Works matching IS 17560381 AND DT 2016 AND VI 9

Results: 42

The Interaction Network Ontologysupported modeling and mining of complex interactions represented with multiple keywords in biomedical literature.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0118-0

By:

Özgür, Arzucan;
Junguk Hur;
Yongqun He

Publication type:

Article

Complex systems analysis of bladder cancer susceptibility reveals a role for decarboxylase activity in two genome-wide association studies.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0119-z

By:

Cheng, Samantha;
Andrew, Angeline S.;
Andrews, Peter C.;
Moore, Jason H.

Publication type:

Article

matK-QR classifier: a patterns based approach for plant species identification.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0120-6

By:

More, Ravi Prabhakar;
Mane, Rupali Chandrashekhar;
Purohit, Hemant J.

Publication type:

Article

MISSEL: a method to identify a large number of small species-specific genomic subsequences and its application to viruses classification.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0116-2

By:

Fiscon, Giulia;
Weitschek, Emanuel;
Cella, Eleonora;
Presti, Alessandra Lo;
Giovanetti, Marta;
Babakir-Mina, Muhammed;
Ciotti, Marco;
Ciccozzi, Massimo;
Pierangeli, Alessandra;
Bertolazzi, Paola;
Felici, Giovanni

Publication type:

Article

FEDRR: fast, exhaustive detection of redundant hierarchical relations for quality improvement of large biomedical ontologies.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0110-8

By:

Guangming Xing;
Guo-Qiang Zhang;
Licong Cui

Publication type:

Article

Adaptive swarm cluster-based dynamic multi-objective synthetic minority oversampling technique algorithm for tackling binary imbalanced datasets in biomedical data classification.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0117-1

By:

Jinyan Li;
Fong, Simon;
Yunsick Sung;
Kyungeun Cho;
Wong, Raymond;
Wong, Kelvin K. L.

Publication type:

Article

Considerations for higher efficiency and productivity in research activities.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0115-3

By:

Forero, Diego A.;
Moore, Jason H.

Publication type:

Article

On the evaluation of the fidelity of supervised classifiers in the prediction of chimeric RNAs.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0112-6

By:

Beaumeunier, Sacha;
Audoux, Jérôme;
Boureux, Anthony;
Ruffle, Florence;
Commes, Thérèse;
Philippe, Nicolas;
Alves, Ronnie

Publication type:

Article

Low-mass-ion discriminant equation (LOME) for ovarian cancer screening.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0111-7

By:

Jun Hwa Lee;
Byong Chul Yoo;
Yun Hwan Kim;
Sun-A Ahn;
Seung-Gu Yeo;
Jae Youl Cho;
Kyung-Hee Kim;
Seung Cheol Kim

Publication type:

Article

Developing a modular architecture for creation of rule-based clinical diagnostic criteria.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0113-5

By:

Na Hong;
Pathak, Jyotishman;
Chute, Christopher G.;
Guoqian Jiang

Publication type:

Article

Compensation of feature selection biases accompanied with improved predictive performance for binary classification by using a novel ensemble feature selection approach.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0114-4

By:

Neumann, Ursula;
Riemenschneider, Mona;
Sowa, Jan-Peter;
Baars, Theodor;
Kälsch, Julia;
Canbay, Ali;
Heider, Dominik

Publication type:

Article

ProtNN: fast and accurate protein 3D-structure classification in structural and topological space.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0108-2

By:

Dhifli, Wajdi;
Diallo, Abdoulaye Baniré

Publication type:

Article

The tip of the iceberg: challenges of accessing hospital electronic health record data for biological data mining.

Published in:

2016

By:

Denaxas, Spiros C.;
Asselbergs, Folkert W.;
Moore, Jason H.

Publication type:

Editorial

Functional networks inference from rule-based machine learning models.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0106-4

By:

Lazzarini, Nicola;
Widera, Paweł;
Williamson, Stuart;
Heer, Rakesh;
Krasnogor, Natalio;
Bacardit, Jaume

Publication type:

Article

Principal component analysis based unsupervised feature extraction applied to budding yeast temporally periodic gene expression.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0101-9

By:

Taguchi, Y.-h.

Publication type:

Article

Data integration to prioritize drugs using genomics and curated data.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0097-1

By:

Louhimo, Riku;
Laakso, Marko;
Belitskin, Denis;
Klefström, Juha;
Lehtonen, Rainer;
Hautaniemi, Sampsa

Publication type:

Article

A biologically informed method for detecting rare variant associations.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0107-3

By:

Buchanan Moore, Carrie Colleen;
Okula Basile, Anna;
Wallace, John Robert;
Frase, Alex Thomas;
DeRiggi Ritchie, Marylyn DeRiggi

Publication type:

Article

msBiodat analysis tool, big data analysis for high-throughput experiments.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0104-6

By:

Muñoz-Torres, Pau M.;
Rokć, Filip;
Belužic, Robert;
Grbeša, Ivana;
Vugrek, Oliver

Publication type:

Article

Joint analysis of multiple high-dimensional data types using sparse matrix approximations of rank-1 with applications to ovarian and liver cancer.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0103-7

By:

Okimoto, Gordon;
Zeinalzadeh, Ashkan;
Wenska, Tom;
Loomis, Michael;
Nation, James B.;
Fabre, Tiphaine;
Tiirikainen, Maarit;
Hernandez, Brenda;
Chan, Owen;
Wong, Linda;
Kwee, Sandi

Publication type:

Article

Representing and querying disease networks using graph databases.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0102-8

By:

Lysenko, Artem;
Roznovăț, Irina A.;
Saqi, Mansoor;
Mazein, Alexander;
Rawlings, Christopher J.;
Auffray, Charles

Publication type:

Article

Joint analysis of multiple high-dimensional data types using sparse matrix approximations of rank-1 with applications to ovarian and liver cancer.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0103-7

By:

Okimoto, Gordon;
Zeinalzadeh, Ashkan;
Wenska, Tom;
Loomis, Michael;
Nation, James B.;
Fabre, Tiphaine;
Tiirikainen, Maarit;
Hernandez, Brenda;
Chan, Owen;
Wong, Linda;
Kwee, Sandi

Publication type:

Article

Mango: combining and analyzing heterogeneous biological networks.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0105-5

By:

Jennifer Chang;
Hyejin Cho;
Hui-Hsien Chou

Publication type:

Article

SePIA: RNA and small RNA sequence processing, integration, and analysis.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0099-z

By:

Icay, Katherine;
Ping Chen;
Cervera, Alejandra;
Rantanen, Ville;
Lehtonen, Rainer;
Hautaniemi, Sampsa

Publication type:

Article

Machine learning algorithms for mode-of-action classification in toxicity assessment.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0098-0

By:

Yile Zhang;
Yau Shu Wong;
Jian Deng;
Anton, Cristina;
Gabos, Stephan;
Weiping Zhang;
Huang, Dorothy Yu;
Can Jin

Publication type:

Article

Identification of genetic interaction networks via an evolutionary algorithm evolved Bayesian network.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0094-4

By:

Ruowang Li;
Dudek, Scott M.;
Dokyoon Kim;
Hall, Molly A.;
Bradford, Yuki;
Peissig, Peggy L.;
Brilliant, Murray H.;
Linneman, James G.;
McCarty, Catherine A.;
Le Bao;
Ritchie, Marylyn D.

Publication type:

Article

Building a glaucoma interaction network using a text mining approach.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0096-2

By:

Soliman, Maha;
Nasraoui, Olfa;
Cooper, Nigel G. F.

Publication type:

Article

Visual programming for next-generation sequencing data analytics.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0095-3

By:

Milicchio, Franco;
Rose, Rebecca;
Jiang Bian;
Jae Min;
Prosperi, Mattia

Publication type:

Article

Exploiting HIV-1 protease and reverse transcriptase cross-resistance information for improved drug resistance prediction by means of multi-label classification.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0089-1

By:

Riemenschneider, Mona;
Senge, Robin;
Neumann, Ursula;
Hüllermeier, Eyke;
Heider, Dominik

Publication type:

Article

The golden era of biomedical informatics has begun.

Published in:

2016

By:

Moore, Jason H.;
Holmes, John H.

Publication type:

Editorial

Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0090-8

By:

Ma Liang;
Castle Raley;
Xin Zheng;
Geetha Kutty;
Gogineni, Emile;
Sherman, Brad T.;
Qiang Sun;
Xiongfong Chen;
Skelly, Thomas;
Jones, Kristine;
Stephens, Robert;
Bin Zhou;
Lau, William;
Johnson, Calvin;
Tomozumi Imamichi;
Minkang Jiang;
Robin Dewar;
Lempicki, Richard A.;
Bao Tran;
Kovacs, Joseph A.

Publication type:

Article

Robust normalization protocols for multiplexed fluorescence bioimage analysis.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0088-2

By:

Ahmed Raza, Shan E.;
Langenkämper, Daniel;
Sirinukunwattana, Korsuk;
Epstein, David;
Nattkemper, Tim W.;
Rajpoot, Nasir M.

Publication type:

Article

Detecting gene-gene interactions using a permutation-based random forest method.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0093-5

By:

Jing Li;
Malley, James D.;
Andrew, Angeline S.;
Karagas, Margaret R.;
Moore, Jason H.

Publication type:

Article

Erratum to: Evolving hard problems: generating human genetics datasets with a complex etiology.

Published in:: 2016
Publication type:: Correction Notice

Evolutionary triangulation: informing genetic association studies with evolutionary evidence.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0091-7

By:

Minjun Huang;
Graham, Britney E.;
Ge Zhang;
Harder, Reed;
Kodaman, Nuri;
Moore, Jason H.;
Muglia, Louis;
Williams, Scott M.

Publication type:

Article

SequenceCEROSENE: a computational method and web server to visualize spatial residue neighborhoods at the sequence level.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0083-7

By:

Heinke, Florian;
Bittrich, Sebastian;
Kaiser, Florian;
Labudde, Dirk

Publication type:

Article

Erratum to: BioDB extractor: customized data extraction system for commonly used bioinformatics databases.

Published in:: 2016
Publication type:: Correction Notice

The prediction accuracy of dynamic mixed-effects models in clustered data.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0084-6

By:

Finkelman, Brian S.;
French, Benjamin;
Kimme, Stephen E.

Publication type:

Article

Prediction of donor splice sites using random forest with a new sequence encoding approach.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0086-4

By:

Kumar Meher, Prabina;
Kumar Sahu, Tanmaya;
Ramakrishna Rao, Atmakuri

Publication type:

Article

Network-based analysis of genetic variants associated with hippocampal volume in Alzheimer's disease: a study of ADNI cohorts.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0082-8

By:

Song, Ailin;
Jingwen Yan;
Sungeun Kim;
Risacher, Shannon Leigh;
Wong, Aaron K.;
Saykin, Andrew J.;
Li Shen;
Greene, Casey S.

Publication type:

Article

Iteratively refining breast cancer intrinsic subtypes in the METABRIC dataset.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-015-0078-9

By:

Milioli, Heloisa H.;
Vimieiro, Renato;
Tishchenko, Inna;
Riveros, Carlos;
Berretta, Regina;
Moscato, Pablo

Publication type:

Article

A call for biological data mining approaches in epidemiology.

Published in:

2016

By:

Lynch, Shannon M.;
Moore, Jason H.

Publication type:

Editorial

r2VIM: A new variable selection method for random forests in genome-wide association studies.

Published in:

BioData Mining, 2016, v. 9, p. 1, doi. 10.1186/s13040-016-0087-3

By:

Szymczak, Silke;
Holzinger, Emily;
Dasgupta, Abhijit;
Malley, James D.;
Molloy, Anne M.;
Mills, James L.;
Brody, Lawrence C.;
Stambolian, Dwight;
Bailey-Wilson, Joan E.

Publication type:

Article