Works matching IS 17580463 AND DT 2017 AND VI 2017 AND IP 1

Results: 107

PTS: a pharmaceutical target seeker.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax095
By:
- Peng Ding;
- Xin Yan;
- Zhihong Liu;
- Jiewen Du;
- Yunfei Du;
- Yutong Lu;
- Di Wu;
- Yuehua Xu;
- Huihao Zhou;
- Qiong Gu;
- Jun Xu
Publication type:
Article
Gold-standard ontology-based anatomical annotation in the CRAFT Corpus.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax087
By:
- Bada, Michael;
- Vasilevsky, Nicole;
- Baumgartner Jr., William A.;
- Haendel, Melissa;
- Hunter, Lawrence E.
Publication type:
Article
GRONS: a comprehensive genetic resource of nicotine and smoking.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax097
By:
- Zhonghai Fang;
- Yichen Yang;
- Yanshi Hu;
- Li, Ming D.;
- Ju Wang
Publication type:
Article
Leveraging word embeddings and medical entity extraction for biomedical dataset retrieval using unstructured texts.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax091
By:
- Yanshan Wang;
- Rastegar-Mojarad, Majid;
- Komandur-Elayavilli, Ravikumar;
- Hongfang Liu
Publication type:
Article
PCOSBase: a manually curated database of polycystic ovarian syndrome.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax098
By:
- Afiqah-Aleng, Nor;
- Harun, Sarahani;
- Arief A-Rahman, Mohd Rusman;
- Nor Muhammad, Nor Azlan;
- Mohamed-Hussein, Zeti-Azura
Publication type:
Article
HisgAtlas 1.0: a human immunosuppression gene database
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax094
By:
- Yuan Liu;
- Mengqi He;
- Dan Wang;
- Lihong Diao;
- Jinying Liu;
- Li Tang;
- Shuzhen Guo;
- Fuchu He;
- Dong Li
Publication type:
Article
Extension modules for storage, visualization and querying of genomic, genetic and breeding data in Tripal databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax092
By:
- Jung, Sook;
- Lee, Taein;
- Cheng, Chun-Huai;
- Ficklin, Stephen;
- Jing Yu;
- Humann, Jodi;
- Main, Dorrie
Publication type:
Article
PlantCircNet: a database for plant circRNA–miRNA–mRNA regulatory networks.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax089
By:
- Peijing Zhang;
- Xianwen Meng;
- Hongjun Chen;
- Yongjing Liu;
- Jitong Xue;
- Yincong Zhou;
- Ming Chen
Publication type:
Article
Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax082
By:
- Nai-Wen Chang;
- Hong-Jie Dai;
- Yung-Yu Shih;
- Chi-Yang Wu;
- Dela Rosa, Mira Anne C.;
- Obena, Rofeamor P.;
- Yu-Ju Chen;
- Wen-Lian Hsu;
- Yen-Jen Oyang
Publication type:
Article
Named entity linking of geospatial and host metadata in GenBank for advancing biomedical research.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax093
By:
- Tahsin, Tasnia;
- Weissenbacher, Davy;
- Jones-Shargani, Demetrius;
- Magee, Daniel;
- Vaiente, Matteo;
- Gonzalez, Graciela;
- Scotch, Matthew
Publication type:
Article
Benchmarks for measurement of duplicate detection methods in nucleotide databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/baw164
By:
- Qingyu Chen;
- Zobel, Justin;
- Verspoor, Karin
Publication type:
Article
MGIS: managing banana (Musa spp.) genetic resources information and high-throughput genotyping data.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax046
By:
- Ruas, Max;
- Guignon, V.;
- Sempere, G.;
- Sardos, J.;
- Hueber, Y.;
- Duvergey, H.;
- Andrieu, A.;
- Chase, R.;
- Jenny, C.;
- Hazekamp, T.;
- Irish, B.;
- Jelali, K.;
- Adeka, J.;
- Ayala-Silva, T.;
- Chao, C. P.;
- Daniells, J.;
- Dowiya, B.;
- effa, B. Effa;
- Gueco, L.;
- Herradura, L.
Publication type:
Article
Corrigendum.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax050
Publication type:
Article
LeishDB: a database of coding gene annotation and non-coding RNAs in Leishmania braziliensis.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax047
By:
- Torres, Felipe;
- Arias-Carrasco, Raúl;
- Caris-Maldonado, José C.;
- Barral, Aldina;
- Maracaja-Coutinho, Vinicius;
- De Queiroz, Artur T. L.
Publication type:
Article
KiPho: malaria parasite kinome and phosphatome portal.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax063
By:
- Pandey, Rajan;
- Kumar, Pawan;
- Gupta, Dinesh
Publication type:
Article
IsoPlot: a database for comparison of mRNA isoforms in fruit fly and mosquitoes.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax069
By:
- I-Man Ng;
- Jia-Hsin Huang;
- Shang-Chi Tsai;
- Huai-Kuang Tsai
Publication type:
Article
YGMD: a repository for yeast cooperative transcription factor sets and their target gene modules.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax085
By:
- Wei-Sheng Wu;
- Pin-Han Chen;
- Tsung-Te Chen;
- Yan-Yuan Tseng
Publication type:
Article
Update notifications for the BioCyc collection of databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax086
By:
- Paley, Suzanne;
- Karp, Peter D.
Publication type:
Article
Triage by ranking to support the curation of protein interactions.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax040
By:
- Mottin, Luc;
- Pasche, Emilie;
- Gobeill, Julien;
- Rech de Laval, Valentine;
- Gleizes, Anne;
- Michel, Pierre-André;
- Bairoch, Amos;
- Gaudet, Pascale;
- Ruch, Patrick
Publication type:
Article
TIBLE: a web-based, freely accessible resource for small-molecule binding data for mycobacterial species.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax041
By:
- Malhotra, Sony;
- Mugumbate, Grace;
- Blundell, Tom L.;
- Higueruelo, Alicia P.
Publication type:
Article
The Grass Carp Genome Database (GCGD): an online platform for genome features and annotations.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax051
By:
- Yaxin Chen;
- Mijuan Shi;
- Wanting Zhang;
- Yingyin Cheng;
- YapingWang;
- Xiao-Qin Xia
Publication type:
Article
RampDB: a web application and database for the exploration and prediction of receptor activity modifying protein interactions.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax067
By:
- Topaz, Nadav;
- Mojib, Nazia;
- Chande, Aroon T.;
- Kubanek, Julia;
- Jordan, I. King
Publication type:
Article
Query expansion using MeSH terms for dataset retrieval: OHSU at the bioCADDIE 2016 dataset retrieval challenge.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax065
By:
- Wright, Theodore B.;
- Ball, David;
- Hersh, William
Publication type:
Article
Proficiency of data interpretation: identification of signaling SNPs/specific loci for coronary artery disease.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax078
By:
- Cheema, Asma N.;
- Rosenthal, Samantha L.;
- Kamboh, M. Ilyas
Publication type:
Article
SFMetaDB: a comprehensive annotation of mouse RNA splicing factor RNA-Seq datasets.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax071
By:
- Jin Li;
- Ching-San Tseng;
- Federico, Antonio;
- Ivankovic, Franjo;
- Yi-Shuian Huang;
- Ciccodicola, Alfredo;
- Swanson, Maurice S.;
- Peng Yu
Publication type:
Article
PigVar: a database of pig variations and positive selection signatures.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax048
By:
- Zhong-Yin Zhou;
- Aimin Li;
- Otecko, Newton O.;
- Yan-Hu Liu;
- Irwin, David M.;
- Lu Wang;
- Adeola, Adeniyi C.;
- Junying Zhang;
- Hai-Bing Xie;
- Ya-Ping Zhang
Publication type:
Article
NutriChem 2.0: exploring the effect of plant-based foods on human health and drug efficacy.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax044
By:
- Yueqiong Ni;
- Jensen, Kasper;
- Kouskoumvekaki, Irene;
- Panagiotou, Gianni
Publication type:
Article
NRDTD: a database for clinically or experimentally supported non-coding RNAs and drug targets associations.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax057
By:
- Xing Chen;
- Ya-Zhou Sun;
- De-Hong Zhang;
- Jian-Qiang Li;
- Gui-Ying Yan;
- Ji-Yong An;
- Zhu-Hong You
Publication type:
Article
New extension software modules to enhance searching and display of transcriptome data in Tripal databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax052
By:
- Ming Chen;
- Henry, Nathan;
- Almsaeed, Abdullah;
- Xiao Zhou;
- Wegrzyn, Jill;
- Ficklin, Stephen;
- Staton, Margaret
Publication type:
Article
In-Cardiome: integrated knowledgebase for coronary artery disease enabling translational research.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax077
By:
- Sharma, Ankit;
- Deshpande, Vrushali;
- Ghatge, Madankumar;
- Vangala, Rajani Kanth
Publication type:
Article
RetrogeneDB–a database of plant and animal retrocopies.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax038
By:
- Rosikiewicz, Wojciech;
- Kabza, Michał;
- Kosiński, Jan G.;
- Ciomborowska-Basheer, Joanna;
- Kubiak, Magdalena R.;
- Makałowska, Izabela
Publication type:
Article
Multi-field query expansion is effective for biomedical dataset retrieval.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax062
By:
- Bouadjenek, Mohamed Reda;
- Verspoor, Karin
Publication type:
Article
MiRIAD update: using alternative polyadenylation, protein interaction network analysis and additional species to enhance exploration of the role of intragenic miRNAs and their host genes.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax053
By:
- Hinske, Ludwig C.;
- dos Santos, Felipe R. C.;
- Ohara, Daniel T.;
- Ohno-Machado, Lucila;
- Kreth, Simone;
- Galante, Pedro A. F.
Publication type:
Article
RegulatorDB: a resource for the analysis of yeast transcriptional regulation.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax058
By:
- Choi, John A.;
- Wyrick, John J.
Publication type:
Article
In silico characterization of tandem repeats in Trichophyton rubrum and related dermatophytes provides new insights into their role in pathogenesis.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax035
By:
- Franco, Matheus Eloy;
- Bitencourt, Tamires Aparecida;
- Marins, Mozart;
- Fachin, Ana Lúcia
Publication type:
Article
Improving taxonomic accuracy for fungi in public sequence databases: applying ‘one name one species’ in well-defined genera with Trichoderma/Hypocrea as a test case.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax072
By:
- Robbertse, Barbara;
- Strope, Pooja K.;
- Chaverri, Priscila;
- Gazis, Romina;
- Ciufo, Stacy;
- Domrachev, Michael;
- Schoch, Conrad L.
Publication type:
Article
Improving average ranking precision in user searches for biomedical research datasets.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax083
By:
- Teodoro, Douglas;
- Mottin, Luc;
- Gobeill, Julien;
- Gaudinat, Arnaud;
- Vachon, Thérèse;
- Ruch, Patrick
Publication type:
Article
Improved annotation of the insect vector of citrus greening disease: biocuration by a diverse genomics community.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax032
By:
- Saha, Surya;
- Hosmani, Prashant S.;
- Villalobos-Ayala, Krystal;
- Miller, Sherry;
- Shippy, Teresa;
- Flores, Mirella;
- Rosendale, Andrew;
- Cordola, Chris;
- Bell, Tracey;
- Mann, Hannah;
- DeAvila, Gabe;
- DeAvila, Daniel;
- Moore, Zachary;
- Buller, Kyle;
- Ciolkevich, Kathryn;
- Nandyal, Samantha;
- Mahoney, Robert;
- Van Voorhis, Joshua;
- Dunlevy, Megan;
- Farrow, David
Publication type:
Article
Impact of translation on named-entity recognition in radiology texts.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax064
By:
- Campos, Luís;
- Pedro, Vasco;
- Couto, Francisco
Publication type:
Article
FishTrace: a genetic catalogue of European fishes.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax075
By:
- Zanzi, Antonella;
- Th. Martinsohn, Jann
Publication type:
Article
First steps in automatic summarization of transcription factor properties for RegulonDB: classification of sentences about structural domains and regulated processes.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax070
By:
- Méndez-Cruz, Carlos-Francisco;
- Gama-Castro, Socorro;
- Mejía-Almonte, Citlalli;
- Castillo-Villalba, Marco-Polo;
- Muñiz-Rascado, Luis-José;
- Collado-Vides, Julio
Publication type:
Article
EUCANEXT: an integrated database for the exploration of genomic and transcriptomic data from Eucalyptus species.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax079
By:
- Costa Nascimento, Leandro;
- Mendes Salazar, Marcela;
- Lepikson-Neto, Jorge;
- Oliveira Camargo, Eduardo Leal;
- Salera Parreiras, Lucas;
- Guimarães Pereira, Gonçalo Amarante;
- Falsarella Carazzolle, Marcelo
Publication type:
Article
Elsevier’s approach to the bioCADDIE 2016 Dataset Retrieval Challenge.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax056
By:
- Scerri, Antony;
- Kuriakose, John;
- Deshmane, Amit Ajit;
- Stanger, Mark;
- Cotroneo, Peter;
- Moore, Rebekah;
- Naik, Raj;
- de Waard, Anita
Publication type:
Article
eGenPub, a text mining system for extending computationally mapped bibliography for UniProt Knowledgebase by capturing centrality.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax081
By:
- Ruoyao Ding;
- Boutet, Emmanuel;
- Lieberherr, Damien;
- Schneider, Michel;
- Tognolli, Michael;
- Wu, Cathy H.;
- Vijay-Shanker, K.;
- Arighi, Cecilia N.
Publication type:
Article
Edaphostat: interactive ecological analysis of soil organism occurrences and preferences from the Edaphobase data warehouse.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax080
By:
- Hausen, Jonas;
- Scholz-Starke, Björn;
- Burkhardt, Ulrich;
- Lesch, Stephan;
- Rick, Sebastian;
- Russell, David;
- Roß-Nickoll, Martina;
- Ottermanns, Richard
Publication type:
Article
Echinobase: an expanding resource for echinoderm genomic information.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax074
By:
- Kudtarkar, Parul;
- Cameron, R. Andrew
Publication type:
Article
DLREFD: a database providing associations of long non-coding RNAs, environmental factors and phenotypes.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax084
By:
- Ya-Zhou Sun;
- De-Hong Zhang;
- Zhong Ming;
- Jian-Qiang Li;
- Xing Chen
Publication type:
Article
decodeRNA— predicting non-coding RNA functions using guilt-by-association.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax042
By:
- Lefever, Steve;
- Anckaert, Jasper;
- Volders, Pieter-Jan;
- Luypaert, Manuel;
- Vandesompele, Jo;
- Mestdagh, Pieter
Publication type:
Article
Database of resistance related metabolites in Wheat Fusarium head blight Disease (MWFD).
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax076
By:
- Surendra, Anuradha;
- Cuperlovic-Culf, Miroslava
Publication type:
Article
CTD<sup>2</sup> Dashboard: a searchable web interface to connect validated results from the Cancer Target Discovery and Development Network.
Published in:
Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax054
By:
- Aksoy, Bülent Arman;
- Dančík, Vlado;
- Smith, Kenneth;
- Mazerik, Jessica N.;
- Ji, Zhou;
- Gross, Benjamin;
- Nikolova, Olga;
- Jaber, Nadia;
- Califano, Andrea;
- Schreiber, Stuart L.;
- Gerhard, Daniela S.;
- Hermida, Leandro C.;
- Jagu, Subhashini;
- Sander, Chris;
- Floratos, Aris;
- Clemons, Paul A.
Publication type:
Article