Works matching IS 1756994X AND DT 2021 AND VI 13 AND IP 1

Results: 189

Translating the human microbiome: a path to improving health.
Published in:
2021
By:
- Xavier, Ramnik J.
Publication type:
Editorial
Phylogroup stability contrasts with high within sequence type complex dynamics of Escherichia coli bloodstream infection isolates over a 12-year period.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00892-0
By:
- Royer, Guilhem;
- Darty, Mélanie Mercier;
- Clermont, Olivier;
- Condamine, Bénédicte;
- Laouenan, Cédric;
- Decousser, Jean-Winoc;
- Vallenet, David;
- Lefort, Agnès;
- de Lastours, Victoire;
- Denamur, Erick;
- COLIBAFI and SEPTICOLI groups;
- Wolff, Michel;
- Alavoine, Loubna;
- Duval, Xavier;
- Skurnik, David;
- Woerther, Paul-Louis;
- Andremont, Antoine;
- Carbonnelle, Etienne;
- Lortholary, Olivier;
- Nassif, Xavier
Publication type:
Article
Multi-tissue neocortical transcriptome-wide association study implicates 8 genes across 6 genomic loci in Alzheimer's disease.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00890-2
By:
- Gockley, Jake;
- Montgomery, Kelsey S.;
- Poehlman, William L.;
- Wiley, Jesse C.;
- Liu, Yue;
- Gerasimov, Ekaterina;
- Greenwood, Anna K.;
- Sieberts, Solveig K.;
- Wingo, Aliza P.;
- Wingo, Thomas S.;
- Mangravite, Lara M.;
- Logsdon, Benjamin A.
Publication type:
Article
Single-cell sequencing of the small and AT-skewed genome of malaria parasites.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00889-9
By:
- Liu, Shiwei;
- Huckaby, Adam C.;
- Brown, Audrey C.;
- Moore, Christopher C.;
- Burbulis, Ian;
- McConnell, Michael J.;
- Güler, Jennifer L.
Publication type:
Article
Epigenome-wide association study of kidney function identifies trans-ethnic and ethnic-specific loci.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00877-z
By:
- Breeze, Charles E.;
- Batorsky, Anna;
- Lee, Mi Kyeong;
- Szeto, Mindy D.;
- Xu, Xiaoguang;
- McCartney, Daniel L.;
- Jiang, Rong;
- Patki, Amit;
- Kramer, Holly J.;
- Eales, James M.;
- Raffield, Laura;
- Lange, Leslie;
- Lange, Ethan;
- Durda, Peter;
- Liu, Yongmei;
- Tracy, Russ P.;
- Van Den Berg, David;
- Evans, Kathryn L.;
- Kraus, William E.;
- Shah, Svati
Publication type:
Article
Profiling SARS-CoV-2 mutation fingerprints that range from the viral pangenome to individual infection quasispecies.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00882-2
By:
- Lau, Billy T.;
- Pavlichin, Dmitri;
- Hooker, Anna C.;
- Almeda, Alison;
- Shin, Giwon;
- Chen, Jiamin;
- Sahoo, Malaya K.;
- Huang, Chun Hong;
- Pinsky, Benjamin A.;
- Lee, Ho Joon;
- Ji, Hanlee P.
Publication type:
Article
Whole-genome sequencing with long reads reveals complex structure and origin of structural variation in human genetic variations and somatic mutations in cancer.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00883-1
By:
- Fujimoto, Akihiro;
- Wong, Jing Hao;
- Yoshii, Yukiko;
- Akiyama, Shintaro;
- Tanaka, Azusa;
- Yagi, Hitomi;
- Shigemizu, Daichi;
- Nakagawa, Hidewaki;
- Mizokami, Masashi;
- Shimada, Mihoko
Publication type:
Article
The impact of genomics on precision public health: beyond the pandemic.
Published in:
2021
By:
- Khoury, Muin J.;
- Holt, Kathryn E.
Publication type:
Editorial
Finding associations in a heterogeneous setting: statistical test for aberration enrichment.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00864-4
By:
- Mezlini, Aziz M.;
- Das, Sudeshna;
- Goldenberg, Anna
Publication type:
Article
Optimized polyepitope neoantigen DNA vaccines elicit neoantigen-specific immune responses in preclinical models and in clinical translation.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00872-4
By:
- Li, Lijin;
- Zhang, Xiuli;
- Wang, Xiaoli;
- Kim, Samuel W.;
- Herndon, John M.;
- Becker-Hapak, Michelle K.;
- Carreno, Beatriz M.;
- Myers, Nancy B.;
- Sturmoski, Mark A.;
- McLellan, Michael D.;
- Miller, Christopher A.;
- Johanns, Tanner M.;
- Tan, Benjamin R.;
- Dunn, Gavin P.;
- Fleming, Timothy P.;
- Hansen, Ted H.;
- Goedegebuure, S. Peter;
- Gillanders, William E.
Publication type:
Article
IFN-γ and TNF-α drive a CXCL10+ CCL2+ macrophage phenotype expanded in severe COVID-19 lungs and inflammatory diseases with tissue inflammation.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00881-3
By:
- Zhang, Fan;
- Mears, Joseph R.;
- Shakib, Lorien;
- Beynor, Jessica I.;
- Shanaj, Sara;
- Korsunsky, Ilya;
- Nathan, Aparna;
- Donlin, Laura T.;
- Raychaudhuri, Soumya
Publication type:
Article
Whole-genome sequencing of phenotypically distinct inflammatory breast cancers reveals similar genomic alterations to non-inflammatory breast cancers.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00879-x
By:
- Li, Xiaotong;
- Kumar, Sushant;
- Harmanci, Arif;
- Li, Shantao;
- Kitchen, Robert R.;
- Zhang, Yan;
- Wali, Vikram B.;
- Reddy, Sangeetha M.;
- Woodward, Wendy A.;
- Reuben, James M.;
- Rozowsky, Joel;
- Hatzis, Christos;
- Ueno, Naoto T.;
- Krishnamurthy, Savitri;
- Pusztai, Lajos;
- Gerstein, Mark
Publication type:
Article
In vivo genome editing in mouse restores dystrophin expression in Duchenne muscular dystrophy patient muscle fibers.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00876-0
By:
- Chen, Menglong;
- Shi, Hui;
- Gou, Shixue;
- Wang, Xiaomin;
- Li, Lei;
- Jin, Qin;
- Wu, Han;
- Zhang, Huili;
- Li, Yaqin;
- Wang, Liang;
- Li, Huan;
- Lin, Jinfu;
- Guo, Wenjing;
- Jiang, Zhiwu;
- Yang, Xiaoyu;
- Xu, Anding;
- Zhu, Yuling;
- Zhang, Cheng;
- Lai, Liangxue;
- Li, Xiaoping
Publication type:
Article
Rare deleterious mutations of HNRNP genes result in shared neurodevelopmental disorders.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00870-6
By:
- Gillentine, Madelyn A.;
- Wang, Tianyun;
- Hoekzema, Kendra;
- Rosenfeld, Jill;
- Liu, Pengfei;
- Guo, Hui;
- Kim, Chang N.;
- De Vries, Bert B. A.;
- Vissers, Lisenka E. L. M.;
- Nordenskjold, Magnus;
- Kvarnung, Malin;
- Lindstrand, Anna;
- Nordgren, Ann;
- Gecz, Jozef;
- Iascone, Maria;
- Cereda, Anna;
- Scatigno, Agnese;
- Maitz, Silvia;
- Zanni, Ginevra;
- Bertini, Enrico
Publication type:
Article
A community-driven resource for genomic epidemiology and antimicrobial resistance prediction of Neisseria gonorrhoeae at Pathogenwatch.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00858-2
By:
- Sánchez-Busó, Leonor;
- Yeats, Corin A.;
- Taylor, Benjamin;
- Goater, Richard J.;
- Underwood, Anthony;
- Abudahab, Khalil;
- Argimón, Silvia;
- Ma, Kevin C.;
- Mortimer, Tatum D.;
- Golparian, Daniel;
- Cole, Michelle J.;
- Grad, Yonatan H.;
- Martin, Irene;
- Raphael, Brian H.;
- Shafer, William M.;
- Town, Katy;
- Wi, Teodora;
- Harris, Simon R.;
- Unemo, Magnus;
- Aanensen, David M.
Publication type:
Article
Human breast microbiome correlates with prognostic features and immunological signatures in breast cancer.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00874-2
By:
- Tzeng, Alice;
- Sangwan, Naseer;
- Jia, Margaret;
- Liu, Chin-Chih;
- Keslar, Karen S.;
- Downs-Kelly, Erinn;
- Fairchild, Robert L.;
- Al-Hilli, Zahraa;
- Grobmyer, Stephen R.;
- Eng, Charis
Publication type:
Article
Emerging genetic complexity and rare genetic variants in neurodegenerative brain diseases.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00878-y
By:
- Perrone, Federica;
- Cacace, Rita;
- van der Zee, Julie;
- Van Broeckhoven, Christine
Publication type:
Article
PRMT1-mediated H4R3me2a recruits SMARCA4 to promote colorectal cancer progression by enhancing EGFR signaling.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00871-5
By:
- Yao, Bing;
- Gui, Tao;
- Zeng, Xiangwei;
- Deng, Yexuan;
- Wang, Zhi;
- Wang, Ying;
- Yang, Dongjun;
- Li, Qixiang;
- Xu, Peipei;
- Hu, Ruifeng;
- Li, Xinyu;
- Chen, Bing;
- Wang, Jin;
- Zen, Ke;
- Li, Haitao;
- Davis, Melissa J.;
- Herold, Marco J.;
- Pan, Hua-Feng;
- Jiang, Zhi-Wei;
- Huang, David C. S.
Publication type:
Article
In vivo genome editing in mouse restores dystrophin expression in Duchenne muscular dystrophy patient muscle fibers.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00876-0
By:
- Chen, Menglong;
- Shi, Hui;
- Gou, Shixue;
- Wang, Xiaomin;
- Li, Lei;
- Jin, Qin;
- Wu, Han;
- Zhang, Huili;
- Li, Yaqin;
- Wang, Liang;
- Li, Huan;
- Lin, Jinfu;
- Guo, Wenjing;
- Jiang, Zhiwu;
- Yang, Xiaoyu;
- Xu, Anding;
- Zhu, Yuling;
- Zhang, Cheng;
- Lai, Liangxue;
- Li, Xiaoping
Publication type:
Article
Functional interpretation of ATAD3A variants in neuro-mitochondrial phenotypes.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00873-3
By:
- Yap, Zheng Yie;
- Park, Yo Han;
- Wortmann, Saskia B.;
- Gunning, Adam C.;
- Ezer, Shlomit;
- Lee, Sukyeong;
- Duraine, Lita;
- Wilichowski, Ekkehard;
- Wilson, Kate;
- Mayr, Johannes A.;
- Wagner, Matias;
- Li, Hong;
- Kini, Usha;
- Black, Emily Davis;
- Monaghan, Kristin G.;
- Lupski, James R.;
- Ellard, Sian;
- Westphal, Dominik S.;
- Harel, Tamar;
- Yoon, Wan Hee
Publication type:
Article
Microbiota-associated risk factors for asymptomatic gut colonisation with multi-drug-resistant organisms in a Dutch nursing home.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00869-z
By:
- Ducarmon, Quinten R.;
- Terveer, Elisabeth M.;
- Nooij, Sam;
- Bloem, Michelle N.;
- Vendrik, Karuna E. W.;
- Caljouw, Monique A. A.;
- Sanders, Ingrid M. J. G.;
- van Dorp, Sofie M.;
- Wong, Man C.;
- Zwittink, Romy D.;
- Kuijper, Ed J.
Publication type:
Article
Persistent variations of blood DNA methylation associated with treatment exposures and risk for cardiometabolic outcomes in long-term survivors of childhood cancer in the St. Jude Lifetime Cohort.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00875-1
By:
- Song, Nan;
- Hsu, Chia-Wei;
- Pan, Haitao;
- Zheng, Yinan;
- Hou, Lifang;
- Sim, Jin-ah;
- Li, Zhenghong;
- Mulder, Heather;
- Easton, John;
- Walker, Emily;
- Neale, Geoffrey;
- Wilson, Carmen L.;
- Ness, Kirsten K.;
- Krull, Kevin R.;
- Srivastava, Deo Kumar;
- Yasui, Yutaka;
- Zhang, Jinghui;
- Hudson, Melissa M.;
- Robison, Leslie L.;
- Huang, I-Chan
Publication type:
Article
The global dissemination of hospital clones of Enterococcus faecium.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00868-0
By:
- van Hal, Sebastiaan J.;
- Willems, Rob J. L.;
- Gouliouris, Theodore;
- Ballard, Susan A.;
- Coque, Teresa M.;
- Hammerum, Anette M.;
- Hegstad, Kristin;
- Westh, Hendrik T.;
- Howden, Benjamin P.;
- Malhotra-Kumar, Surbhi;
- Werner, Guido;
- Yanagihara, Katsunori;
- Earl, Ashlee M.;
- Raven, Katherine E.;
- Corander, Jukka;
- Bowden, Rory;
- Enterococcal Group;
- Pinholt, Mette;
- Loens, Katherine;
- Xavier, Basil B.
Publication type:
Article
Emergence and evolution of antimicrobial resistance genes and mutations in Neisseria gonorrhoeae.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00860-8
By:
- Yahara, Koji;
- Ma, Kevin C.;
- Mortimer, Tatum D.;
- Shimuta, Ken;
- Nakayama, Shu-ichi;
- Hirabayashi, Aki;
- Suzuki, Masato;
- Jinnai, Michio;
- Ohya, Hitomi;
- Kuroki, Toshiro;
- Watanabe, Yuko;
- Yasuda, Mitsuru;
- Deguchi, Takashi;
- Eldholm, Vegard;
- Harrison, Odile B.;
- Maiden, Martin C. J.;
- Grad, Yonatan H.;
- Ohnishi, Makoto
Publication type:
Article
Actionability of commercial laboratory sequencing panels for newborn screening and the importance of transparency for parental decision-making.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00867-1
By:
- DeCristo, Daniela M.;
- Milko, Laura V.;
- O'Daniel, Julianne M.;
- Foreman, Ann Katherine M.;
- Mollison, Lonna F.;
- Powell, Bradford C.;
- Powell, Cynthia M.;
- Berg, Jonathan S.
Publication type:
Article
Phenome-wide investigation of the causal associations between childhood BMI and adult trait outcomes: a two-sample Mendelian randomization study.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00865-3
By:
- Dong, Shan-Shan;
- Zhang, Kun;
- Guo, Yan;
- Ding, Jing-Miao;
- Rong, Yu;
- Feng, Jun-Cheng;
- Yao, Shi;
- Hao, Ruo-Han;
- Jiang, Feng;
- Chen, Jia-Bin;
- Wu, Hao;
- Chen, Xiao-Feng;
- Yang, Tie-Lin
Publication type:
Article
Microglial PGC-1α protects against ischemic brain injury by suppressing neuroinflammation.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00863-5
By:
- Han, Bin;
- Jiang, Wei;
- Cui, Pan;
- Zheng, Kai;
- Dang, Chun;
- Wang, Junjie;
- Li, He;
- Chen, Lin;
- Zhang, Rongxin;
- Wang, Qing Mei;
- Ju, Zhenyu;
- Hao, Junwei
Publication type:
Article
Development of double-positive thymocytes at single-cell resolution.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00861-7
By:
- Li, Young;
- Li, Kun;
- Zhu, Lianbang;
- Li, Bin;
- Zong, Dandan;
- Cai, Pengfei;
- Jiang, Chen;
- Du, Pengcheng;
- Lin, Jun;
- Qu, Kun
Publication type:
Article
OncoGEMINI: software for investigating tumor variants from multiple biopsies with integrated cancer annotations.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00854-6
By:
- Nicholas, Thomas J.;
- Cormier, Michael J.;
- Huang, Xiaomeng;
- Qiao, Yi;
- Marth, Gabor T.;
- Quinlan, Aaron R.
Publication type:
Article
CACTUS: integrating clonal architecture with genomic clustering and transcriptome profiling of single tumor cells.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00842-w
By:
- Shafighi, Shadi Darvish;
- Kiełbasa, Szymon M.;
- Sepúlveda-Yáñez, Julieta;
- Monajemi, Ramin;
- Cats, Davy;
- Mei, Hailiang;
- Menafra, Roberta;
- Kloet, Susan;
- Veelken, Hendrik;
- van Bergen, Cornelis A.M.;
- Szczurek, Ewa
Publication type:
Article
Integration of whole genome sequencing into a healthcare setting: high diagnostic rates across multiple clinical entities in 3219 rare disease patients.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00855-5
By:
- Stranneheim, Henrik;
- Lagerstedt-Robinson, Kristina;
- Magnusson, Måns;
- Kvarnung, Malin;
- Nilsson, Daniel;
- Lesko, Nicole;
- Engvall, Martin;
- Anderlid, Britt-Marie;
- Arnell, Henrik;
- Johansson, Carolina Backman;
- Barbaro, Michela;
- Björck, Erik;
- Bruhn, Helene;
- Eisfeldt, Jesper;
- Freyer, Christoph;
- Grigelioniene, Giedre;
- Gustavsson, Peter;
- Hammarsjö, Anna;
- Hellström-Pigg, Maritta;
- Iwarsson, Erik
Publication type:
Article
Molecular features of untreated breast cancer and initial metastatic event inform clinical decision-making and predict outcome: long-term results of ESOPE, a single-arm prospective multicenter study.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00862-6
By:
- Callens, Céline;
- Driouch, Keltouma;
- Boulai, Anaïs;
- Tariq, Zakia;
- Comte, Aurélie;
- Berger, Frédérique;
- Belin, Lisa;
- Bièche, Ivan;
- Servois, Vincent;
- Legoix, Patricia;
- Bernard, Virginie;
- Baulande, Sylvain;
- Chemlali, Walid;
- Bidard, François-Clément;
- Fourchotte, Virginie;
- Salomon, Anne Vincent-;
- Brain, Etienne;
- Lidereau, Rosette;
- Bachelot, Thomas;
- Saghatchian, Mahasti
Publication type:
Article
SARS-CoV-2 vaccine ChAdOx1 nCoV-19 infection of human cell lines reveals low levels of viral backbone gene transcription alongside very high levels of SARS-CoV-2 S glycoprotein gene transcription.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00859-1
By:
- Almuqrin, Abdulaziz;
- Davidson, Andrew D.;
- Williamson, Maia Kavanagh;
- Lewis, Philip A.;
- Heesom, Kate J.;
- Morris, Susan;
- Gilbert, Sarah C.;
- Matthews, David A.
Publication type:
Article
Explaining decisions of graph convolutional neural networks: patient-specific molecular subnetworks responsible for metastasis prediction in breast cancer.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00845-7
By:
- Chereda, Hryhorii;
- Bleckmann, Annalen;
- Menck, Kerstin;
- Perera-Bel, Júlia;
- Stegmaier, Philip;
- Auer, Florian;
- Kramer, Frank;
- Leha, Andreas;
- Beißbarth, Tim
Publication type:
Article
Editing GWAS: experimental approaches to dissect and exploit disease-associated genetic variation.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00857-3
By:
- Rao, Shuquan;
- Yao, Yao;
- Bauer, Daniel E.
Publication type:
Article
Genetic disruption of serine biosynthesis is a key driver of macular telangiectasia type 2 aetiology and progression.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00848-4
By:
- Bonelli, Roberto;
- Ansell, Brendan R. E.;
- Lotta, Luca;
- Scerri, Thomas;
- Clemons, Traci E.;
- Leung, Irene;
- Peto, Tunde;
- Bird, Alan C.;
- Sallo, Ferenc B.;
- Langenberg, Claudia;
- Bahlo, Melanie
Publication type:
Article
Genetic susceptibility, elevated blood pressure, and risk of atrial fibrillation: a Mendelian randomization study.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00849-3
By:
- Nazarzadeh, Milad;
- Pinho-Gomes, Ana-Catarina;
- Bidel, Zeinab;
- Canoy, Dexter;
- Dehghan, Abbas;
- Smith Byrne, Karl;
- Bennett, Derrick A.;
- Smith, George Davey;
- Rahimi, Kazem
Publication type:
Article
Trans-ethnic gut microbiota signatures of type 2 diabetes in Denmark and India.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00856-4
By:
- Alvarez-Silva, Camila;
- Kashani, Alireza;
- Hansen, Tue Haldor;
- Pinna, Nishal Kumar;
- Anjana, Ranjit Mohan;
- Dutta, Anirban;
- Saxena, Shruti;
- Støy, Julie;
- Kampmann, Ulla;
- Nielsen, Trine;
- Jørgensen, Torben;
- Gnanaprakash, Visvanathan;
- Gnanavadivel, Rameshkumar;
- Sukumaran, Aswath;
- Rani, Coimbatore Subramanian Shanthi;
- Færch, Kristine;
- Radha, Venkatesan;
- Balasubramanyam, Muthuswamy;
- Nair, Gopinath Balakrish;
- Das, Bhabatosh
Publication type:
Article
Trans-ethnic gut microbial signatures of prediabetic subjects from India and Denmark.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00851-9
By:
- Pinna, Nishal Kumar;
- Anjana, Ranjit Mohan;
- Saxena, Shruti;
- Dutta, Anirban;
- Gnanaprakash, Visvanathan;
- Rameshkumar, Gnanavadivel;
- Aswath, Sukumaran;
- Raghavan, Srividhya;
- Rani, Coimbatore Subramanian Shanthi;
- Radha, Venkatesan;
- Balasubramanyam, Muthuswamy;
- Pant, Archana;
- Nielsen, Trine;
- Jørgensen, Torben;
- Færch, Kristine;
- Kashani, Alireza;
- Silva, Maria Camila Alvarez;
- Vestergaard, Henrik;
- Hansen, Tue Haldor;
- Hansen, Torben
Publication type:
Article
Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00853-7
By:
- Plichta, Damian R.;
- Somani, Juhi;
- Pichaud, Matthieu;
- Wallace, Zachary S.;
- Fernandes, Ana D.;
- Perugino, Cory A.;
- Lähdesmäki, Harri;
- Stone, John H.;
- Vlamakis, Hera;
- Chung, Daniel C.;
- Khanna, Dinesh;
- Pillai, Shiv;
- Xavier, Ramnik J.
Publication type:
Article
Clinical-grade whole-genome sequencing and 3′ transcriptome analysis of colorectal cancer patients.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00852-8
By:
- Stodolna, Agata;
- He, Miao;
- Vasipalli, Mahesh;
- Kingsbury, Zoya;
- Becq, Jennifer;
- Stockton, Joanne D.;
- Dilworth, Mark P.;
- James, Jonathan;
- Sillo, Toju;
- Blakeway, Daniel;
- Ward, Stephen T.;
- Ismail, Tariq;
- Ross, Mark T.;
- Beggs, Andrew D.
Publication type:
Article
Biallelic variants in COPB1 cause a novel, severe intellectual disability syndrome with cataracts and variable microcephaly.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00850-w
By:
- Macken, William L.;
- Godwin, Annie;
- Wheway, Gabrielle;
- Stals, Karen;
- Nazlamova, Liliya;
- Ellard, Sian;
- Alfares, Ahmed;
- Aloraini, Taghrid;
- AlSubaie, Lamia;
- Alfadhel, Majid;
- Alajaji, Sulaiman;
- Wai, Htoo A.;
- Self, Jay;
- Douglas, Andrew G. L.;
- Kao, Alexander P.;
- Guille, Matthew;
- Baralle, Diana
Publication type:
Article
ClinSV: clinical grade structural and copy number variant detection from whole genome sequencing data.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00841-x
By:
- Minoche, Andre E.;
- Lundie, Ben;
- Peters, Greg B.;
- Ohnesorg, Thomas;
- Pinese, Mark;
- Thomas, David M.;
- Zankl, Andreas;
- Roscioli, Tony;
- Schonrock, Nicole;
- Kummerfeld, Sarah;
- Burnett, Leslie;
- Dinger, Marcel E.;
- Cowley, Mark J.
Publication type:
Article
Intra-host variation and evolutionary dynamics of SARS-CoV-2 populations in COVID-19 patients.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00847-5
By:
- Wang, Yanqun;
- Wang, Daxi;
- Zhang, Lu;
- Sun, Wanying;
- Zhang, Zhaoyong;
- Chen, Weijun;
- Zhu, Airu;
- Huang, Yongbo;
- Xiao, Fei;
- Yao, Jinxiu;
- Gan, Mian;
- Li, Fang;
- Luo, Ling;
- Huang, Xiaofang;
- Zhang, Yanjun;
- Wong, Sook-san;
- Cheng, Xinyi;
- Ji, Jingkai;
- Ou, Zhihua;
- Xiao, Minfeng
Publication type:
Article
CADD-Splice—improving genome-wide variant effect prediction using deep learning-derived splice scores.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00835-9
By:
- Rentzsch, Philipp;
- Schubach, Max;
- Shendure, Jay;
- Kircher, Martin
Publication type:
Article
Development of genome-wide polygenic risk scores for lipid traits and clinical applications for dyslipidemia, subclinical atherosclerosis, and diabetes cardiovascular complications among East Asians.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00831-z
By:
- Tam, Claudia H. T.;
- Lim, Cadmon K. P.;
- Luk, Andrea O. Y.;
- Ng, Alex C. W.;
- Lee, Heung-man;
- Jiang, Guozhi;
- Lau, Eric S. H.;
- Fan, Baoqi;
- Wan, Raymond;
- Kong, Alice P. S.;
- Tam, Wing-hung;
- Ozaki, Risa;
- Chow, Elaine Y. K.;
- Lee, Ka-fai;
- Siu, Shing-chung;
- Hui, Grace;
- Tsang, Chiu-chi;
- Lau, Kam-piu;
- Leung, Jenny Y. Y.;
- Tsang, Man-wo
Publication type:
Article
The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00844-8
By:
- Young, Caroline;
- Wood, Henry M.;
- Seshadri, Ramakrishnan Ayloor;
- Van Nang, Pham;
- Vaccaro, Carlos;
- Melendez, Luis Contreras;
- Bose, Mayilvahanan;
- Van Doi, Mai;
- Piñero, Tamara Alejandra;
- Valladares, Camilo Tapia;
- Arguero, Julieta;
- Balaguer, Alba Fuentes;
- Thompson, Kelsey N.;
- Yan, Yan;
- Huttenhower, Curtis;
- Quirke, Philip
Publication type:
Article
Microbiota restoration reduces antibiotic-resistant bacteria gut colonization in patients with recurrent Clostridioides difficile infection from the open-label PUNCH CD study.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00843-9
By:
- Langdon, Amy;
- Schwartz, Drew J.;
- Bulow, Christopher;
- Sun, Xiaoqing;
- Hink, Tiffany;
- Reske, Kimberly A.;
- Jones, Courtney;
- Burnham, Carey-Ann D.;
- Dubberke, Erik R.;
- Dantas, Gautam
Publication type:
Article
The colorectal cancer-associated faecal microbiome of developing countries resembles that of developed countries.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00844-8
By:
- Young, Caroline;
- Wood, Henry M.;
- Seshadri, Ramakrishnan Ayloor;
- Van Nang, Pham;
- Vaccaro, Carlos;
- Melendez, Luis Contreras;
- Bose, Mayilvahanan;
- Van Doi, Mai;
- Piñero, Tamara Alejandra;
- Valladares, Camilo Tapia;
- Arguero, Julieta;
- Balaguer, Alba Fuentes;
- Thompson, Kelsey N.;
- Yan, Yan;
- Huttenhower, Curtis;
- Quirke, Philip
Publication type:
Article
Microbiota restoration reduces antibiotic-resistant bacteria gut colonization in patients with recurrent Clostridioides difficile infection from the open-label PUNCH CD study.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00843-9
By:
- Langdon, Amy;
- Schwartz, Drew J.;
- Bulow, Christopher;
- Sun, Xiaoqing;
- Hink, Tiffany;
- Reske, Kimberly A.;
- Jones, Courtney;
- Burnham, Carey-Ann D.;
- Dubberke, Erik R.;
- Dantas, Gautam
Publication type:
Article