Works matching IS 17520509 AND DT 2019 AND VI 13

Results: 40

Ultrafast clustering of single-cell flow cytometry data using FlowGrid.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0690-2

By:

Ye, Xiaoxin;
Ho, Joshua W. K.

Publication type:

Article

Mathematical modeling of movement on fitness landscapes.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-019-0704-0

By:

Gerald, Nishant;
Dutta, Dibyendu;
Brajesh, R. G.;
Saini, Supreet

Publication type:

Article

Correction to: A quantitative systems pharmacology (QSP) model for Pneumocystis treatment in mice.

Published in:

2019

By:

Liu, Guan-Sheng;
Ballweg, Richard;
Ashbaugh, Alan;
Zhang, Yin;
Facciolo, Joseph;
Cushion, Melanie T.;
Zhang, Tongli

Publication type:

Correction Notice

Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0697-8

By:

Xue, Hansheng;
Peng, Jiajie;
Shang, Xuequn

Publication type:

Article

Network-based characterization of drug-protein interaction signatures with a space-efficient approach.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0691-1

By:

Tabei, Yasuo;
Kotera, Masaaki;
Sawada, Ryusuke;
Yamanishi, Yoshihiro

Publication type:

Article

Correction to: circular RNA expression profiles during the differentiation of mouse neural stem cells.

Published in:

2019

By:

Yang, Qichang;
Wu, Jing;
Zhao, Jian;
Xu, Tianyi;
Zhao, Zhongming;
Song, Xiaofeng;
Han, Ping

Publication type:

Correction Notice

A fast and efficient count-based matrix factorization method for detecting cell types from single-cell RNAseq data.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0699-6

By:

Sun, Shiquan;
Chen, Yabo;
Liu, Yang;
Shang, Xuequn

Publication type:

Article

Anti-TNF- αtreatment-related pathways and biomarkers revealed by transcriptome analysis in Chinese psoriasis patients.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0698-7

By:

Liu, Lunfei;
Liu, Wenting;
Zheng, Yuxin;
Chen, Jisu;
Zhou, Jiong;
Dai, Huatuo;
Cai, Suiqing;
Liu, Jianjun;
Zheng, Min;
Ren, Yunqing

Publication type:

Article

Fusing gene expressions and transitive protein-protein interactions for inference of gene regulatory networks.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0695-x

By:

Liu, Wenting;
Rajapakse, Jagath C.

Publication type:

Article

FCMDAP: using miRNA family and cluster information to improve the prediction accuracy of disease related miRNAs.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0696-9

By:

Li, Xiaoying;
Lin, Yaping;
Gu, Changlong;
Yang, Jialiang

Publication type:

Article

Towards embedding Caco-2 model of gut interface in a microfluidic device to enable multi-organ models for systems biology.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0686-y

By:

Sakharov, Dmitry;
Maltseva, Diana;
Knyazev, Evgeny;
Nikulin, Sergey;
Poloznikov, Andrey;
Shilin, Sergey;
Tsypina, Irina;
Tonevitsky, Alexander;
Baranova, Ancha

Publication type:

Article

GNE: a deep learning framework for gene network inference by aggregating biological information.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0694-y

By:

KC, Kishan;
Li, Rui;
Cui, Feng;
Yu, Qi;
Haake, Anne R.

Publication type:

Article

Identification of Hürthle cell cancers: solving a clinical challenge with genomic sequencing and a trio of machine learning algorithms.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0693-z

By:

Hao, Yangyang;
Duh, Quan-Yang;
Kloos, Richard T.;
Babiarz, Joshua;
Harrell, R. Mack;
Traweek, S. Thomas;
Kim, Su Yeon;
Fedorowicz, Grazyna;
Walsh, P. Sean;
Sadow, Peter M.;
Huang, Jing;
Kennedy, Giulia C.

Publication type:

Article

Boolean network modeling of β-cell apoptosis and insulin resistance in type 2 diabetes mellitus.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0692-0

By:

Dutta, Pritha;
Ma, Lichun;
Ali, Yusuf;
Sloot, Peter M.A.;
Zheng, Jie

Publication type:

Article

Computational modelling of energy balance in individuals with Metabolic Syndrome.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-019-0705-z

By:

Rozendaal, Yvonne J. W.;
Wang, Yanan;
Hilbers, Peter A. J.;
van Riel, Natal A. W.

Publication type:

Article

Systems biology research at BGRS-2018.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0685-z

By:

Orlov, Yuriy L.;
Hofestädt, Ralf;
Baranova, Ancha V.

Publication type:

Article

PMAMCA: prediction of microRNA-disease association utilizing a matrix completion approach.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-019-0700-4

By:

Ha, Jihwan;
Park, Sanghyun;
Park, Chihyun

Publication type:

Article

Adaptive information processing of network modules to dynamic and spatial stimuli.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-019-0703-1

By:

Krishnan, J.;
Floros, Ioannis

Publication type:

Article

How to schedule VEGF and PD-1 inhibitors in combination cancer therapy?

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. 1, doi. 10.1186/s12918-019-0706-y

By:

Xiulan Lai;
Friedman, Avner

Publication type:

Article

Correction to: Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone.

Published in:

2019

By:

de Anda-Jáuregui, Guillermo;
Guo, Kai;
McGregor, Brett A.;
Feldman, Eva L.;
Hur, Junguk

Publication type:

Correction Notice

LSM-W<sup>2</sup>: laser scanning microscopy worker for wheat leaf surface morphology.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0689-8

By:

Zubairova, Ulyana S.;
Verman, Pavel Yu.;
Doroshkov, Alexey V.;
Oshchepkova, Polina A.;
Elsukova, Alina S.

Publication type:

Article

Urine proteome changes associated with autonomic regulation of heart rate in cosmonauts.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0688-9

By:

Pastushkova, Lyudmila H.;
Rusanov, Vasily B.;
Goncharova, Anna G.;
Brzhozovskiy, Alexander G.;
Chernikova, Anna G.;
Kashirina, Daria N.;
Nosovsky, Andrey M.;
Baevsky, Roman M.;
Larina, Irina M.;
Kononikhin, Alexey S.;
Nikolaev, Evgeny N.

Publication type:

Article

Effects of unpaired 1 gene overexpression on the lifespan of Drosophila melanogaster.

Published in:

BMC Systems Biology, 2019, v. 13, p. N.PAG, doi. 10.1186/s12918-019-0687-x

By:

Moskalev, Alexey;
Proshkina, Ekaterina;
Shaposhnikov, Mikhail;
Zhavoronkov, Alex

Publication type:

Article

Correction to: miRNAs and target genes in the blood as biomarkers for the early diagnosis of Parkinson's disease.

Published in:

2019

By:

Liu, Xiaoting;
Chen, Jinhu;
Guan, Tianyuan;
Yao, Hui;
Zhang, Wenpei;
Guan, Zhenlong;
Wang, Yanqin

Publication type:

Correction Notice

In-silico comparison of two induction regimens (7 + 3 vs 7 + 3 plus additional bone marrow evaluation) in acute myeloid leukemia treatment.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-019-0684-0

By:

Görlich, Dennis;
Banck, Jan Christoph

Publication type:

Article

How to prevent viremia rebound? Evidence from a PRRSv data-supported model of immune response.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. 1, doi. 10.1186/s12918-018-0666-7

By:

Go, Natacha;
Touzeau, Suzanne;
Islam, Zeenath;
Belloc, Catherine;
Doeschl-Wilson, Andrea

Publication type:

Article

Correction to: MISC: missing imputation for single-cell RNA sequencing data.

Published in:

2019

By:

Yang, Mary Qu;
Weissman, Sherman M.;
Yang, William;
Zhang, Jialing;
Canaan, Allon;
Guan, Renchu

Publication type:

Correction Notice

A mathematical model of iron import and trafficking in wild-type and Mrs3/4ΔΔ yeast cells.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-019-0702-2

By:

Wofford, Joshua D.;
Lindahl, Paul A.

Publication type:

Article

A mathematical model to estimate cholesterylester transfer protein (CETP) triglycerides flux in human plasma.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-019-0679-x

By:

Jansen, Martin;
Puetz, Gerhard;
Hoffmann, Michael M.;
Winkler, Karl

Publication type:

Article

Use of genome-scale models to get new insights into the marine actinomycete genus Salinispora.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-019-0683-1

By:

Contador, Carolina A.;
Rodríguez, Vida;
Andrews, Barbara A.;
Asenjo, Juan A.

Publication type:

Article

miRNAs and target genes in the blood as biomarkers for the early diagnosis of Parkinson's disease.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-019-0680-4

By:

Liu, Xiaoting;
Chen, Jinhu;
Guan, Tianyuan;
Yao, Hui;
Zhang, Wenpei;
Guan, Zhenlong;
Wang, Yanqin

Publication type:

Article

Model-based virtual patient analysis of human liver regeneration predicts critical perioperative factors controlling the dynamic mode of response to resection.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. 1, doi. 10.1186/s12918-019-0678-y

By:

Verma, Babita K.;
Subramaniam, Pushpavanam;
Vadigepalli, Rajanikanth

Publication type:

Article

An agent-based model of the Notch signaling pathway elucidates three levels of complexity in the determination of developmental patterning.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0672-9

By:

Reynolds, Elaine R.;
Himmelwright, Ryan;
Sanginiti, Christopher;
Pfaffmann, Jeffrey O.

Publication type:

Article

Multi-omics integration reveals molecular networks and regulators of psoriasis.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0671-x

By:

Zhao, Yuqi;
Jhamb, Deepali;
Shu, Le;
Arneson, Douglas;
Rajpal, Deepak K.;
Yang, Xia

Publication type:

Article

Plasmodium vivax readiness to transmit: implication for malaria eradication.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0669-4

By:

Adapa, Swamy Rakesh;
Taylor, Rachel A.;
Wang, Chengqi;
Thomson-Luque, Richard;
Johnson, Leah R.;
Jiang, Rays H. Y.

Publication type:

Article

SLIMEr: probing flexibility of lipid metabolism in yeast with an improved constraint-based modeling framework.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0673-8

By:

Sánchez, Benjamín J.;
Li, Feiran;
Kerkhoven, Eduard J.;
Nielsen, Jens

Publication type:

Article

Constructing network topologies for multiple signal-encoding functions.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0676-5

By:

Wu, Lili;
Wang, Hongli;
Ouyang, Qi

Publication type:

Article

Pathway crosstalk perturbation network modeling for identification of connectivity changes induced by diabetic neuropathy and pioglitazone.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0674-7

By:

de Anda-Jáuregui, Guillermo;
Guo, Kai;
McGregor, Brett A.;
Feldman, Eva L.;
Hur, Junguk

Publication type:

Article

Modelling overflow metabolism in Escherichia coli with flux balance analysis incorporating differential proteomic efficiencies of energy pathways.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0677-4

By:

Zeng, Hong;
Yang, Aidong

Publication type:

Article

DynamicME: dynamic simulation and refinement of integrated models of metabolism and protein expression.

Published in:

BMC Systems Biology, 2019, v. 13, n. 1, p. 1, doi. 10.1186/s12918-018-0675-6

By:

Yang, Laurence;
Ebrahim, Ali;
Lloyd, Colton J.;
Saunders, Michael A.;
Palsson, Bernhard O.

Publication type:

Article