Works matching IS 17580463 AND DT 2020 AND VI 2020

Results: 132

GREG—studying transcriptional regulation using integrative graph databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz162
By:
- Mei, Songqing;
- Huang, Xiaowei;
- Xie, Chengshu;
- Mora, Antonio
Publication type:
Article
Prot2HG: a database of protein domains mapped to the human genome.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz161
By:
- Stanek, David;
- Bis-Brewer, Dana M;
- Saghira, Cima;
- Danzi, Matt C;
- Seeman, Pavel;
- Lassuthova, Petra;
- Zuchner, Stephan
Publication type:
Article
An update on the Symbiotic Genomes Database (SymGenDB): a collection of metadata, genomic, genetic and protein sequences, orthologs and metabolic networks of symbiotic organisms.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz160
By:
- Reyes-Prieto, Mariana;
- Vargas-Chávez, Carlos;
- Llabrés, Mercè;
- Palmer, Pere;
- Latorre, Amparo;
- Moya, Andrés
Publication type:
Article
NipahVR: a resource of multi-targeted putative therapeutics and epitopes for the Nipah virus.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz159
By:
- Gupta, Amit Kumar;
- Kumar, Archit;
- Rajput, Akanksha;
- Kaur, Karambir;
- Dar, Showkat Ahmed;
- Thakur, Anamika;
- Megha, Kirti;
- Kumar, Manoj
Publication type:
Article
A negative storage model for precise but compact storage of genetic variation data.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz158
By:
- Gonzalez-Calderon, Guillermo;
- Liu, Ruizheng;
- Carvajal, Rodrigo;
- Teer, Jamie K
Publication type:
Article
RESTful API for iPTMnet: a resource for protein post-translational modification network discovery.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz157
By:
- Gavali, Sachin;
- Cowart, Julie;
- Chen, Chuming;
- Ross, Karen E;
- Arighi, Cecilia;
- Wu, Cathy H
Publication type:
Article
RBPTD: a database of cancer-related RNA-binding proteins in humans.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz156
By:
- Li, Kun;
- Guo, Zhi-Wei;
- Zhai, Xiang-Ming;
- Yang, Xue-Xi;
- Wu, Ying-Song;
- Liu, Tian-Cai
Publication type:
Article
PLANiTS: a curated sequence reference dataset for plant ITS DNA metabarcoding.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz155
By:
- Banchi, Elisa;
- Ametrano, Claudio G;
- Greco, Samuele;
- Stanković, David;
- Muggia, Lucia;
- Pallavicini, Alberto
Publication type:
Article
RNA CoSSMos 2.0: an improved searchable database of secondary structure motifs in RNA three-dimensional structures.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz153
By:
- Richardson, Katherine E;
- Kirkpatrick, Charles C;
- Znosko, Brent M
Publication type:
Article
Building a pipeline to solicit expert knowledge from the community to aid gene summary curation.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz152
By:
- Antonazzo, Giulia;
- Urbano, Jose M;
- Marygold, Steven J;
- Millburn, Gillian H;
- Brown, Nicholas H
Publication type:
Article
LeukmiR: a database for miRNAs and their targets in acute lymphoblastic leukemia.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz151
By:
- Rawoof, Abdul;
- Swaminathan, Guruprasadh;
- Tiwari, Shrish;
- Nair, Rekha A;
- Kumar, Lekha Dinesh
Publication type:
Article
Ewé: a web-based ethnobotanical database for storing and analysing data.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz144
By:
- Souza, Estevão do Nascimento Fernandes de;
- Hawkins, Julie A
Publication type:
Article
Annotation and curation of the causality information in LncRNADisease.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz150
By:
- Jia, Kaiwen;
- Gao, Yuanxu;
- Shi, Jiangcheng;
- Zhou, Yuan;
- Zhou, Yong;
- Cui, Qinghua
Publication type:
Article
miR-TV: an interactive microRNA Target Viewer for microRNA and target gene expression interrogation for human cancer studies.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz148
By:
- Pan, Chao-Yu;
- Lin, Wen-Chang
Publication type:
Article
Phenotype–genotype network construction and characterization: a case study of cardiovascular diseases and associated non-coding RNAs.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz147
By:
- Wu, Rongrong;
- Lin, Yuxin;
- Liu, Xingyun;
- Zhan, Chaoying;
- He, Hongxin;
- Shi, Manhong;
- Jiang, Zhi;
- Shen, Bairong
Publication type:
Article
KRGDB: the large-scale variant database of 1722 Koreans based on whole genome sequencing.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz146
By:
- Jung, Kwang Su;
- Hong, Kyung-Won;
- Jo, Hyun Youn;
- Choi, Jongpill;
- Ban, Hyo-Jeong;
- Cho, Seong Beom;
- Chung, Myungguen
Publication type:
Article
Strengthening of banana breeding through data digitalization.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz145
By:
- Kumar, B Vignesh;
- Backiyarani, S;
- Chandrasekar, A;
- Saranya, S;
- Ramajayam, D;
- Saraswathi, M S;
- Durai, P;
- Kalpana, S;
- Uma, S
Publication type:
Article
WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz149
By:
- Snoek, Basten L;
- Sterken, Mark G;
- Hartanto, Margi;
- Zuilichem, Albert-Jan van;
- Kammenga, Jan E;
- Ridder, Dick de;
- Nijveen, Harm
Publication type:
Article
Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz143
By:
- Condon, B;
- Almsaeed, A;
- Buehler, S;
- Childers, C P;
- Ficklin, S P;
- Staton, M E;
- Poelchau, M F
Publication type:
Article
ChIPSummitDB: a ChIP-seq-based database of human transcription factor binding sites and the topological arrangements of the proteins bound to them.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz141
By:
- Czipa, Erik;
- Schiller, Mátyás;
- Nagy, Tibor;
- Kontra, Levente;
- Steiner, László;
- Koller, Júlia;
- Pálné-Szén, Orsolya;
- Barta, Endre
Publication type:
Article
Human Breathomics Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz139
By:
- Kuo, Tien-Chueh;
- Tan, Cheng-En;
- Wang, San-Yuan;
- Lin, Olivia A;
- Su, Bo-Han;
- Hsu, Ming-Tsung;
- Lin, Jessica;
- Cheng, Yu-Yen;
- Chen, Ciao-Sin;
- Yang, Yu-Chieh;
- Chen, Kuo-Hsing;
- Lin, Shu-Wen;
- Ho, Chao-Chi;
- Kuo, Ching-Hua;
- Tseng, Yufeng Jane
Publication type:
Article
Erratum to: Large expert-curated database for benchmarking document similarity detection in biomedical literature search.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz138
By:
- Brown, Peter;
- Consortium, RELISH;
- Zhou, Yaoqi
Publication type:
Article
Bio-AnswerFinder: a system to find answers to questions from biomedical texts.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz137
By:
- Ozyurt, Ibrahim Burak;
- Bandrowski, Anita;
- Grethe, Jeffrey S
Publication type:
Article
Variation benchmark datasets: update, criteria, quality and applications.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baz117
By:
- Sarkar, Anasua;
- Yang, Yang;
- Vihinen, Mauno
Publication type:
Article
HeartBioPortal2.0: new developments and updates for genetic ancestry and cardiometabolic quantitative traits in diverse human populations.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa115
By:
- Khomtchouk, Bohdan B;
- Nelson, Christopher S;
- Vand, Kasra A;
- Palmisano, Salvator;
- Grossman, Robert L
Publication type:
Article
CorkOakDB—The Cork Oak Genome Database Portal.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa114
By:
- Arias-Baldrich, Cirenia;
- Silva, Marta Contreiras;
- Bergeretti, Filippo;
- Chaves, Inês;
- Miguel, Célia;
- Saibo, Nelson J M;
- Sobral, Daniel;
- Faria, Daniel;
- Barros, Pedro M
Publication type:
Article
CEG 2.0: an updated database of clusters of essential genes including eukaryotic organisms.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa112
By:
- Liu, Shuo;
- Wang, Shu-Xuan;
- Liu, Wei;
- Wang, Chen;
- Zhang, Fa-Zhan;
- Ye, Yuan-Nong;
- Wu, Candy-S;
- Zheng, Wen-Xin;
- Rao, Nini;
- Guo, Feng-Biao
Publication type:
Article
MuscleAtlasExplorer: a web service for studying gene expression in human skeletal muscle.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa111
By:
- Asplund, Olof;
- Rung, Johan;
- Groop, Leif;
- B, Rashmi Prasad;
- Hansson, Ola
Publication type:
Article
Applying graph database technology for analyzing perturbed co-expression networks in cancer.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa110
By:
- Simpson, Claire M;
- Gnad, Florian
Publication type:
Article
Knowledge extraction for assisted curation of summaries of bacterial transcription factor properties.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa109
By:
- Méndez-Cruz, Carlos-Francisco;
- Blanchet, Antonio;
- Godínez, Alan;
- Arroyo-Fernández, Ignacio;
- Gama-Castro, Socorro;
- Martínez-Luna, Sara Berenice;
- González-Colín, Cristian;
- Collado-Vides, Julio
Publication type:
Article
Novel methods included in SpolLineages tool for fast and precise prediction of Mycobacterium tuberculosis complex spoligotype families.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa108
By:
- Couvin, David;
- Segretier, Wilfried;
- Stattner, Erick;
- Rastogi, Nalin
Publication type:
Article
RegulomePA: a database of transcriptional regulatory interactions in Pseudomonas aeruginosa PAO1.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa106
By:
- Galán-Vásquez, Edgardo;
- Luna-Olivera, Beatriz Carely;
- Ramírez-Ibáñez, Marcelino;
- Martínez-Antonio, Agustino
Publication type:
Article
ncVarDB: a manually curated database for pathogenic non-coding variants and benign controls.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa105
By:
- Biggs, Harry;
- Parthasarathy, Padmini;
- Gavryushkina, Alexandra;
- Gardner, Paul P
Publication type:
Article
A hybrid approach toward biomedical relation extraction training corpora: combining distant supervision with crowdsourcing.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa104
By:
- Sousa, Diana;
- Lamurias, Andre;
- Couto, Francisco M
Publication type:
Article
The IMEx coronavirus interactome: an evolving map of Coronaviridae–host molecular interactions.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa096
By:
- Perfetto, L;
- Pastrello, C;
- del-Toro, N;
- Duesbury, M;
- Iannuccelli, M;
- Kotlyar, M;
- Licata, L;
- Meldal, B;
- Panneerselvam, K;
- Panni, S;
- Rahimzadeh, N;
- Ricard-Blum, S;
- Salwinski, L;
- Shrivastava, A;
- Cesareni, G;
- Pellegrini, M;
- Orchard, S;
- Jurisica, I;
- Hermjakob, H;
- Porras, P
Publication type:
Article
CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa088
By:
- Rubio, Alejandro;
- Mier, Pablo;
- Andrade-Navarro, Miguel A;
- Garzón, Andrés;
- Jiménez, Juan;
- Pérez-Pulido, Antonio J
Publication type:
Article
GPCR-PEnDB: a database of protein sequences and derived features to facilitate prediction and classification of G protein-coupled receptors.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa087
By:
- Begum, Khodeza;
- Mohl, Jonathon E;
- Ayivor, Fredrick;
- Perez, Eder E;
- Leung, Ming-Ying
Publication type:
Article
Predicted rat interactome database and gene set linkage analysis.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa086
By:
- Tao, Yu-Tian;
- Ding, Xiao-Bao;
- Jin, Jie;
- Zhang, Hai-Bo;
- Guo, Wen-Ping;
- Ruan, Li;
- Yang, Qiao-Lei;
- Chen, Peng-Cheng;
- Yao, Heng;
- Chen, Xin
Publication type:
Article
Creating a Metabolic Syndrome Research Resource using the National Health and Nutrition Examination Survey.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa103
By:
- Jenkins, Willysha S;
- Richardson, Christian;
- Williams, Ariel;
- Williams-DeVane, Clarlynda R
Publication type:
Article
HAHmiR.DB: a server platform for high-altitude human miRNA–gene coregulatory networks and associated regulatory circuits.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa101
By:
- Khurana, Pankaj;
- Gupta, Apoorv;
- Sugadev, Ragumani;
- Sharma, Yogendra Kumar;
- Kumar, Bhuvnesh
Publication type:
Article
NPBS database: a chemical data resource with relational data between natural products and biological sources.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa102
By:
- Xu, Tingjun;
- Chen, Weiming;
- Zhou, Junhong;
- Dai, Jingfang;
- Li, Yingyong;
- Zhao, Yingli
Publication type:
Article
MetaTropismDB: a database of organ-specific metastasis induced by human cancer cell lines in mouse models.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa100
By:
- Giulietti, Matteo;
- Bastianoni, Marco;
- Cecati, Monia;
- Ruzzo, Annamaria;
- Bracci, Massimo;
- Malavolta, Marco;
- Piacenza, Francesco;
- Giacconi, Robertina;
- Piva, Francesco
Publication type:
Article
OGDA: a comprehensive organelle genome database for algae.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa097
By:
- Liu, Tao;
- Cui, Yutong;
- Jia, Xuli;
- Zhang, Jing;
- Li, Ruoran;
- Yu, Yahui;
- Jia, Shangang;
- Qu, Jiangyong;
- Wang, Xumin
Publication type:
Article
TopoDB: a novel multifunctional management system for laboratory animal colonies.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa098
By:
- Renschen, Adam;
- Matsunaga, Atsuko;
- Oksenberg, Jorge R;
- Santaniello, Adam;
- Didonna, Alessandro
Publication type:
Article
STOREFISH 2.0: a database on the reproductive strategies of teleost fishes.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa095
By:
- Teletchea, Stéphane;
- Teletchea, Fabrice
Publication type:
Article
CircR2Cancer: a manually curated database of associations between circRNAs and cancers.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa085
By:
- Lan, Wei;
- Zhu, Mingrui;
- Chen, Qingfeng;
- Chen, Baoshan;
- Liu, Jin;
- Li, Min;
- Chen, Yi-Ping Phoebe
Publication type:
Article
DPL: a comprehensive database on sequences, structures, sources and functions of peptide ligands.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa089
By:
- Wang, Fangyu;
- Li, Ning;
- Wang, Chunfeng;
- Xing, Guangxu;
- Cao, Shuai;
- Xu, Qian;
- Zhang, Yunshang;
- Hu, Man;
- Zhang, Gaiping
Publication type:
Article
KiMoSys 2.0: an upgraded database for submitting, storing and accessing experimental data for kinetic modeling.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa093
By:
- Mochão, Hugo;
- Barahona, Pedro;
- Costa, Rafael S
Publication type:
Article
VarStack: a web tool for data retrieval to interpret somatic variants in cancer.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa092
By:
- Howard, Morgan;
- Kane, Bruce;
- Lepry, Mary;
- Stey, Paul;
- Ragavendran, Ashok;
- Uzun, Ece D Gamsiz
Publication type:
Article
BarleyVarDB: a database of barley genomic variation.
Published in:
Database: The Journal of Biological Databases & Curation, 2020, v. 2020, p. 1, doi. 10.1093/database/baaa091
By:
- Tan, Cong;
- Chapman, Brett;
- Wang, Penghao;
- Zhang, Qisen;
- Zhou, Gaofeng;
- Zhang, Xiao-qi;
- Barrero, Roberto A;
- Bellgard, Matthew I;
- Li, Chengdao
Publication type:
Article