Works matching IS 17580463 AND DT 2018 AND VI 2018

Results: 139

CellExpress: a comprehensive microarray-based cancer cell line and clinical sample gene expression analysis online system.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bax101
By:
- Yi-Fang Lee;
- Chien-Yueh Lee;
- Liang-Chuan Lai;
- Mong-Hsun Tsai;
- Tzu-Pin Lu;
- Chuang, Eric Y.
Publication type:
Article
BioDataome: a collection of uniformly preprocessed and automatically annotated datasets for data-driven biology.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay011
By:
- Lakiotaki, Kleanthi;
- Vorniotakis, Nikolaos;
- Tsagris, Michail;
- Georgakopoulos, Georgios;
- Tsamardinos, Ioannis
Publication type:
Article
ZFLNC: a comprehensive and well-annotated database for zebrafish lncRNA.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay114
By:
- Hu, Xiang;
- Chen, Wen;
- Li, Jing;
- Huang, Shulan;
- Xu, Xuling;
- Zhang, Xuan;
- Xiang, Shuanglin;
- Liu, Changning
Publication type:
Article
YummyData: providing high-quality open life science data.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay022
By:
- Yamamoto, Yasunori;
- Yamaguchi, Atsuko;
- Splendiani, Andrea
Publication type:
Article
YHMI: a web tool to identify histone modifications and histone/chromatin regulators from a gene list in yeast.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay116
By:
- Wu, Wei-Sheng;
- Tu, Hao-Ping;
- Chu, Yu-Han;
- Nordling, Torbjörn E M;
- Tseng, Yan-Yuan;
- Liaw, Hung-Jiun
Publication type:
Article
YAAM: Yeast Amino Acid Modifications Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bax099
By:
- Ledesma, Leonardo;
- Sandoval, Eduardo;
- Cruz-Martínez, Uriel;
- Escalante, Ana María;
- Mejía, Selene;
- Moreno-Álvarez, Paola;
- Ávila, Emiliano;
- García, Erik;
- Coello, Gerardo;
- Torres-Quiroz, Francisco
Publication type:
Article
Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay002
By:
- Young, Jasmine Y;
- Westbrook, John D;
- Feng, Zukang;
- Peisach, Ezra;
- Persikova, Irina;
- Sala, Raul;
- Sen, Sanchayita;
- Berrisford, John M;
- Swaminathan, G Jawahar;
- Oldfield, Thomas J;
- Gutmanas, Aleksandras;
- Igarashi, Reiko;
- Armstrong, David R;
- Baskaran, Kumaran;
- Chen, Li;
- Chen, Minyu;
- Clark, Alice R;
- Costanzo, Luigi Di;
- Dimitropoulos, Dimitris;
- Gao, Guanghua
Publication type:
Article
Wide-scope biomedical named entity recognition and normalization with CRFs, fuzzy matching and character level modeling.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay096
By:
- Kaewphan, Suwisa;
- Hakala, Kai;
- Miekka, Niko;
- Salakoski, Tapio;
- Ginter, Filip
Publication type:
Article
Where differences resemble: sequence-feature analysis in curated databases of intrinsically disordered proteins.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay127
By:
- Necci, Marco;
- Piovesan, Damiano;
- Tosatto, Silvio C E
Publication type:
Article
TransAtlasDB: an integrated database connecting expression data, metadata and variants.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay014
By:
- Adetunji, Modupeore O;
- Lamont, Susan J;
- Schmidt, Carl J
Publication type:
Article
VianniaTopes: a database of predicted immunogenic peptides for Leishmania (Viannia) species.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay111
By:
- Llanes, Alejandro;
- Restrepo, Carlos Mario;
- Lleonart, Ricardo
Publication type:
Article
Updated regulation curation model at the Saccharomyces Genome Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay007
By:
- Engel, Stacia R;
- Skrzypek, Marek S;
- Hellerstedt, Sage T;
- Wong, Edith D;
- Nash, Robert S;
- Weng, Shuai;
- Binkley, Gail;
- Sheppard, Travis K;
- Karra, Kalpana;
- Cherry, J Michael
Publication type:
Article
A tutorial of diverse genome analysis tools found in the CoGe web-platform using Plasmodium spp. as a model.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. N.PAG, doi. 10.1093/database/bay030
By:
- Castillo, Andreina I;
- Nelson, Andrew D L;
- Haug-Baltzell, Asher K;
- Lyons, Eric
Publication type:
Article
Tripal Developer Toolkit.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay099
By:
- Condon, Bradford;
- Almsaeed, Abdullah;
- Chen, Ming;
- West, Joe;
- Staton, Margaret
Publication type:
Article
WaspBase: a genomic resource for the interactions among parasitic wasps, insect hosts and plants.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay081
By:
- Chen, Longfei;
- Lang, Kun;
- Bi, Shoudong;
- Luo, Jiapeng;
- Liu, Feiling;
- Ye, Xinhai;
- Xu, Jiadan;
- He, Kang;
- Li, Fei;
- Ye, Gongyin;
- Chen, Xuexin
Publication type:
Article
The tragedy of the biodiversity data commons: a data impediment creeping nigher?
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay033
By:
- Escribano, Nora;
- Galicia, David;
- Ariño, Arturo H
Publication type:
Article
Toward a service-based workflow for automated information extraction from herbarium specimens.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay103
By:
- Kirchhoff, Agnes;
- Bügel, Ulrich;
- Santamaria, Eduard;
- Reimeier, Fabian;
- Röpert, Dominik;
- Tebbje, Alexander;
- Güntsch, Anton;
- Chaves, Fernando;
- Steinke, Karl-Heinz;
- Berendsohn, Walter
Publication type:
Article
To increase trust, change the social design behind aggregated biodiversity data.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bax100
By:
- Franz, Nico M;
- Sterner, Beckett W
Publication type:
Article
TISSUES 2.0: an integrative web resource on mammalian tissue expression.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay003
By:
- Palasca, Oana;
- Santos, Alberto;
- Stolte, Christian;
- Gorodkin, Jan;
- Jensen, Lars Juhl
Publication type:
Article
THE-DB: a threading model database for comparative protein structure analysis of the E. coli K12 and human proteomes.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay090
By:
- Diamond, Justin S;
- Zhang, Yang
Publication type:
Article
A systematic approach for identifying shared mechanisms in epilepsy and its comorbidities.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay050
By:
- Hoyt, Charles Tapley;
- Domingo-Fernández, Daniel;
- Balzer, Nora;
- Güldenpfennig, Anka;
- Hofmann-Apitius, Martin
Publication type:
Article
A survey of ontology learning techniques and applications.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay101
By:
- Asim, Muhammad Nabeel;
- Wasim, Muhammad;
- Khan, Muhammad Usman Ghani;
- Mahmood, Waqar;
- Abbasi, Hafiza Mahnoor
Publication type:
Article
StraPep: a structure database of bioactive peptides.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay038
By:
- Wang, Jian;
- Yin, Tailang;
- Xiao, Xuwen;
- He, Dan;
- Xue, Zhidong;
- Jiang, Xinnong;
- Wang, Yan
Publication type:
Article
SPTEdb: a database for transposable elements in salicaceous plants.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay024
By:
- Yi, Fei;
- Jia, Zirui;
- Xiao, Yao;
- Ma, Wenjun;
- Wang, Junhui
Publication type:
Article
SMMDB: a web-accessible database for small molecule modulators and their targets involved in neurological diseases.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay082
By:
- Mishra, Subodh Kumar;
- Jain, Neha;
- Shankar, Uma;
- Tawani, Arpita;
- Mishra, Amit;
- Kumar, Amit
Publication type:
Article
Spfy: an integrated graph database for real-time prediction of bacterial phenotypes and downstream comparative analyses.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay086
By:
- Le, Kevin K;
- Whiteside, Matthew D;
- Hopkins, James E;
- Gannon, Victor P J;
- Laing, Chad R
Publication type:
Article
SolCyc: a database hub at the Sol Genomics Network (SGN) for the manual curation of metabolic networks in Solanum and Nicotiana specific databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay035
By:
- Foerster, Hartmut;
- Bombarely, Aureliano;
- Battey, James N D;
- Sierro, Nicolas;
- Ivanov, Nikolai V;
- Mueller, Lukas A
Publication type:
Article
SNPversity: a web-based tool for visualizing diversity.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay037
By:
- Schott, David A;
- Vinnakota, Abhinav G;
- Portwood, John L;
- Andorf, Carson M;
- Sen, Taner Z
Publication type:
Article
The SNPcurator: literature mining of enriched SNP-disease associations.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay020
By:
- Tawfik, Noha S;
- Spruit, Marco R
Publication type:
Article
SPRENO: a BioC module for identifying organism terms in figure captions.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay048
By:
- Dai, Hong-Jie;
- Singh, Onkar
Publication type:
Article
Signalling maps in cancer research: construction and data analysis.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay036
By:
- Kondratova, Maria;
- Sompairac, Nicolas;
- Barillot, Emmanuel;
- Zinovyev, Andrei;
- Kuperstein, Inna
Publication type:
Article
siAbasic: a comprehensive database for potent siRNA-6Ø sequences without off-target effects.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay109
By:
- Park, Jongyeun;
- Ahn, Seung Hyun;
- Cho, Kwang Moon;
- Gu, Dowoon;
- Jang, Eun-Sook;
- Chi, Sung Wook
Publication type:
Article
A set of domain rules and a deep network for protein coreference resolution.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay065
By:
- Li, Chen;
- Rao, Zhiqiang;
- Zheng, Qinghua;
- Zhang, Xiangrong
Publication type:
Article
SDADB: a functional annotation database of protein structural domains.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay064
By:
- Zeng, Cheng;
- Zhan, Weihua;
- Deng, Lei
Publication type:
Article
SAGE: a comprehensive resource of genetic variants integrating South Asian whole genomes and exomes.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay080
By:
- Hariprakash, Judith Mary;
- Vellarikkal, Shamsudheen Karuthedath;
- Verma, Ankit;
- Ranawat, Anop Singh;
- Jayarajan, Rijith;
- Ravi, Rowmika;
- Kumar, Anoop;
- Dixit, Vishal;
- Sivadas, Ambily;
- Kashyap, Atul Kumar;
- Senthivel, Vigneshwar;
- Sehgal, Paras;
- Mahadevan, Vijayalakshmi;
- Scaria, Vinod;
- Sivasubbu, Sridhar
Publication type:
Article
RTPDB: a database providing associations between genetic variation or expression and cancer prognosis with radiotherapy-based treatment.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay118
By:
- Zhang, Cheng-Dong;
- Yang, Yuan;
- Chen, Huan-Huan;
- Zhang, Ting;
- Wang, Qiang;
- Liang, Yuan;
- Zhang, Liang;
- Zhou, Yan
Publication type:
Article
realDB: a genome and transcriptome resource for the red algae (phylum Rhodophyta).
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay072
By:
- Chen, Fei;
- Zhang, Jiawei;
- Chen, Junhao;
- Li, Xiaojiang;
- Dong, Wei;
- Hu, Jian;
- Lin, Meigui;
- Liu, Yanhui;
- Li, Guowei;
- Wang, Zhengjia;
- Zhang, Liangsheng
Publication type:
Article
RBPMetaDB: a comprehensive annotation of mouse RNA-Seq datasets with perturbations of RNA-binding proteins.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay054
By:
- Li, Jin;
- Deng, Su-Ping;
- Vieira, Jacob;
- Thomas, James;
- Costa, Valerio;
- Tseng, Ching-San;
- Ivankovic, Franjo;
- Ciccodicola, Alfredo;
- Yu, Peng
Publication type:
Article
RabGTD: a comprehensive database of rabbit genome and transcriptome.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay075
By:
- Zhou, Lu;
- Xiao, Qingyu;
- Bi, Jie;
- Wang, Zhen;
- Li, Yixue
Publication type:
Article
PVsiRNAdb: a database for plant exclusive virus-derived small interfering RNAs.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay105
By:
- Gupta, Nikita;
- Zahra, Shafaque;
- Singh, Ajeet;
- Kumar, Shailesh
Publication type:
Article
PVCbase: an integrated web resource for the PVC bacterial proteomes.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay042
By:
- Bordin, Nicola;
- González-Sánchez, Juan Carlos;
- Devos, Damien P
Publication type:
Article
PvaxDB: a comprehensive structural repository of Plasmodium vivax proteome.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay021
By:
- Singh, Ankita;
- Kaushik, Rahul;
- Kuntal, Himani;
- Jayaram, B
Publication type:
Article
PubMed Labs: an experimental system for improving biomedical literature search.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay094
By:
- Fiorini, Nicolas;
- Canese, Kathi;
- Bryzgunov, Rostyslav;
- Radetska, Ievgeniia;
- Gindulyte, Asta;
- Latterner, Martin;
- Miller, Vadim;
- Osipov, Maxim;
- Kholodov, Michael;
- Starchenko, Grisha;
- Kireev, Evgeny;
- Lu, Zhiyong
Publication type:
Article
PtRFdb: a database for plant transfer RNA-derived fragments.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay063
By:
- Gupta, Nikita;
- Singh, Ajeet;
- Zahra, Shafaque;
- Kumar, Shailesh
Publication type:
Article
A probabilistic automated tagger to identify human-related publications.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay079
By:
- Cohen, Aaron M;
- Dunivin, Zackary O;
- Smalheiser, Neil R
Publication type:
Article
Probabilistic and machine learning-based retrieval approaches for biomedical dataset retrieval.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bax104
By:
- Karisani, Payam;
- Qin, Zhaohui S;
- Agichtein, Eugene
Publication type:
Article
Prevention of data duplication for high throughput sequencing repositories.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay008
By:
- Gabdank, Idan;
- Chan, Esther T;
- Davidson, Jean M;
- Hilton, Jason A;
- Davis, Carrie A;
- Baymuradov, Ulugbek K;
- Narayanan, Aditi;
- Onate, Kathrina C;
- Graham, Keenan;
- Miyasato, Stuart R;
- Dreszer, Timothy R;
- Strattan, J Seth;
- Jolanki, Otto;
- Tanaka, Forrest Y;
- Hitz, Benjamin C;
- Sloan, Cricket A;
- Cherry, J Michael
Publication type:
Article
Potent pairing: ensemble of long short-term memory networks and support vector machine for chemical-protein relation extraction.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay120
By:
- Mehryary, Farrokh;
- Björne, Jari;
- Salakoski, Tapio;
- Ginter, Filip
Publication type:
Article
PlaNC-TE: a comprehensive knowledgebase of non-coding RNAs and transposable elements in plants.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. N.PAG, doi. 10.1093/database/bay078
By:
- Pedro, Daniel Longhi Fernandes;
- Lorenzetti, Alan Péricles Rodrigues;
- Domingues, Douglas Silva;
- Paschoal, Alexandre Rossi
Publication type:
Article
PhytoTypeDB: a database of plant protein inter-cultivar variability and function.
Published in:
Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay125
By:
- Necci, Marco;
- Piovesan, Damiano;
- Micheletti, Diego;
- Paladin, Lisanna;
- Cestaro, Alessandro;
- Tosatto, Silvio C E
Publication type:
Article