;
- Li, Sida;
- Chen, Ming
Publication type:
Article
Standardization of assay representation in the Ontology for Biomedical Investigations.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab040
By:
- Vita, Randi;
- Zheng, Jie;
- Jackson, Rebecca;
- Dooley, Damion;
- Overton, James A;
- Miller, Mark A;
- Berrios, Daniel C;
- Scheuermann, Richard H;
- He, Yongqun;
- McGinty, Hande Küçük;
- Brochhausen, Mathias;
- Lin, Aisyah Yu;
- Jain, Sagar B;
- Chibucos, Marcus C;
- Judkins, John;
- Giglio, Michelle G;
- Feng, Irene Y;
- Burns, Gully;
- Brush, Matthew H;
- Peters, Bjoern
Publication type:
Article
PostgreSQL Tripal solution for large-scale genotypic and phenotypic data.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab051
By:
- Sanderson, Lacey-Anne;
- Caron, Carolyn T;
- Tan, Reynold L;
- Bett, Kirstin E
Publication type:
Article
Male Infertility Knowledgebase: decoding the genetic and disease landscape.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab049
By:
- Joseph, Shaini;
- Mahale, Smita D
Publication type:
Article
LINPS: a database for cancer-cell-specific perturbations of biological networks.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab048
By:
- Ahmed, Mahmoud;
- Kim, Deok Ryong
Publication type:
Article
Web tools to perform long non-coding RNAs analysis in oncology research.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab047
By:
- Gu, Shixing;
- Zhang, Guangjie;
- Si, Qin;
- Dai, Jiawen;
- Song, Zhen;
- Wang, Yingshuang
Publication type:
Article
Functionathon: a manual data mining workflow to generate functional hypotheses for uncharacterized human proteins and its application by undergraduate students.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab046
By:
- Duek, Paula;
- Mary, Camille;
- Zahn-Zabal, Monique;
- Bairoch, Amos;
- Lane, Lydie
Publication type:
Article
circExp database: an online transcriptome platform for human circRNA expressions in cancers.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab045
By:
- Zhao, Min;
- Liu, Yining;
- Qu, Hong
Publication type:
Article
CNVIntegrate: the first multi-ethnic database for identifying copy number variations associated with cancer.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab044
By:
- Chattopadhyay, Amrita;
- Teoh, Zi Han;
- Wu, Chi-Yun;
- Juang, Jyh-Ming Jimmy;
- Lai, Liang-Chuan;
- Tsai, Mong-Hsun;
- Wu, Chia-Hsin;
- Lu, Tzu-Pin;
- Chuang, Eric Y
Publication type:
Article
Progenetix oncogenomic resource in 2021.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab043
By:
- Huang, Qingyao;
- Carrio-Cordo, Paula;
- Gao, Bo;
- Paloots, Rahel;
- Baudis, Michael
Publication type:
Article
MUSTARD—a comprehensive resource of mutation-specific therapies in cancer.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab042
By:
- Mittal, Gauri;
- I, Anu R;
- Vatsyayan, Aastha;
- Pandhare, Kavita;
- Scaria, Vinod
Publication type:
Article
TIDB: a comprehensive database of trained immunity.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab041
By:
- Cao, Yang;
- Dong, Qingyang;
- Wang, Dan;
- Liu, Ying;
- Zhang, Pengcheng;
- Yu, Xiaobo;
- Niu, Chao
Publication type:
Article
Which methods are the most effective in enabling novice users to participate in ontology creation? A usability study.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab035
By:
- Zhang, Limin;
- Yang, Xingyi;
- Cota, Zuleima;
- Cui, Hong;
- Ford, Bruce;
- Chen, Hsin-liang;
- Macklin, James A;
- Reznicek, Anton;
- Starr, Julian
Publication type:
Article
dbGENVOC: database of GENomic Variants of Oral Cancer, with special reference to India.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab034
By:
- Pradhan, Sanchari;
- Das, Subrata;
- Singh, Animesh K;
- Das, Chitrarpita;
- Basu, Analabha;
- Majumder, Partha P;
- Biswas, Nidhan K
Publication type:
Article
BENviewer: a gene interaction network visualization server based on graph embedding model.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab033
By:
- Liu, Yunqing;
- Zhu, Yunchi;
- He, Chunpeng;
- Lu, Zuhong
Publication type:
Article
MetamORF: a repository of unique short open reading frames identified by both experimental and computational approaches for gene and metagene analyses.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab032
By:
- Choteau, Sebastien A;
- Wagner, Audrey;
- Pierre, Philippe;
- Spinelli, Lionel;
- Brun, Christine
Publication type:
Article
emiRIT: a text-mining-based resource for microRNA information.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab031
By:
- Roychowdhury, Debarati;
- Gupta, Samir;
- Qin, Xihan;
- Arighi, Cecilia N;
- Vijay-Shanker, K
Publication type:
Article
Integration of 1:1 orthology maps and updated datasets into Echinobase.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab030
By:
- Foley, Saoirse;
- Ku, Carolyn;
- Arshinoff, Brad;
- Lotay, Vaneet;
- Karimi, Kamran;
- Vize, Peter D;
- Hinman, Veronica
Publication type:
Article
Application of beta and gamma carbonic anhydrase sequences as tools for identification of bacterial contamination in the whole genome sequence of inbred Wuzhishan minipig (Sus scrofa) annotated in databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab029
By:
- Emameh, Reza Zolfaghari;
- Hosseini, Seyed Nezamedin;
- Parkkila, Seppo
Publication type:
Article
Challenges for FAIR-compliant description and comparison of crop phenotype data with standardized controlled vocabularies.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab028
By:
- Andrés-Hernández, Liliana;
- Halimi, Razlin Azman;
- Mauleon, Ramil;
- Mayes, Sean;
- Baten, Abdul;
- King, Graham J
Publication type:
Article
covid19census: U.S. and Italy COVID-19 metrics and other epidemiological data.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab027
By:
- Zanettini, Claudio;
- Omar, Mohamed;
- Dinalankara, Wikum;
- Imada, Eddie Luidy;
- Colantuoni, Elizabeth;
- Parmigiani, Giovanni;
- Marchionni, Luigi
Publication type:
Article
COVIDOUTCOME—estimating COVID severity based on mutation signatures in the SARS-CoV-2 genome.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab020
By:
- Nagy, Ádám;
- Ligeti, Balázs;
- Szebeni, János;
- Pongor, Sándor;
- Győrffy, Balázs
Publication type:
Article
APICURON: a database to credit and acknowledge the work of biocurators.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab019
By:
- Hatos, András;
- Quaglia, Federica;
- Piovesan, Damiano;
- Tosatto, Silvio C E
Publication type:
Article
BC-TFdb: a database of transcription factor drivers in breast cancer.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab018
By:
- Khan, Abbas;
- Khan, Taimoor;
- Nasir, Syed Nouman;
- Ali, Syed Shujait;
- Suleman, Muhammad;
- Rizwan, Muhammad;
- Waseem, Muhammad;
- Ali, Shahid;
- Zhao, Xia;
- Wei, Dong-Qing
Publication type:
Article
overview of graph databases and their applications in the biomedical domain.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab026
By:
- Timón-Reina, Santiago;
- Rincón, Mariano;
- Martínez-Tomás, Rafael
Publication type:
Article
IBDDB: a manually curated and text-mining-enhanced database of genes involved in inflammatory bowel disease.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab022
By:
- Khan, Farhat;
- Radovanovic, Aleksandar;
- Gojobori, Takashi;
- Kaur, Mandeep
Publication type:
Article
Increasing metadata coverage of SRA BioSample entries using deep learning–based named entity recognition.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab021
By:
- Klie, Adam;
- Tsui, Brian Y;
- Mollah, Shamim;
- Skola, Dylan;
- Dow, Michelle;
- Hsu, Chun-Nan;
- Carter, Hannah
Publication type:
Article
Human IRES Atlas: an integrative platform for studying IRES-driven translational regulation in humans.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab025
By:
- Yang, Tzu-Hsien;
- Wang, Chung-Yu;
- Tsai, Hsiu-Chun;
- Liu, Cheng-Tse
Publication type:
Article
CANNUSE, a database of traditional Cannabis uses—an opportunity for new research.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab024
By:
- Balant, Manica;
- Gras, Airy;
- Gálvez, Francisco;
- Garnatje, Teresa;
- Vallès, Joan;
- Vitales, Daniel
Publication type:
Article
Tripal MegaSearch: a tool for interactive and customizable query and download of big data.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab023
By:
- Jung, Sook;
- Cheng, Chun-Huai;
- Buble, Katheryn;
- Lee, Taein;
- Humann, Jodi;
- Yu, Jing;
- Crabb, James;
- Hough, Heidi;
- Main, Dorrie
Publication type:
Article
Drugmonizome and Drugmonizome-ML: integration and abstraction of small molecule attributes for drug enrichment analysis and machine learning.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab017
By:
- Kropiwnicki, Eryk;
- Evangelista, John E;
- Stein, Daniel J;
- Clarke, Daniel J B;
- Lachmann, Alexander;
- Kuleshov, Maxim V;
- Jeon, Minji;
- Jagodnik, Kathleen M;
- Ma'ayan, Avi
Publication type:
Article
H3ABioNet genomic medicine and microbiome data portals hackathon proceedings.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab016
By:
- Fadlelmola, Faisal M;
- Ghedira, Kais;
- Hamdi, Yosr;
- Hanachi, Mariem;
- Radouani, Fouzia;
- Allali, Imane;
- Kiran, Anmol;
- Zass, Lyndon;
- Alsayed, Nihad;
- Fassatoui, Meriem;
- Samtal, Chaimae;
- Ahmed, Samah;
- Rocha, Jorge Da;
- Chaqsare, Souad;
- Sallam, Reem M;
- Chaouch, Melek;
- Farahat, Mohammed;
- Ssekagiri, Alfred;
- Parker, Ziyaad;
- Adil, Mai
Publication type:
Article
Wormicloud: a new text summarization tool based on word clouds to explore the C. elegans literature.
Published in:
Database: The Journal of Biological Databases & Curation, 2021, v. 2021, p. 1, doi. 10.1093/database/baab015
By:
- Arnaboldi, Valerio;
- Cho, Jaehyoung;
- Sternberg, Paul W
Publication type:
Article