Works matching IS 17580463 AND DT 2013 AND VI 2013

Results: 92

PCorral—interactive mining of protein interactions from MEDLINE.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. N.PAG, doi. 10.1093/database/bat030
By:
- Li, Chen;
- Jimeno-Yepes, Antonio;
- Arregui, Miguel;
- Kirsch, Harald;
- Rebholz-Schuhmann, Dietrich
Publication type:
Article
MisPred: a resource for identification of erroneous protein sequences in public databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat053
By:
- Nagy, Alinda;
- Patthy, László
Publication type:
Article
Chemical annotation of small and peptide-like molecules at the Protein Data Bank.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat079
By:
- Jasmine Y. Young;
- Zukang Feng;
- Dimitropoulos, Dimitris;
- Sala, Raul;
- Westbrook, John;
- Zhuravleva, Marina;
- Chenghua Shao;
- Quesada, Martha;
- Peisach, Ezra;
- Berman, Helen M.
Publication type:
Article
T2D@ZJU: a knowledgebase integrating heterogeneous connections associated with type 2 diabetes mellitus.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat052
By:
- Zhenzhong Yang;
- Jihong Yang;
- Wei Liu;
- Leihong Wu;
- Li Xing;
- Yi Wang;
- Xiaohui Fan;
- Yiyu Cheng
Publication type:
Article
BmTEdb: a collective database of transposable elements in the silkworm genome.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat055
By:
- Hong-En Xu;
- Hua-Hao Zhang;
- Tian Xia;
- Min-Jin Han;
- Yi-Hong Shen;
- Ze Zhang
Publication type:
Article
ESCAPE: database for integrating high-content published data collected from human and mouse embryonic stem cells.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat045
By:
- Huilei Xu;
- Baroukh, Caroline;
- Dannenfelser, Ruth;
- Edward Y. Chen;
- Tan, Christopher M.;
- Yan Kou;
- Yujin E. Kim;
- Lemischka, Ihor R.;
- Ma'ayan, Avi
Publication type:
Article
Tetrahymena Functional Genomics Database (TetraFGD): an integrated resource for Tetrahymena functional genomics.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat008
By:
- Jie Xiong;
- Yuming Lu;
- Jinmei Feng;
- Dongxia Yuan;
- Miao Tian;
- Yue Chang;
- Chengjie Fu;
- Guangying Wang;
- Honghui Zeng;
- Wei Miao
Publication type:
Article
CHD@ZJU: a knowledgebase providing network-based research platform on coronary heart disease.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat047
By:
- Leihong Wu;
- Xiang Li;
- Jihong Yang;
- Yufeng Liu;
- Xiaohui Fan;
- Yiyu Cheng
Publication type:
Article
The YeastGenome app: the Saccharomyces Genome Database at your fingertips.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat004
By:
- Edith D. Wong;
- Karra, Kalpana;
- Hitz, Benjamin C.;
- Eurie L. Hong;
- Cherry, J. Michael
Publication type:
Article
Sequencing and comparative analysis of the gorilla MHC genomic sequence.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat011
By:
- Wilming, Laurens G.;
- Hart, Elizabeth A.;
- Coggill, Penny C.;
- Horton, Roger;
- Gilbert, James G. R.;
- Clee, Chris;
- Jones, Matt;
- Lloyd, Christine;
- Palmer, Sophie;
- Sims, Sarah;
- Whitehead, Siobhan;
- Wiley, David;
- Beck, Stephan;
- Harrow, Jennifer L.
Publication type:
Article
Rapid storage and retrieval of genomic intervals from a relational database system using nested containment lists.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat056
By:
- Wiley, Laura K.;
- Sivley, R. Michael;
- Bush, William S.
Publication type:
Article
Evidence classification of high-throughput protocols and confidence integration in RegulonDB.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bas059
By:
- Weiss, Verena;
- Medina-Rivera, Alejandra;
- Huerta, Araceli M.;
- Santos-Zavaleta, Alberto;
- Salgado, Heladia;
- Morett, Enrique;
- Collado-Vides, Julio
Publication type:
Article
yApoptosis: yeast apoptosis database.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat068
By:
- Wanichthanarak, Kwanjeera;
- Cvijovic, Marija;
- Molt, Andrea;
- Petranovic, Dina
Publication type:
Article
Analysis of disease-associated objects at the Rat Genome Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat046
By:
- Shur-Jen Wang;
- Laulederkind, Stanley J. F.;
- Hayman, G. T.;
- Smith, Jennifer R.;
- Petri, Victoria;
- Lowry, Timothy F.;
- Nigam, Rajni;
- Dwinell, Melinda R.;
- Worthey, Elizabeth A.;
- Munzenmaier, Diane H.;
- Shimoyama, Mary;
- Jacob, Howard J.
Publication type:
Article
dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat014
By:
- Vincent, Jonathan;
- Zhanwu Dai;
- Ravel, Catherine;
- Choulet, Frédéric;
- Mouzeyar, Said;
- Bouzidi, M. Fouad;
- Agier, Marie;
- Martre, Pierre
Publication type:
Article
Annotating the biomedical literature for the human variome.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat019
By:
- Verspoor, Karin;
- Yepes, Antonio Jimeno;
- Cavedon, Lawrence;
- McIntosh, Tara;
- Herten-Crabb, Asha;
- Thomas, Zoë;
- Plazzer, John-Paul
Publication type:
Article
JBioWH: an open-source Java framework for bioinformatics data integration.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat051
By:
- Vera, Roberto;
- Perez-Riverol, Yasset;
- Perez, Sonia;
- Ligeti, Balázs;
- Kertész-Farkas, Attila;
- Pongor, Sándor
Publication type:
Article
Capturing cooperative interactions with the PSI-MI format.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat066
By:
- Van Roey, Kim;
- Orchard, Sandra;
- Kerrien, Samuel;
- Dumousseau, Marine;
- Ricard-Blum, Sylvie;
- Hermjakob, Henning;
- Gibson, Toby J.
Publication type:
Article
Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat062
By:
- Tripathi, Sushil;
- Christie, Karen R.;
- Balakrishnan, Rama;
- Huntley, Rachael;
- Hill, David P.;
- Thommesen, Liv;
- Blake, Judith A.;
- Kuiper, Martin;
- Lægreid, Astrid
Publication type:
Article
Groups: knowledge spreadsheets for symbolic biocomputing.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat061
By:
- Travers, Michael;
- Paley, Suzanne M.;
- Shrager, Jeff;
- Holland, Timothy A.;
- Karp, Peter D.
Publication type:
Article
A database for curating the associations between killer cell immunoglobulin-like receptors and diseases in worldwide populations.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat021
By:
- Takeshita, Louise Y. C.;
- Gonzalez-Galarza, Faviel F.;
- dos Santos, Eduardo J. M.;
- Maia, Maria Helena T.;
- Rahman, Mushome M.;
- Zain, Syed M. S.;
- Middleton, Derek;
- Jones, Andrew R.
Publication type:
Article
The non-obese diabetic mouse sequence, annotation and variation resource: an aid for investigating type 1 diabetes.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat032
By:
- Steward, Charles A.;
- Gonzalez, Jose M.;
- Trevanion, Steve;
- Sheppard, Dan;
- Kerry, Giselle;
- Gilbert, James G. R.;
- Wicker, Linda S.;
- Rogers, Jane;
- Harrow, Jennifer L.
Publication type:
Article
GnpIS: an information system to integrate genetic and genomic data from plants and fungi.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat058
By:
- Steinbach, Delphine;
- Alaux, Michael;
- Amselem, Joelle;
- Choisne, Nathalie;
- Durand, Sophie;
- Flores, Raphaël;
- Keliet, Aminah-Olivia;
- Kimmel, Erik;
- Lapalu, Nicolas;
- Luyten, Isabelle;
- Michotey, Célia;
- Mohellibi, Nacer;
- Pommier, Cyril;
- Reboux, Sébastien;
- Valdenaire, Dorothée;
- Verdelet, Daphné;
- Quesneville, Hadi
Publication type:
Article
PhenoDigm: analyzing curated annotations to associate animal models with human diseases.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat025
By:
- Smedley, Damian;
- Oellrich, Anika;
- Köhler, Sebastian;
- Ruef, Barbara;
- Genetics Project, Sanger Mouse;
- Westerfield, Monte;
- Robinson, Peter;
- Lewis, Suzanna;
- Mungall, Christopher
Publication type:
Article
CrossTope: a curate repository of 3D structures of immunogenic peptide: MHC complexes.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat002
By:
- Sinigaglia, Marialva;
- Antunes, Dinler Amaral;
- Rigo, Maurício Menegatti;
- Bogo Chies, José Artur;
- Vieira, Gustavo Fioravanti
Publication type:
Article
RefPrimeCouch--a reference gene primer CouchApp.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat081
By:
- Silbermann, Jascha;
- Wernicke, Catrin;
- Pospisil, Heike;
- Frohme, Marcus
Publication type:
Article
CREDO: a structural interactomics database for drug discovery.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat049
By:
- Schreyer, Adrian M.;
- Blundell, Tom L.
Publication type:
Article
HTS-DB: an online resource to publish and query data from functional genomics high-throughput siRNA screening projects.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat072
By:
- Saunders, Rebecca E.;
- Instrell, Rachael;
- Rispoli, Rossella;
- Ming Jiang;
- Howell, Michael
Publication type:
Article
PIPEMicroDB: microsatellite database and primer generation tool for pigeonpea genome.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bas054
By:
- Sarika;
- Arora, Vasu;
- Iquebal, M. A.;
- Rai, Anil;
- Kumar, Dinesh
Publication type:
Article
Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat075
By:
- Sanderson, Lacey-Anne;
- Ficklin, Stephen P.;
- Chun-Huai Cheng;
- Sook Jung;
- Feltus, Frank A.;
- Bett, Kirstin E.;
- Main, Dorrie
Publication type:
Article
The MetaboLights repository: curation challenges in metabolomics.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat029
By:
- Salek, Reza M.;
- Haug, Kenneth;
- Conesa, Pablo;
- Hastings, Janna;
- Williams, Mark;
- Mahendraker, Tejasvi;
- Maguire, Eamonn;
- González-Beltrán, Alejandra N.;
- Rocca-Serra, Philippe;
- Sansone, Susanna-Assunta;
- Steinbeck, Christoph
Publication type:
Article
The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat026
By:
- Sadowski, Ivan;
- Breitkreutz, Bobby-Joe;
- Stark, Chri;
- Ting-Cheng Su;
- Dahabieh, Matthew;
- Raithatha, Sheetal;
- Bernhard, Wendy;
- Oughtred, Rose;
- Dolinski, Kara;
- Barreto, Kris;
- Tyers, Mike
Publication type:
Article
Phenol-Explorer 3.0: a major update of the Phenol-Explorer database to incorporate data on the effects of food processing on polyphenol content.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat070
By:
- Rothwell, Joseph A.;
- Perez-Jimenez, Jara;
- Neveu, Vanessa;
- Medina-Remó n, Alexander;
- M'Hiri, Nouha;
- García-Lobato, Paula;
- Manach, Claudine;
- Knox, Craig;
- Eisneró, Roman;
- Wishart, David S.;
- Scalbert, Augustin
Publication type:
Article
Construction of protein phosphorylation networks by data mining, text mining and ontology integration: analysis of the spindle checkpoint.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat038
By:
- Ross, Karen E.;
- Arighi, Cecilia N.;
- Ren, Jia;
- Hongzhan Huang;
- Wu, Cathy H.
Publication type:
Article
Uncovering hidden duplicated content in public transcriptomics data.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat010
By:
- Rosikiewicz, Marta;
- Comte, Aurélie;
- Niknejad, Anne;
- Robinson-Rechavi, Marc;
- Bastian, Frederic B.
Publication type:
Article
Using the OntoGene pipeline for the triage task of BioCreative 2012.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bas053
By:
- Rinaldi, Fabio;
- Clematide, Simon;
- Hafner, Simon;
- Schneider, Gerold;
- Grigonyteė, Gintareė;
- Romacker, Martin;
- Vachon, Therese
Publication type:
Article
Identification and prioritization of novel uncharacterized peptidases for biochemical characterization.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat022
By:
- Rawlings, Neil D.
Publication type:
Article
MalaCards: an integrated compendium for diseases and their annotation.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat018
By:
- Rappaport, Noa;
- Nativ, Noam;
- Stelzer, Gil;
- Twik, Michal;
- Guan-Golan, Yaron;
- Stein, Tsippi Iny;
- Bahir, Iris;
- Belinky, Frida;
- Morrey, C. Paul;
- Safran, Marilyn;
- Lancet, Doron
Publication type:
Article
The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat006
By:
- Rangel, Luiz Thibério;
- Novaes, Jeniffer;
- Durham, Alan M.;
- Madeira, Alda Maria B. N.;
- Gruber, Arthur
Publication type:
Article
PPInterFinder--a mining tool for extracting causal relations on human proteins from literature.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bas052
By:
- Raja, Kalpana;
- Subramani, Suresh;
- Natarajan, Jeyakumar
Publication type:
Article
From manual curation to visualization of gene families and networks across Solanaceae plant species.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat028
By:
- Pujar, Anuradha;
- Menda, Naama;
- Bombarely, Aureliano;
- Edwards, Jeremy D.;
- Strickler, Susan R.;
- Mueller, Lukas A.
Publication type:
Article
RiceSRTFDB: A database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat027
By:
- Priya, Pushp;
- Jain, Mukesh
Publication type:
Article
SUS-BAR: a database of pig proteins with statistically validated structural and functional annotation.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat065
By:
- Piovesan, Damiano;
- Profiti, Giuseppe;
- Martelli, Pier Luigi;
- Fariselli, Piero;
- Fontanesi, Luca;
- Casadio, Rita
Publication type:
Article
Ureidoglycolate hydrolase, amidohydrolase, lyase: how errors in biological databases are incorporated in scientific papers and vice versa.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat071
By:
- Percudani, Riccardo;
- Carnevali, Davide;
- Puggioni, Vincenzo
Publication type:
Article
'What's in the NIDDK CDR?'--public query tools for the NIDDK central data repository.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bas058
By:
- Huaqin Pan;
- Ardini, Mary-Anne;
- Bakalov, Vesselina;
- DeLatte, Michael;
- Eggers, Paul;
- Ganapathi, Laxminarayana;
- Hollingsworth, Craig R.;
- Levy, Joshua;
- Sheping Li;
- Pratt, Joseph;
- Pugh, Norma;
- Ying Qin;
- Rasooly, Rebekah;
- Ray, Helen;
- Richardson, Jean E.;
- Riley, Amanda Flynn;
- Rogers, Susan M.;
- Tan, Sylvia;
- Turner, Charles F.;
- White, Stacie
Publication type:
Article
Biological Database of Images and Genomes: tools for community annotations linking image and genomic information.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat016
By:
- Oberlin, Andrew T.;
- Jurkovic, Dominika A.;
- Balish, Mitchell F.;
- Friedberg, Iddo
Publication type:
Article
Preliminary evaluation of the CellFinder literature curation pipeline for gene expression in kidney cells and anatomical parts.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat020
By:
- Neves, Mariana;
- Damaschun, Alexander;
- Mah, Nancy;
- Lekschas, Fritz;
- Seltmann, Stefanie;
- Stachelscheid, Harald;
- Fontaine, Jean-Fred;
- Kurtz, Andreas;
- Leser, Ulf
Publication type:
Article
RAvariome: a genetic risk variants database for rheumatoid arthritis based on assessment of reproducibility between or within human populations.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat073
By:
- Yoko Nagai;
- Tadashi Imanishi
Publication type:
Article
Use of Gene Ontology Annotation to understand the peroxisome proteome in humans.
Published in:
Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bas062
By:
- Mutowo-Meullenet, Prudence;
- Huntley, Rachael P.;
- Dimmer, Emily C.;
- Alam-Faruque, Yasmin;
- Sawford, Tony;
- Martin, Maria Jesus;
- O'Donovan, Claire;
- Apweiler, Rolf
Publication type:
Article
The challenge of increasing Pfam coverage of the human proteome.
Published in:
2013
By:
- Mistry, Jaina;
- Coggill, Penny;
- Eberhardt, Ruth Y.;
- Deiana, Antonio;
- Giansanti, Andrea;
- Finn, Robert D.;
- Bateman, Alex;
- Punta, Marco
Publication type:
Correction Notice