Works in Molecular Ecology Resources, 2022, Vol 22, Issue 4

Results: 31

ModEst: Accurate estimation of genome size from next generation sequencing data.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1454, doi. 10.1111/1755-0998.13570

By:

Pfenninger, Markus;
Schönnenbeck, Philipp;
Schell, Tilman

Publication type:

Article

Labile sex chromosomes in the Australian freshwater fish family Percichthyidae.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1639, doi. 10.1111/1755-0998.13569

By:

Pavlova, Alexandra;
Harrisson, Katherine A.;
Turakulov, Rustam;
Lee, Yin Peng;
Ingram, Brett A.;
Gilligan, Dean;
Sunnucks, Paul;
Gan, Han Ming

Publication type:

Article

Fish eDNA metabarcoding from aquatic biofilm samples: Methodological aspects.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1440, doi. 10.1111/1755-0998.13568

By:

Rivera, Sinziana F.;
Rimet, Frédéric;
Vasselon, Valentin;
Vautier, Marine;
Domaizon, Isabelle;
Bouchez, Agnès

Publication type:

Article

DiversityScanner: Robotic handling of small invertebrates with machine learning methods.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1626, doi. 10.1111/1755-0998.13567

By:

Wührl, Lorenz;
Pylatiuk, Christian;
Giersch, Matthias;
Lapp, Florian;
von Rintelen, Thomas;
Balke, Michael;
Schmidt, Stefan;
Cerretti, Pierfilippo;
Meier, Rudolf

Publication type:

Article

Tools and applications for integrative analysis of DNA methylation in social insects.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1656, doi. 10.1111/1755-0998.13566

By:

Morandin, Claire;
Brendel, Volker P.

Publication type:

Article

Reference genome of lumpfish Cyclopterus lumpus Linnaeus provides evidence of male heterogametic sex determination through the AMH pathway.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1427, doi. 10.1111/1755-0998.13565

By:

Holborn, Melissa K.;
Einfeldt, Anthony L.;
Kess, Tony;
Duffy, Steve J.;
Messmer, Amber M.;
Langille, Barbara L.;
Brachmann, Matthew K.;
Gauthier, Johanne;
Bentzen, Paul;
Knutsen, Tim Martin;
Kent, Matthew;
Boyce, Danny;
Bradbury, Ian R.

Publication type:

Article

A chromosome‐level genome of Portunus trituberculatus provides insights into its evolution, salinity adaptation and sex determination.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1606, doi. 10.1111/1755-0998.13564

By:

Lv, Jianjian;
Li, Ronghua;
Su, Zhencheng;
Gao, Baoquan;
Ti, Xingbin;
Yan, Deping;
Liu, Guangjian;
Liu, Ping;
Wang, Chunlin;
Li, Jian

Publication type:

Article

Chromosome‐level genome assembly of the Chinese three‐keeled pond turtle (Mauremys reevesii) provides insights into freshwater adaptation.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1596, doi. 10.1111/1755-0998.13563

By:

Liu, Jianjun;
Liu, Siqi;
Zheng, Kai;
Tang, Min;
Gu, Liping;
Young, James;
Wang, Ziming;
Qiu, Yeyan;
Dong, Jinxiu;
Gu, Shengli;
Xiong, Lei;
Zhou, Ruanbao;
Nie, Liuwang

Publication type:

Article

Chromosome‐level de novo genome assembly and whole‐genome resequencing of the threatened species Acanthochlamys bracteata (Velloziaceae) provide insights into alpine plant divergence in a biodiversity hotspot.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1582, doi. 10.1111/1755-0998.13562

By:

Xu, Bo;
Liao, Min;
Deng, Heng‐ning;
Yan, Chao‐chao;
Lv, Yun‐yun;
Gao, Yun‐dong;
Ju, Wen‐bin;
Zhang, Jun‐yi;
Jiang, Li‐sha;
Li, Xiong;
Gao, Xin‐fen

Publication type:

Article

Phylogenomic analyses of the genus Drosophila reveals genomic signals of climate adaptation.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1559, doi. 10.1111/1755-0998.13561

By:

Li, Fang;
Rane, Rahul V.;
Luria, Victor;
Xiong, Zijun;
Chen, Jiawei;
Li, Zimai;
Catullo, Renee A.;
Griffin, Philippa C.;
Schiffer, Michele;
Pearce, Stephen;
Lee, Siu Fai;
McElroy, Kerensa;
Stocker, Ann;
Shirriffs, Jennifer;
Cockerell, Fiona;
Coppin, Chris;
Sgrò, Carla M.;
Karger, Amir;
Cain, John W.;
Weber, Jessica A.

Publication type:

Article

A chromosomal level genome sequence for Quasipaa spinosa (Dicroglossidae) reveals chromosomal evolution and population diversity.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1545, doi. 10.1111/1755-0998.13560

By:

Hu, Xiaoxiao;
Jiang, Zeyuan;
Ming, Yao;
Jian, Jianbo;
Jiang, Sanjie;
Zhang, Dandan;
Zhang, Jiayong;
Zheng, Shanjian;
Fang, Xiaodong;
Yang, Yulan;
Zheng, Rongquan

Publication type:

Article

Sequence coverage required for accurate genotyping by sequencing in polyploid species.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1417, doi. 10.1111/1755-0998.13558

By:

Wang, Lin;
Yang, Jixuan;
Zhang, Hong;
Tao, Qin;
Zhang, Yuxin;
Dang, Zhenyu;
Zhang, Fengjun;
Luo, Zewei

Publication type:

Article

f‐Statistics estimation and admixture graph construction with Pool‐Seq or allele count data using the R package poolfstat.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1394, doi. 10.1111/1755-0998.13557

By:

Gautier, Mathieu;
Vitalis, Renaud;
Flori, Laurence;
Estoup, Arnaud

Publication type:

Article

An accurate assignment test for extremely low‐coverage whole‐genome sequence data.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1330, doi. 10.1111/1755-0998.13551

By:

Ferrari, Giada;
Atmore, Lane M.;
Jentoft, Sissel;
Jakobsen, Kjetill S.;
Makowiecki, Daniel;
Barrett, James H.;
Star, Bastiaan

Publication type:

Article

A rodent anchored hybrid enrichment probe set for a range of phylogenetic utility: From order to species.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1521, doi. 10.1111/1755-0998.13555

By:

Bangs, Max R.;
Steppan, Scott J.

Publication type:

Article

freqpcr: Estimation of population allele frequency using qPCR ΔΔCq measures from bulk samples.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1380, doi. 10.1111/1755-0998.13554

By:

Sudo, Masaaki;
Osakabe, Masahiro

Publication type:

Article

Inferring the timing and strength of natural selection and gene migration in the evolution of chicken from ancient DNA data.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1362, doi. 10.1111/1755-0998.13553

By:

Lyu, Wenyang;
Dai, Xiaoyang;
Beaumont, Mark;
Yu, Feng;
He, Zhangyi

Publication type:

Article

An efficient method for simultaneous species, individual, and sex identification via in‐solution single nucleotide polymorphism capture from low‐quality scat samples.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1345, doi. 10.1111/1755-0998.13552

By:

Parker, Lillian D.;
Campana, Michael G.;
Quinta, Jessica D.;
Cypher, Brian;
Rivera, Isabel;
Fleischer, Robert C.;
Ralls, Katherine;
Wilbert, Tammy R.;
Boarman, Ryan;
Boarman, William I.;
Maldonado, Jesús E.

Publication type:

Article

Chromosome‐level genome and population genomic analysis provide insights into the evolution and environmental adaptation of Jinjiang oyster Crassostrea ariakensis.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1529, doi. 10.1111/1755-0998.13556

By:

Wu, Biao;
Chen, Xi;
Yu, Mengjun;
Ren, Jianfeng;
Hu, Jie;
Shao, Changwei;
Zhou, Liqing;
Sun, Xiujun;
Yu, Tao;
Zheng, Yanxin;
Wang, Yan;
Wang, Zhenyuan;
Zhang, He;
Fan, Guangyi;
Liu, Zhihong

Publication type:

Article

Long‐read assembly of the Chinese indigenous Ningxiang pig genome and identification of genetic variations in fat metabolism among different breeds.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1508, doi. 10.1111/1755-0998.13550

By:

Ma, Haiming;
Jiang, Juan;
He, Jun;
Liu, Huifang;
Han, Lingling;
Gong, Yan;
Li, Biao;
Yu, Zonggang;
Tang, Shengguo;
Zhang, Yuebo;
Duan, Yehui;
Yin, Yulong;
Zeng, Qinghua;
Yi, Jiacheng;
He, Xinglong;
Zeng, Yongbo;
Kim, Kung Seok;
Xu, Kang;
Liang, Fan;
He, Jianhua

Publication type:

Article

Time to get real with qPCR controls: The frequency of sample contamination and the informative power of negative controls in environmental DNA studies.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1319, doi. 10.1111/1755-0998.13549

By:

Hutchins, Patrick R.;
Simantel, Leah N.;
Sepulveda, Adam J.

Publication type:

Article

High‐throughput sequencing of faeces provides evidence for dispersal of parasites and pathogens by migratory waterbirds.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1303, doi. 10.1111/1755-0998.13548

By:

Briscoe, Andrew G.;
Nichols, Sarah;
Hartikainen, Hanna;
Knipe, Hazel;
Foster, Rachel;
Green, Andy J.;
Okamura, Beth;
Bass, David

Publication type:

Article

The first high‐quality chromosomal genome assembly of a medicinal and edible plant Arctium lappa.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1493, doi. 10.1111/1755-0998.13547

By:

Yang, Yanyun;
Li, Shengnan;
Xing, Yanping;
Zhang, Zhongren;
Liu, Tao;
Ao, Wuliji;
Bao, Guihua;
Zhan, Zhilai;
Zhao, Rong;
Zhang, Tingting;
Zhang, Dachuan;
Song, Yueyue;
Bian, Che;
Xu, Liang;
Kang, Tingguo

Publication type:

Article

Assessing candidate DNA barcodes for Chinese and internationally traded timber species.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1478, doi. 10.1111/1755-0998.13546

By:

Hu, Jian‐Lin;
Ci, Xiu‐Qin;
Liu, Zhi‐Fang;
Dormontt, Eleanor E.;
Conran, John G.;
Lowe, Andrew J.;
Li, Jie

Publication type:

Article

A high‐quality reference genome for Fraxinus pennsylvanica for ash species restoration and research.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1284, doi. 10.1111/1755-0998.13545

By:

Huff, Matt;
Seaman, Josiah;
Wu, Di;
Zhebentyayeva, Tetyana;
Kelly, Laura J.;
Faridi, Nurul;
Nelson, Charles D.;
Cooper, Endymion;
Best, Teodora;
Steiner, Kim;
Koch, Jennifer;
Romero Severson, Jeanne;
Carlson, John E.;
Buggs, Richard;
Staton, Margaret

Publication type:

Article

Characterizing the spatial signal of environmental DNA in river systems using a community ecology approach.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1274, doi. 10.1111/1755-0998.13544

By:

Cantera, Isabel;
Decotte, Jean‐Baptiste;
Dejean, Tony;
Murienne, Jérôme;
Vigouroux, Régis;
Valentini, Alice;
Brosse, Sébastien

Publication type:

Article

Efficiency of eDNA and iDNA in assessing vertebrate diversity and its abundance.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1262, doi. 10.1111/1755-0998.13543

By:

Carvalho, Carolina S.;
de Oliveira, Marina Elisa;
Rodriguez‐Castro, Karen Giselle;
Saranholi, Bruno H.;
Galetti, Pedro M.

Publication type:

Article

Invertebrate methylomes provide insight into mechanisms of environmental tolerance and reveal methodological biases.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1247, doi. 10.1111/1755-0998.13542

By:

Trigg, Shelly A.;
Venkataraman, Yaamini R.;
Gavery, Mackenzie R.;
Roberts, Steven B.;
Bhattacharya, Debashish;
Downey‐Wall, Alan;
Eirin‐Lopez, Jose M.;
Johnson, Kevin M.;
Lotterhos, Katie E.;
Puritz, Jonathan B.;
Putnam, Hollie M.

Publication type:

Article

Genome and gene evolution of seahorse species revealed by the chromosome‐level genome of Hippocampus abdominalis.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1465, doi. 10.1111/1755-0998.13541

By:

He, Libin;
Long, Xin;
Qi, Jianfei;
Wang, Zongji;
Huang, Zhen;
Wu, Shuiqing;
Zhang, Xingtan;
Luo, Huiyu;
Chen, Xinxin;
Lin, Jinbo;
Yang, Qiuhua;
Huang, Shiyu;
Zhou, Qi;
Zheng, Leyun

Publication type:

Article

Strategies for sample labelling and library preparation in DNA metabarcoding studies.

Published in:

Molecular Ecology Resources, 2022, v. 22, n. 4, p. 1231, doi. 10.1111/1755-0998.13512

By:

Bohmann, Kristine;
Elbrecht, Vasco;
Carøe, Christian;
Bista, Iliana;
Leese, Florian;
Bunce, Michael;
Yu, Douglas W.;
Seymour, Mathew;
Dumbrell, Alex J.;
Creer, Simon

Publication type:

Article

Cover Image.

Published in:: Molecular Ecology Resources, 2022, v. 22, n. 4, p. i, doi. 10.1111/1755-0998.13420
Publication type:: Article