Works matching IS 17580463 AND DT 2019 AND VI 2019

Results: 155

Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz143
By:
- Conford, B;
- Almsaeed, A;
- Buehler, S;
- Childers, C P;
- Ficklin, S P;
- Staton, M E;
- Poelchau, M F
Publication type:
Article
AcetoBase: a functional gene repository and database for formyltetrahydrofolate synthetase sequences.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz142
By:
- Singh, Abhijeet;
- Müller, Bettina;
- Fuxelius, Hans-Henrik;
- Schnürer, Anna
Publication type:
Article
GenoSurf: metadata driven semantic search system for integrated genomic datasets.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz132
By:
- Canakoglu, Arif;
- Bernasconi, Anna;
- Colombo, Andrea;
- Masseroli, Marco;
- Ceri, Stefano
Publication type:
Article
The COMPARE Data Hubs.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz136
By:
- Amid, Clara;
- Pakseresht, Nima;
- Silvester, Nicole;
- Jayathilaka, Suran;
- Lund, Ole;
- Dynovski, Lukasz D;
- Pataki, Bálint Á;
- Visontai, Dávid;
- Xavier, Basil Britto;
- Alako, Blaise T F;
- Belka, Ariane;
- Cisneros, Jose L B;
- Cotten, Matthew;
- Haringhuizen, George B;
- Harrison, Peter W;
- Höper, Dirk;
- Holt, Sam;
- Hundahl, Camilla;
- Hussein, Abdulrahman;
- Kaas, Rolf S
Publication type:
Article
RHPCG: a database of the Regulation of the Hippo Pathway in Cancer Genome.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz135
By:
- Wang, Chengyu;
- Yang, Fan;
- Chen, Tingting;
- Dong, Qi;
- Zhao, Zhangxiang;
- Liu, Yaoyao;
- Chen, Bo;
- Liang, Haihai;
- Yang, Huike;
- Gu, Yunyan
Publication type:
Article
SGID: a comprehensive and interactive database of the silkworm.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz134
By:
- Zhu, Zhenglin;
- Guan, Zhufen;
- Liu, Gexin;
- Wang, Yawang;
- Zhang, Ze
Publication type:
Article
The human DEPhOsphorylation Database DEPOD: 2019 update.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz133
By:
- Damle, Nikhil P;
- Köhn, Maja
Publication type:
Article
Mesophotic.org: a repository for scientific information on mesophotic ecosystems.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz140
By:
- Bongaerts, Pim;
- Perez-Rosales, Gonzalo;
- Radice, Veronica Z;
- Eyal, Gal;
- Gori, Andrea;
- Gress, Erika;
- Hammerman, Nicholas M;
- Hernandez-Agreda, Alejandra;
- Laverick, Jack;
- Muir, Paul;
- Pinheiro, Hudson;
- Pyle, Richard L;
- Rocha, Luiz;
- Turner, Joseph A;
- Booker, Ryan
Publication type:
Article
RAACBook: a web server of reduced amino acid alphabet for sequence-dependent inference by using Chou's five-step rule.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz131
By:
- Zheng, Lei;
- Huang, Shenghui;
- Mu, Nengjiang;
- Zhang, Haoyue;
- Zhang, Jiayu;
- Chang, Yu;
- Yang, Lei;
- Zuo, Yongchun
Publication type:
Article
Plant Regulomics Portal (PRP): a comprehensive integrated regulatory information and analysis portal for plant genomes.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz130
By:
- Panzade, Ganesh;
- Gangwar, Indu;
- Awasthi, Supriya;
- Sharma, Nitesh;
- Shankar, Ravi
Publication type:
Article
Improved standardization of transcribed digital specimen data.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz129
By:
- Groom, Quentin;
- Dillen, Mathias;
- Hardy, Helen;
- Phillips, Sarah;
- Willemse, Luc;
- Wu, Zhengzhe
Publication type:
Article
NeoPeptide: an immunoinformatic database of T-cell-defined neoantigens.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz128
By:
- Zhou, Wei-Jun;
- Qu, Zhi;
- Song, Chao-Yang;
- Sun, Yang;
- Lai, An-Li;
- Luo, Ma-Yao;
- Ying, Yu-Zhe;
- Meng, Hu;
- Liang, Zhao;
- He, Yan-Jie;
- Li, Yu-Hua;
- Liu, Jian
Publication type:
Article
PCIR: a database of Plant Chloroplast Inverted Repeats.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz127
By:
- Zhang, Rui;
- Ge, Fangfang;
- Li, Huayang;
- Chen, Yudong;
- Zhao, Ying;
- Gao, Ying;
- Liu, Zhiguo;
- Yang, Long
Publication type:
Article
ODNA: a manually curated database of noncoding RNAs associated with orthopedics.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz126
By:
- You, Changcheng;
- Zhu, Kai;
- Zhang, Qiuhua;
- Yan, Jnglong;
- Wang, Yufu;
- Li, Jing
Publication type:
Article
MIRKB: a myocardial infarction risk knowledge base.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz125
By:
- Zhan, Chaoying;
- Shi, Manhong;
- Wu, Rongrong;
- He, Hongxin;
- Liu, Xingyun;
- Shen, Bairong
Publication type:
Article
Machine learning approach to literature mining for the genetics of complex diseases.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz124
By:
- Schuster, Jessica;
- Superdock, Michael;
- Agudelo, Anthony;
- Stey, Paul;
- Padbury, James;
- Sarkar, Indra Neil;
- Uzun, Alper
Publication type:
Article
Reactome and ORCID—fine-grained credit attribution for community curation.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz123
By:
- Viteri, Guilherme;
- Matthews, Lisa;
- Varusai, Thawfeek;
- Gillespie, Marc;
- Milacic, Marija;
- Cook, Justin;
- Weiser, Joel;
- Shorser, Solomon;
- Sidiropoulos, Konstantinos;
- Fabregat, Antonio;
- Haw, Robin;
- Wu, Guanming;
- Stein, Lincoln;
- D'Eustachio, Peter;
- Hermjakob, Henning
Publication type:
Article
UPObase: an online database of unspecific peroxygenases.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz122
By:
- Faiza, Muniba;
- Lan, Dongming;
- Huang, Shengfeng;
- Wang, Yonghua
Publication type:
Article
FoodBase corpus: a new resource of annotated food entities.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz121
By:
- Popovski, Gorjan;
- Seljak, Barbara Koroušić;
- Eftimov, Tome
Publication type:
Article
RPGeNet v2.0: expanding the universe of retinal disease gene interactions network.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz120
By:
- Arenas-Galnares, Rodrigo;
- Castillo-Lara, Sergio;
- Toulis, Vasileios;
- Boloc, Daniel;
- Gonzàlez-Duarte, Roser;
- Marfany, Gemma;
- Abril, Josep F
Publication type:
Article
PMBD: a Comprehensive Plastics Microbial Biodegradation Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz119
By:
- Gan, Zhiqiang;
- Zhang, Houjin
Publication type:
Article
The Sickle Cell Disease Ontology: enabling universal sickle cell-based knowledge representation.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz118
By:
- Group, Sickle Cell Disease Ontology Working
Publication type:
Article
A general approach for improving deep learning-based medical relation extraction using a pre-trained model and fine-tuning.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz116
By:
- Chen, Tao;
- Wu, Mingfen;
- Li, Hexi
Publication type:
Article
Identification of tRNA-derived ncRNAs in TCGA and NCI-60 panel cell lines and development of the public database tRFexplorer.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz115
By:
- Ferlita, Alessandro La;
- Alaimo, Salvatore;
- Veneziano, Dario;
- Nigita, Giovanni;
- Balatti, Veronica;
- Croce, Carlo M;
- Ferro, Alfredo;
- Pulvirenti, Alfredo
Publication type:
Article
Representing glycophenotypes: semantic unification of glycobiology resources for disease discovery.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz114
By:
- Gourdine, Jean-Philippe F;
- Brush, Matthew H;
- Vasilevsky, Nicole A;
- Shefchek, Kent;
- Köhler, Sebastian;
- Matentzoglu, Nicolas;
- Munoz-Torres, Monica C;
- McMurry, Julie A;
- Zhang, Xingmin Aaron;
- Robinson, Peter N;
- Haendel, Melissa A
Publication type:
Article
Mabellini: a genome-wide database for understanding the structural proteome and evaluating prospective antimicrobial targets of the emerging pathogen Mycobacterium abscessus.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz113
By:
- Skwark, Marcin J;
- Torres, Pedro H M;
- Copoiu, Liviu;
- Bannerman, Bridget;
- Floto, R Andres;
- Blundell, Tom L
Publication type:
Article
RareLSD: a manually curated database of lysosomal enzymes associated with rare diseases.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz112
By:
- Akhter, Sana;
- Kaur, Harpreet;
- Agrawal, Piyush;
- Raghava, Gajendra P S
Publication type:
Article
SCNBase: a genomics portal for the soybean cyst nematode (Heterodera glycines).
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz111
By:
- Masonbrink, Rick;
- Maier, Tom R;
- Seetharam, Arun S;
- Juvale, Parijat S;
- Baber, Levi;
- Baum, Thomas J;
- Severin, Andrew J
Publication type:
Article
RiceRelativesGD: a genomic database of rice relatives for rice research.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz110
By:
- Mao, Lingfeng;
- Chen, Meihong;
- Chu, Qinjie;
- Jia, Lei;
- Sultana, Most Humaira;
- Wu, Dongya;
- Kong, Xiangdong;
- Qiu, Jie;
- Ye, Chu-Yu;
- Zhu, Qian-Hao;
- Chen, Xi;
- Fan, Longjiang
Publication type:
Article
Evaluation of an automatic article selection method for timelier updates of the Comet Core Outcome Set database.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz109
By:
- Norman, Christopher R;
- Gargon, Elizabeth;
- Leeflang, Mariska M G;
- Névéol, Aurélie;
- Williamson, Paula R
Publication type:
Article
'One DB to rule them all'—the RING: a Regulatory INteraction Graph combining TFs, genes/proteins, SNPs, diseases and drugs.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz108
By:
- Politano, Gianfranco;
- Carlo, Stefano Di;
- Benso, Alfredo
Publication type:
Article
A new unbiased and highly automated approach to find new prognostic markers in preclinical research.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz107
By:
- Neidnicht, Martin;
- Mittermüller, Daniela;
- Effenberger-Neidnicht, Katharina
Publication type:
Article
Enabling semantic queries across federated bioinformatics databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz106
By:
- Sima, Ana Claudia;
- Farias, Tarcisio Mendes de;
- Zbinden, Erich;
- Anisimova, Maria;
- Gil, Manuel;
- Stockinger, Heinz;
- Stockinger, Kurt;
- Robinson-Rechavi, Marc;
- Dessimoz, Christophe
Publication type:
Article
BioSCOOP – Biobank Sample Communication Protocol. New approach for the transfer of information between biobanks.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz105
By:
- Jarczak, J;
- Lach, J;
- Borówka, P;
- Gałka, M;
- Bućko, M;
- Marciniak, B;
- Strapagiel, D
Publication type:
Article
DeepScreening: a deep learning-based screening web server for accelerating drug discovery.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz104
By:
- Liu, Zhihong;
- Du, Jiewen;
- Fang, Jiansong;
- Yin, Yulong;
- Xu, Guohuan;
- Xie, Liwei
Publication type:
Article
ProtMiscuity: a database of promiscuous proteins.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz103
By:
- Rueda, Ana Julia Velez;
- Palopoli, Nicolas;
- Zacarías, Matías;
- Sommese, Leandro Matías;
- Parisi, Gustavo
Publication type:
Article
PopTargs: a database for studying population evolutionary genetics of human microRNA target sites.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz102
By:
- Hatlen, Andrea;
- Helmy, Mohab;
- Marco, Antonio
Publication type:
Article
KOFFI and Anabel 2.0—a new binding kinetics database and its integration in an open-source binding analysis software.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz101
By:
- Norval, Leo William;
- Krämer, Stefan Daniel;
- Gao, Mingjie;
- Herz, Tobias;
- Li, Jianyu;
- Rath, Christin;
- Wöhrle, Johannes;
- Günther, Stefan;
- Roth, Günter
Publication type:
Article
Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz100
By:
- Buble, Katheryn;
- Jung, Sook;
- Humann, Jodi L;
- Yu, Jing;
- Cheng, Chun-Huai;
- Lee, Taein;
- Ficklin, Stephen P;
- Hough, Heidi;
- Condon, Bradford;
- Staton, Margaret E;
- Wegrzyn, Jill L;
- Main, Dorrie
Publication type:
Article
RumimiR: a detailed microRNA database focused on ruminant species.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz099
By:
- Bourdon, Céline;
- Bardou, Philippe;
- Aujean, Etienne;
- Guillou, Sandrine Le;
- Tosser-Klopp, Gwenola;
- Provost, Fabienne Le
Publication type:
Article
Progress in the study of genome size evolution in Asteraceae: analysis of the last update.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz098
By:
- Vitales, Daniel;
- Fernández, Pol;
- Garnatje, Teresa;
- Garcia, Sònia
Publication type:
Article
NutriGenomeDB: a nutrigenomics exploratory and analytical platform.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz097
By:
- Martín-Hernández, Roberto;
- Reglero, Guillermo;
- Ordovás, José M;
- Dávalos, Alberto
Publication type:
Article
Benchmarking database systems for Genomic Selection implementation.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz096
By:
- Nti-Addae, Yaw;
- Matthews, Dave;
- Ulat, Victor Jun;
- Syed, Raza;
- Sempéré, Guilhem;
- Pétel, Adrien;
- Renner, Jon;
- Larmande, Pierre;
- Guignon, Valentin;
- Jones, Elizabeth;
- Robbins, Kelly
Publication type:
Article
Extraction of chemical–protein interactions from the literature using neural networks and narrow instance representation.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz095
By:
- Antunes, Rui;
- Matos, Sérgio
Publication type:
Article
ApicoTFdb: the comprehensive web repository of apicomplexan transcription factors and transcription-associated co-factors.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz094
By:
- Sardar, Rahila;
- Kaushik, Abhinav;
- Pandey, Rajan;
- Mohmmed, Asif;
- Ali, Shakir;
- Gupta, Dinesh
Publication type:
Article
CasPDB: an integrated and annotated database for Cas proteins from bacteria and archaea.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz093
By:
- Tang, Zhongjie;
- Chen, ShaoQi;
- Chen, Ang;
- He, Bifang;
- Zhou, Yuwei;
- Chai, Guoshi;
- Guo, FengBiao;
- Huang, Jian
Publication type:
Article
Combined alignments of sequences and domains characterize unknown proteins with remotely related protein search PSISearch2D.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz092
By:
- Yang, Minglei;
- Zhang, Wenliang;
- Yao, Guocai;
- Zhang, Haiyue;
- Li, Weizhong
Publication type:
Article
ChlamBase: a curated model organism database for the Chlamydia research community.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz091
By:
- Putman, Tim;
- Hybiske, Kevin;
- Jow, Derek;
- Afrasiabi, Cyrus;
- Lelong, Sebastien;
- Cano, Marco Alvarado;
- Stupp, Gregory S;
- Waagmeester, Andra;
- Good, Benjamin M;
- Wu, Chunlei;
- Su, Andrew I
Publication type:
Article
LncCeRBase: a database of experimentally validated human competing endogenous long non-coding RNAs.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz090
By:
- Pian, Cong;
- Zhang, Guangle;
- Tu, Tengfei;
- Ma, Xiangyu;
- Li, Fei
Publication type:
Article
PICEAdatabase: a web database for Picea omics and phenotypic information.
Published in:
Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz089
By:
- Lu, Nan;
- Zhu, Tianqing;
- Ouyang, Fangqun;
- Xia, Yan;
- Li, Qingfen;
- Jia, Zirui;
- Hu, Jiwen;
- Ling, Juanjuan;
- Ma, Wenjun;
- Yang, Guijuan;
- Zhang, Hanguo;
- Kong, Lisheng;
- Wang, Junhui
Publication type:
Article