Works matching IS 17558794 AND DT 2020 AND VI 13

Results: 194

Comprehensive chromosomal aberrations in a case of a patient with TCF3-HLFpositive BCP-ALL.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0709-y

By:

Lejman, Monika;
Włodarczyk, Monika;
Zawitkowska, Joanna;
Kowalczyk, Jerzy R.

Publication type:

Article

Differential co-expression analysis reveals early stage transcriptomic decoupling in alzheimer's disease.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0689-y

By:

Upadhyaya, Yurika;
Xie, Linhui;
Salama, Paul;
Cao, Sha;
Nho, Kwangsik;
Saykin, Andrew J.;
Yan, Jingwen;
Alzheimer's Disease Neuroimaging Initiative, for the

Publication type:

Article

Highly robust model of transcription regulator activity predicts breast cancer overall survival.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0688-z

By:

Dong, Chuanpeng;
Liu, Jiannan;
Chen, Steven X.;
Dong, Tianhan;
Jiang, Guanglong;
Wang, Yue;
Wu, Huanmei;
Reiter, Jill L.;
Liu, Yunlong

Publication type:

Article

Pseudogene-gene functional networks are prognostic of patient survival in breast cancer.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0687-0

By:

Smerekanych, Sasha;
Johnson, Travis S.;
Huang, Kun;
Zhang, Yan

Publication type:

Article

Deep learning-based cancer survival prognosis from RNA-seq data: approaches and evaluations.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0686-1

By:

Huang, Zhi;
Johnson, Travis S.;
Han, Zhi;
Helm, Bryan;
Cao, Sha;
Zhang, Chi;
Salama, Paul;
Rizkalla, Maher;
Yu, Christina Y.;
Cheng, Jun;
Xiang, Shunian;
Zhan, Xiaohui;
Zhang, Jie;
Huang, Kun

Publication type:

Article

Somatic synonymous mutations in regulatory elements contribute to the genetic aetiology of melanoma.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0685-2

By:

Zhang, Di;
Xia, Junfeng

Publication type:

Article

Adaptive Fisher method detects dense and sparse signals in association analysis of SNV sets.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0684-3

By:

Cai, Xiaoyu;
Chang, Lo-Bin;
Potter, Jordan;
Song, Chi

Publication type:

Article

ProGeo-neo: a customized proteogenomic workflow for neoantigen prediction and selection.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0683-4

By:

Li, Yuyu;
Wang, Guangzhi;
Tan, Xiaoxiu;
Ouyang, Jian;
Zhang, Menghuan;
Song, Xiaofeng;
Liu, Qi;
Leng, Qibin;
Chen, Lanming;
Xie, Lu

Publication type:

Article

A pan-cancer study of class-3 semaphorins as therapeutic targets in cancer.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0682-5

By:

Zhang, Xiaoli;
Klamer, Brett;
Li, Jin;
Fernandez, Soledad;
Li, Lang

Publication type:

Article

SCNrank: spectral clustering for network-based ranking to reveal potential drug targets and its application in pancreatic ductal adenocarcinoma.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0681-6

By:

Liu, Enze;
Zhang, Zhuang Zhuang;
Cheng, Xiaolin;
Liu, Xiaoqi;
Cheng, Lijun

Publication type:

Article

The landscape of alternative splicing in HIV-1 infected CD4 T-cells.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0680-7

By:

Byun, Seyoun;
Han, Seonggyun;
Zheng, Yue;
Planelles, Vicente;
Lee, Younghee

Publication type:

Article

Prediction of circRNA-disease associations based on inductive matrix completion.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0679-0

By:

Li, Menglu;
Liu, Mengya;
Bin, Yannan;
Xia, Junfeng

Publication type:

Article

The International Conference on Intelligent Biology and Medicine 2019 (ICIBM 2019): computational methods and applications in medical genomics.

Published in:

2020

By:

Zhang, Chi;
Mathé, Ewy;
Ning, Xia;
Zhao, Zhongming;
Wang, Kai;
Li, Lang;
Guo, Yan

Publication type:

Editorial

Convolutional neural network models for cancer type prediction based on gene expression.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0677-2

By:

Mostavi, Milad;
Chiu, Yu-Chiao;
Huang, Yufei;
Chen, Yidong

Publication type:

Article

Comparative evaluation of network features for the prediction of breast cancer metastasis.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0676-3

By:

Adnan, Nahim;
Liu, Zhijie;
Huang, Tim H.M.;
Ruan, Jianhua

Publication type:

Article

An integrative, genomic, transcriptomic and network-assisted study to identify genes associated with human cleft lip with or without cleft palate.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0675-4

By:

Yan, Fangfang;
Dai, Yulin;
Iwata, Junichi;
Zhao, Zhongming;
Jia, Peilin

Publication type:

Article

Dense module searching for gene networks associated with multiple sclerosis.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0674-5

By:

Manuel, Astrid M.;
Dai, Yulin;
Freeman, Leorah A.;
Jia, Peilin;
Zhao, Zhongming

Publication type:

Article

Transcriptome analysis reveals the link between lncRNA-mRNA co-expression network and tumor immune microenvironment and overall survival in head and neck squamous cell carcinoma.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0707-0

By:

Zhong, Zhaoming;
Hong, Min;
Chen, Xiao;
Xi, Yan;
Xu, Yuanyuan;
Kong, Deyu;
Deng, Jun;
Li, Yun;
Hu, Rui;
Sun, Chuanzheng;
Liang, Jin

Publication type:

Article

Identification of miRNA-mRNA associations in hepatocellular carcinoma using hierarchical integrative model.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0706-1

By:

Varghese, Rency S.;
Zhou, Yuan;
Barefoot, Megan;
Chen, Yifan;
Di Poto, Cristina;
Balla, Abdalla Kara;
Oliver, Everett;
Sherif, Zaki A.;
Kumar, Deepak;
Kroemer, Alexander H.;
Tadesse, Mahlet G.;
Ressom, Habtom W.

Publication type:

Article

Sensitivity to gene dosage and gene expression affects genes with copy number variants observed among neuropsychiatric diseases.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0699-9

By:

Yamasaki, Maria;
Makino, Takashi;
Khor, Seik-Soon;
Toyoda, Hiromi;
Miyagawa, Taku;
Liu, Xiaoxi;
Kuwabara, Hitoshi;
Kano, Yukiko;
Shimada, Takafumi;
Sugiyama, Toshiro;
Nishida, Hisami;
Sugaya, Nagisa;
Tochigi, Mamoru;
Otowa, Takeshi;
Okazaki, Yuji;
Kaiya, Hisanobu;
Kawamura, Yoshiya;
Miyashita, Akinori;
Kuwano, Ryozo;
Kasai, Kiyoto

Publication type:

Article

Potential role of genomic imprinted genes and brain developmental related genes in autism.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0693-2

By:

Li, Jian;
Lin, Xue;
Wang, Mingya;
Hu, Yunyun;
Xue, Kaiyu;
Gu, Shuanglin;
Lv, Li;
Huang, Saijun;
Xie, Wei

Publication type:

Article

Gene co-expression networks are associated with obesity-related traits in kidney transplant recipients.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0702-5

By:

Jaime-Lara, Rosario B.;
Roy, Abhrarup;
Wang, Yupeng;
Stanfill, Ansley;
Cashion, Ann K.;
Joseph, Paule V.

Publication type:

Article

Long noncoding RNA and messenger RNA abnormalities in pediatric sepsis: a preliminary study.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0698-x

By:

Bai, Zhenjiang;
Li, Yiping;
Li, Yanhong;
Pan, Jian;
Wang, Jian;
Fang, Fang

Publication type:

Article

A de novo 2.2 Mb recurrent 17q23.1q23.2 deletion unmasks novel putative regulatory non-coding SNVs associated with lethal lung hypoplasia and pulmonary hypertension: a case report.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0701-6

By:

Karolak, Justyna A.;
Gambin, Tomasz;
Honey, Engela M.;
Slavik, Tomas;
Popek, Edwina;
Stankiewicz, Paweł

Publication type:

Article

Specific chromatin landscapes and transcription factors couple breast cancer subtype with metastatic relapse to lung or brain.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0695-0

By:

Cai, Wesley L.;
Greer, Celeste B.;
Chen, Jocelyn F.;
Arnal-Estapé, Anna;
Cao, Jian;
Yan, Qin;
Nguyen, Don X.

Publication type:

Article

Error-corrected sequencing strategies enable comprehensive detection of leukemic mutations relevant for diagnosis and minimal residual disease monitoring.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0671-8

By:

Crowgey, Erin L.;
Mahajan, Nitin;
Wong, Wing Hing;
Gopalakrishnapillai, Anilkumar;
Barwe, Sonali P.;
Kolb, E. Anders;
Druley, Todd E.

Publication type:

Article

4q27 deletion and 7q36.1 microduplication in a patient with multiple malformations and hearing loss: a case report.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0697-y

By:

Wu, Maolan;
Zheng, Xiangrong;
Wang, Xia;
Zhang, Guoyuan;
Kuang, Jian

Publication type:

Article

Discovering weaker genetic associations guided by known associations.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0667-4

By:

Wang, Haohan;
Vanyukov, Michael M.;
Xing, Eric P.;
Wu, Wei

Publication type:

Article

Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0660-y

By:

Altaf-Ul-Amin, Md.;
Karim, Mohammad Bozlul;
Hu, Pingzhao;
ONO, Naoaki;
Kanaya, Shigehiko

Publication type:

Article

Impact of mutations in DNA methylation modification genes on genome-wide methylation landscapes and downstream gene activations in pan-cancer.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0659-4

By:

Lee, Chai-Jin;
Ahn, Hongryul;
Jeong, Dabin;
Pak, Minwoo;
Moon, Ji Hwan;
Kim, Sun

Publication type:

Article

DeepTRIAGE: interpretable and individualised biomarker scores using attention mechanism for the classification of breast cancer sub-types.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-020-0658-5

By:

Beykikhoshk, Adham;
Quinn, Thomas P.;
Lee, Samuel C.;
Tran, Truyen;
Venkatesh, Svetha

Publication type:

Article

Hierarchical structural component model for pathway analysis of common variants.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-019-0650-0

By:

Jiang, Nan;
Lee, Sungyoung;
Park, Taesung

Publication type:

Article

neoANT-HILL: an integrated tool for identification of potential neoantigens.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0694-1

By:

Coelho, Ana Carolina M. F.;
Fonseca, André L.;
Martins, Danilo L.;
Lins, Paulo B. R.;
da Cunha, Lucas M.;
de Souza, Sandro J.

Publication type:

Article

Effects of ordered mutations on dynamics in signaling networks.

Published in:

BMC Medical Genomics, 2020, v. 13, p. 1, doi. 10.1186/s12920-019-0651-z

By:

Mazaya, Maulida;
Trinh, Hung-Cuong;
Kwon, Yung-Keun

Publication type:

Article

Exploring and analysing single cell multi-omics data with VDJView.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0696-z

By:

Samir, Jerome;
Rizzetto, Simone;
Gupta, Money;
Luciani, Fabio

Publication type:

Article

The cox-filter method identifies respective subtype-specific lncRNA prognostic signatures for two human cancers.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0691-4

By:

Tian, Suyan;
Wang, Chi;
Zhang, Jing;
Yu, Dan

Publication type:

Article

Pathway mapping of leukocyte transcriptome in influenza patients reveals distinct pathogenic mechanisms associated with progression to severe infection.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0672-7

By:

Zerbib, Yoann;
Jenkins, Emily K.;
Shojaei, Maryam;
Meyers, Adrienne F. A.;
Ho, John;
Ball, T. Blake;
Keynan, Yoav;
Pisipati, Amarnath;
Kumar, Aseem;
Kumar, Anand;
Nalos, Marek;
Tang, Benjamin M.;
Schughart, Klaus;
McLean, Anthony

Publication type:

Article

Bioinformatics analyses on the immune status of renal transplant patients, a systemic research of renal transplantation.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0673-6

By:

Meng, Mei;
Zhang, Weitao;
Tang, Qunye;
Yu, Baixue;
Li, Tingting;
Rong, Ruiming;
Zhu, Tongyu;
Xu, Ming;
Shi, Yi

Publication type:

Article

Master and servant: LINC00152 – a STAT3-induced long noncoding RNA regulates STAT3 in a positive feedback in human multiple myeloma.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0692-3

By:

Binder, Stefanie;
Zipfel, Ivonne;
Friedrich, Maik;
Riedel, Diana;
Ende, Stefanie;
Kämpf, Christoph;
Wiedemann, Karolin;
Buschmann, Tilo;
Puppel, Sven-Holger;
Reiche, Kristin;
Stadler, Peter F.;
Horn, Friedemann

Publication type:

Article

Six years' experience with LipidSeq: clinical and research learnings from a hybrid, targeted sequencing panel for dyslipidemias.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0669-2

By:

Dron, Jacqueline S.;
Wang, Jian;
McIntyre, Adam D.;
Iacocca, Michael A.;
Robinson, John F.;
Ban, Matthew R.;
Cao, Henian;
Hegele, Robert A.

Publication type:

Article

Germline variants in DNA repair genes associated with hereditary breast and ovarian cancer syndrome: analysis of a 21 gene panel in the Brazilian population.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-019-0652-y

By:

da Costa e Silva Carvalho, Simone;
Cury, Nathalia Moreno;
Brotto, Danielle Barbosa;
de Araujo, Luiza Ferreira;
Rosa, Reginaldo Cruz Alves;
Texeira, Lorena Alves;
Plaça, Jessica Rodrigues;
Marques, Adriana Aparecida;
Peronni, Kamila Chagas;
Ruy, Patricia de Cássia;
Molfetta, Greice Andreotti;
Moriguti, Julio Cesar;
Carraro, Dirce Maria;
Palmero, Edenir Inêz;
Ashton-Prolla, Patricia;
de Faria Ferraz, Victor Evangelista;
Silva Jr, Wilson Araujo

Publication type:

Article

Amniotic fluid cell-free transcriptome: a glimpse into fetal development and placental cellular dynamics during normal pregnancy.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0690-5

By:

Tarca, Adi L.;
Romero, Roberto;
Pique-Regi, Roger;
Pacora, Percy;
Done, Bogdan;
Kacerovsky, Marian;
Bhatti, Gaurav;
Jaiman, Sunil;
Hassan, Sonia S.;
Hsu, Chaur-Dong;
Gomez-Lopez, Nardhy

Publication type:

Article

AMLVaran: a software approach to implement variant analysis of targeted NGS sequencing data in an oncological care setting.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0668-3

By:

Wünsch, Christian;
Banck, Henrik;
Müller-Tidow, Carsten;
Dugas, Martin

Publication type:

Article

Comparison of DNA methylation profiles from saliva in Coeliac disease and non-coeliac disease individuals.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0670-9

By:

Hearn, Nerissa L.;
Chiu, Christine L.;
Lind, Joanne M.

Publication type:

Article

Genomic profiles and transcriptomic microenvironments in 2 patients with synchronous lung adenocarcinoma and lung squamous cell carcinoma: a case report.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0663-8

By:

Wu, Licheng;
Kang, Poming;
Tao, Shaolin;
Zhao, Zhikun;
Chen, Longyun;
Xiao, Yajie;
Tan, Qunyou

Publication type:

Article

Blood signatures for second stage human African trypanosomiasis: a transcriptomic approach.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0666-5

By:

Mulindwa, Julius;
Matovu, Enock;
Enyaru, John;
Clayton, Christine

Publication type:

Article

A case report of a mild form of multiple acyl-CoA dehydrogenase deficiency due to compound heterozygous mutations in the ETFA gene.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0665-6

By:

Chautard, Robin;
Laroche-Raynaud, Cécile;
Lia, Anne-Sophie;
Chazelas, Pauline;
Derouault, Paco;
Sturtz, Franck;
Baaj, Yasser;
Veauville-Merllié, Alice;
Acquaviva, Cécile;
Favreau, Frédéric;
Faye, Pierre-Antoine

Publication type:

Article

Quality of whole genome sequencing from blood versus saliva derived DNA in cardiac patients.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0664-7

By:

Yao, Roderick A.;
Akinrinade, Oyediran;
Chaix, Marie;
Mital, Seema

Publication type:

Article

HopPER: an adaptive model for probability estimation of influenza reassortment through host prediction.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-019-0656-7

By:

Yin, Rui;
Zhou, Xinrui;
Rashid, Shamima;
Kwoh, Chee Keong

Publication type:

Article

An integrated analysis of public genomic data unveils a possible functional mechanism of psoriasis risk via a long-range ERRFI1 enhancer.

Published in:

BMC Medical Genomics, 2020, v. 13, n. 1, p. 1, doi. 10.1186/s12920-020-0662-9

By:

Kubota, Naoto;
Suyama, Mikita

Publication type:

Article