Works matching IS 17580463 AND DT 2012 AND VI 2012

Results: 65

Assessment of community-submitted ontology annotations from a novel database-journal partnership.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas030
By:
- Berardini, Tanya Z.;
- Li, Donghui;
- Muller, Robert;
- Chetty, Raymond;
- Ploetz, Larry;
- Singh, Shanker;
- Wensel, April;
- Huala, Eva
Publication type:
Article
CancerMA: a web-based tool for automatic meta-analysis of public cancer microarray data.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas055
By:
- Feichtinger, Julia;
- McFarlane, Ramsay J.;
- Larcombe, Lee D.
Publication type:
Article
dbPTB: a database for preterm birth.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar069
By:
- Uzun, Alper;
- Laliberte, Alyse;
- Parker, Jeremy;
- Andrew, Caroline;
- Winterrowd, Emily;
- Sharma, Surendra;
- Istrail, Sorin;
- Padbury, James F.
Publication type:
Article
How to link ontologies and protein–protein interactions to literature: text-mining approaches and the BioCreative experience.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas017
By:
- Krallinger, Martin;
- Leitner, Florian;
- Vazquez, Miguel;
- Salgado, David;
- Marcelle, Christophe;
- Tyers, Mike;
- Valencia, Alfonso;
- Chatr-aryamontri, Andrew
Publication type:
Article
AntiFam: a tool to help identify spurious ORFs in protein annotation.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas003
By:
- Eberhardt, Ruth Y.;
- Haft, Daniel H.;
- Punta, Marco;
- Martin, Maria;
- O'Donovan, Claire;
- Bateman, Alex
Publication type:
Article
HAltORF: a database of predicted out-of-frame alternative open reading frames in human.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas025
By:
- Vanderperre, Benoît;
- Lucier, Jean-François;
- Roucou, Xavier
Publication type:
Article
Phenol-Explorer 2.0: a major update of the Phenol-Explorer database integrating data on polyphenol metabolism and pharmacokinetics in humans and experimental animals.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas031
By:
- Rothwell, Joseph A.;
- Urpi-Sarda, Mireia;
- Boto-Ordoñez, Maria;
- Knox, Craig;
- Llorach, Rafael;
- Eisner, Roman;
- Cruz, Joseph;
- Neveu, Vanessa;
- Wishart, David;
- Manach, Claudine;
- Andres-Lacueva, Cristina;
- Scalbert, Augustin
Publication type:
Article
CreZOO—the European virtual repository of Cre and other targeted conditional driver strains.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas029
By:
- Chandras, Christina;
- Zouberakis, Michael;
- Salimova, Ekaterina;
- Smedley, Damian;
- Rosenthal, Nadia;
- Aidinis, Vassilis
Publication type:
Article
Dr. PIAS 2.0: an update of a database of predicted druggable protein–protein interactions.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas034
By:
- Sugaya, Nobuyoshi;
- Kanai, Satoru;
- Furuya, Toshio
Publication type:
Article
Directly e-mailing authors of newly published papers encourages community curation.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
By:
- Bunt, Stephanie M.;
- Grumbling, Gary B.;
- Field, Helen I.;
- Marygold, Steven J.;
- Brown, Nicholas H.;
- Millburn, Gillian H.
Publication type:
Article
Opportunities for text mining in the FlyBase genetic literature curation workflow.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas039
By:
- McQuilton, Peter
Publication type:
Article
Biocuration workflows and text mining: overview of the BioCreative 2012 Workshop Track II.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
By:
- Lu, Zhiyong;
- Hirschman, Lynette
Publication type:
Article
Towards semi-automated curation: using text mining to recreate the HIV-1, human protein interaction database.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas023
By:
- Jamieson, Daniel G.;
- Gerner, Martin;
- Sarafraz, Farzaneh;
- Nenadic, Goran;
- Robertson, David L.
Publication type:
Article
Using ODIN for a PharmGKB revalidation experiment.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas021
By:
- Rinaldi, Fabio;
- Clematide, Simon;
- Garten, Yael;
- Whirl-Carrillo, Michelle;
- Gong, Li;
- Hebert, Joan M.;
- Sangkuhl, Katrin;
- Thorn, Caroline F.;
- Klein, Teri E.;
- Altman, Russ B.
Publication type:
Article
Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas045
By:
- Drabkin, Harold J.;
- Blake, Judith A.
Publication type:
Article
YeastMine—an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar062
By:
- Balakrishnan, Rama;
- Park, Julie;
- Karra, Kalpana;
- Hitz, Benjamin C.;
- Binkley, Gail;
- Hong, Eurie L.;
- Sullivan, Julie;
- Micklem, Gos;
- Michael Cherry, J.
Publication type:
Article
ASGARD: an open-access database of annotated transcriptomes for emerging model arthropod species.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas048
By:
- Zeng, Victor;
- Extavour, Cassandra G.
Publication type:
Article
Enhancing a Pathway-Genome Database (PGDB) to capture subcellular localization of metabolites and enzymes: the nucleotide-sugar biosynthetic pathways of Populus trichocarpa.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas013
By:
- Nag, Ambarish;
- Karpinets, Tatiana V.;
- Chang, Christopher H.;
- Bar-Peled, Maor
Publication type:
Article
Ontology searching and browsing at the Rat Genome Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
By:
- Laulederkind, Stanley J. F.;
- Tutaj, Marek;
- Shimoyama, Mary;
- Hayman, G. Thomas;
- Lowry, Timothy F.;
- Nigam, Rajni;
- Petri, Victoria;
- Smith, Jennifer R.;
- Wang, Shur-Jen;
- de Pons, Jeff;
- Dwinell, Melinda R.;
- Jacob, Howard J.
Publication type:
Article
Developing a biocuration workflow for AgBase, a non-model organism database.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas038
By:
- Pillai, Lakshmi;
- Chouvarine, Philippe;
- Tudor, Catalina O.;
- Schmidt, Carl J.;
- Vijay-Shanker, K.;
- McCarthy, Fiona M.
Publication type:
Article
Using binary classification to prioritize and curate articles for the Comparative Toxicogenomics Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas050
By:
- Vishnyakova, Dina;
- Pasche, Emilie;
- Ruch, Patrick
Publication type:
Article
ScreenTroll: a searchable database to compare genome-wide yeast screens.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas022
By:
- Thorpe, Peter H.;
- Dittmar, John C.;
- Rothstein, Rodney
Publication type:
Article
The importance of identifying alternative splicing in vertebrate genome annotation.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas014
By:
- Frankish, Adam;
- Mudge, Jonathan M.;
- Thomas, Mark;
- Harrow, Jennifer
Publication type:
Article
Biocuration Virtual Issue 2012.
Published in:
2012
By:
- Gaudet, Pascale;
- Mazumder, Raja
Publication type:
Proceeding
Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar068
By:
- Burge, Sarah;
- Kelly, Elizabeth;
- Lonsdale, David;
- Mutowo-Muellenet, Prudence;
- McAnulla, Craig;
- Mitchell, Alex;
- Sangrador-Vegas, Amaia;
- Yong, Siew-Yit;
- Mulder, Nicola;
- Hunter, Sarah
Publication type:
Article
The mouse–human anatomy ontology mapping project.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar066
By:
- Hayamizu, Terry F.;
- de Coronado, Sherri;
- Fragoso, Gilberto;
- Sioutos, Nicholas;
- Kadin, James A.;
- Ringwald, Martin
Publication type:
Article
Strategies for annotation and curation of translational databases: the eTUMOUR project.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas035
By:
- Julià-Sapé, Margarida;
- Lurgi, Miguel;
- Mier, Mariola;
- Estanyol, Francesc;
- Rafael, Xavier;
- Candiota, Ana Paula;
- Barceló, Anna;
- García, Alina;
- Martínez-Bisbal, M. Carmen;
- Ferrer-Luna, Rubén;
- Moreno-Torres, Àngel;
- Celda, Bernardo;
- Arús, Carles
Publication type:
Article
A hybrid human and machine resource curation pipeline for the Neuroscience Information Framework.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas005
By:
- Bandrowski, A. E.;
- Cachat, J.;
- Li, Y.;
- Müller, H. M.;
- Sternberg, P. W.;
- Ciccarese, P.;
- Clark, T.;
- Marenco, L.;
- Wang, R.;
- Astakhov, V.;
- Grethe, J. S.;
- Martone, M. E.
Publication type:
Article
Collaborative biocuration—text-mining development task for document prioritization for curation.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas037
By:
- Wiegers, Thomas C.;
- Davis, Allan Peter;
- Mattingly, Carolyn J.
Publication type:
Article
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas042
By:
- Kim, Sun;
- Kim, Won;
- Wei, Chih-Hsuan;
- Lu, Zhiyong;
- Wilbur, W. John
Publication type:
Article
Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference.
Published in:
2012
By:
- Gaudet, Pascale;
- Arighi, Cecilia;
- Bastian, Frederic;
- Bateman, Alex;
- Blake, Judith A.;
- Cherry, Michael J.;
- D’Eustachio, Peter;
- Finn, Robert;
- Giglio, Michelle;
- Hirschman, Lynette;
- Kania, Renate;
- Klimke, William;
- Martin, Maria Jesus;
- Karsch-Mizrachi, Ilene;
- Munoz-Torres, Monica;
- Natale, Darren;
- O’Donovan, Claire;
- Ouellette, Francis;
- Pruitt, Kim D.;
- Robinson-Rechavi, Marc
Publication type:
Proceeding
The Units Ontology: a tool for integrating units of measurement in science.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas033
By:
- Gkoutos, Georgios V.;
- Schofield, Paul N.;
- Hoehndorf, Robert
Publication type:
Article
Tracking and coordinating an international curation effort for the CCDS Project.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas008
By:
- Harte, Rachel A.;
- Farrell, Catherine M.;
- Loveland, Jane E.;
- Suner, Marie-Marthe;
- Wilming, Laurens;
- Aken, Bronwen;
- Barrell, Daniel;
- Frankish, Adam;
- Wallin, Craig;
- Searle, Steve;
- Diekhans, Mark;
- Harrow, Jennifer;
- Pruitt, Kim D.
Publication type:
Article
Aptamer base: a collaborative knowledge base to describe aptamers and SELEX experiments.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas006
By:
- Cruz-Toledo, Jose;
- McKeague, Maureen;
- Zhang, Xueru;
- Giamberardino, Amanda;
- McConnell, Erin;
- Francis, Tariq;
- DeRosa, Maria C.;
- Dumontier, Michel
Publication type:
Article
Research resources: curating the new eagle-i discovery system†.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
By:
- Vasilevsky, Nicole;
- Johnson, Tenille;
- Corday, Karen;
- Torniai, Carlo;
- Brush, Matthew;
- Segerdell, Erik;
- Wilson, Melanie;
- Shaffer, Chris;
- Robinson, David;
- Haendel, Melissa
Publication type:
Article
The eFIP system for text mining of protein interaction networks of phosphorylated proteins.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas044
By:
- Tudor, Catalina O.;
- Arighi, Cecilia N.;
- Wang, Qinghua;
- Wu, Cathy H.;
- Vijay-Shanker, K.
Publication type:
Article
The PRINTS database: a fine-grained protein sequence annotation and analysis resource—its status in 2012.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas019
By:
- Attwood, Teresa K.;
- Coletta, Alain;
- Muirhead, Gareth;
- Pavlopoulou, Athanasia;
- Philippou, Peter B.;
- Popov, Ivan;
- Romá-Mateo, Carlos;
- Theodosiou, Athina;
- Mitchell, Alex L.
Publication type:
Article
Text mining in the biocuration workflow: applications for literature curation at WormBase, dictyBase and TAIR.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas040
By:
- Van Auken, Kimberly;
- Fey, Petra;
- Berardini, Tanya Z.;
- Dodson, Robert;
- Cooper, Laurel;
- Li, Donghui;
- Chan, Juancarlos;
- Li, Yuling;
- Basu, Siddhartha;
- Muller, Hans-Michael;
- Chisholm, Rex;
- Huala, Eva;
- Sternberg, Paul W.
Publication type:
Article
DFVF: database of fungal virulence factors.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
By:
- Lu, Tao;
- Yao, Bo;
- Zhang, Chi
Publication type:
Article
Community gene annotation in practice.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas009
By:
- Loveland, Jane E.;
- Gilbert, James G.R.;
- Griffiths, Ed;
- Harrow, Jennifer L.
Publication type:
Article
MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
By:
- Davis, Allan Peter;
- Wiegers, Thomas C.;
- Rosenstein, Michael C.;
- Mattingly, Carolyn J.
Publication type:
Article
Considerations for creating and annotating the budding yeast Genome Map at SGD: a progress report.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar057
By:
- Chan, Esther T.;
- Cherry, J. Michael
Publication type:
Article
Community annotation and bioinformatics workforce development in concert—Little Skate Genome Annotation Workshops and Jamborees.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar064
By:
- Wang, Qinghua;
- Arighi, Cecilia N.;
- King, Benjamin L.;
- Polson, Shawn W.;
- Vincent, James;
- Chen, Chuming;
- Huang, Hongzhan;
- Kingham, Brewster F.;
- Page, Shallee T.;
- Farnum Rendino, Marc;
- Thomas, William Kelley;
- Udwary, Daniel W.;
- Wu, Cathy H.
Publication type:
Article
GrameneMart: the BioMart data portal for the Gramene project.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar056
By:
- Spooner, William;
- Youens-Clark, Ken;
- Staines, Daniel;
- Ware, Doreen
Publication type:
Article
Building an efficient curation workflow for the Arabidopsis literature corpus.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
By:
- Li, Donghui;
- Berardini, Tanya Z.;
- Muller, Robert J.;
- Huala, Eva
Publication type:
Article
Argo: an integrative, interactive, text mining-based workbench supporting curation.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas010
By:
- Rak, Rafal;
- Rowley, Andrew;
- Black, William;
- Ananiadou, Sophia
Publication type:
Article
Accelerating literature curation with text-mining tools: a case study of using PubTator to curate genes in PubMed abstracts.
Published in:
2012
By:
- Wei, Chih-Hsuan;
- Harris, Bethany R.;
- Li, Donghui;
- Berardini, Tanya Z.;
- Huala, Eva;
- Kao, Hung-Yu;
- Lu, Zhiyong
Publication type:
Case Study
CPPsite: a curated database of cell penetrating peptides.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas015
By:
- Gautam, Ankur;
- Singh, Harinder;
- Tyagi, Atul;
- Chaudhary, Kumardeep;
- Kumar, Rahul;
- Kapoor, Pallavi;
- Raghava, G. P. S.
Publication type:
Article
RNAiAtlas: a database for RNAi (siRNA) libraries and their specificity.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas027
By:
- Mazur, Sławek;
- Csucs, Gabor;
- Kozak, Karol
Publication type:
Article
Annotation of functional sites with the Conserved Domain Database.
Published in:
Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bar058
By:
- Derbyshire, Myra K.;
- Lanczycki, Christopher J.;
- Bryant, Stephen H.;
- Marchler-Bauer, Aron
Publication type:
Article