Works matching IS 17520509 AND DT 2018 AND VI 12 AND IP 1
Results: 57
Parameter estimation of qualitative biological regulatory networks on high performance computing hardware.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0670-y
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- Article
Mechanistic insight into activation of MAPK signaling by pro-angiogenic factors.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0668-5
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- Article
Qualitative modelling of the interplay of inflammatory status and butyrate in the human gut: a hypotheses about robust bi-stability.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0667-6
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- Article
Reframing gene essentiality in terms of adaptive flexibility.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0653-z
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Retraction Note: detangling PPI networks to uncover functionally meaningful clusters.
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- 2018
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- Correction Notice
Metabolic modeling and response surface analysis of an Escherichia coli strain engineered for shikimic acid production.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0632-4
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- Article
The anticancer mechanism investigation of Tanshinone II<sub>A</sub> by pharmacological clustering in protein network.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0606-6
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- Article
Sex differences in hepatic one-carbon metabolism.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0621-7
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- Article
Module-detection approaches for the integration of multilevel omics data highlight the comprehensive response of Aspergillus fumigatus to caspofungin.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0620-8
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- Article
Dynamic Optimization with Particle Swarms (DOPS): a meta-heuristic for parameter estimation in biochemical models.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0610-x
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- Article
Cellular network modeling and single cell gene expression analysis reveals novel hepatic stellate cell phenotypes controlling liver regeneration dynamics.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0605-7
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- Article
Multi-component gene network design as a survival strategy in diverse environments.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0609-3
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- Article
Escher-FBA: a web application for interactive flux balance analysis.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0607-5
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- Publication type:
- Article
The synthetic histone-binding regulator protein PcTF activates interferon genes in breast cancer cells.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0608-4
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- Article
An ensemble of mathematical models showing diauxic growth behaviour.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0604-8
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- Publication type:
- Article
Statistical relationship between metabolic decomposition and chemical uptake predicts bioconcentration factor data for diverse chemical exposures.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0601-y
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- Article
A systematic survey of centrality measures for protein-protein interaction networks.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0598-2
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- Article
Evaluating model reduction under parameter uncertainty.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0602-x
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- Article
Extracting proteins involved in disease progression using temporally connected networks.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0600-z
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- Article
A quantitative systems pharmacology (QSP) model for Pneumocystis treatment in mice.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0603-9
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- Article
High-fidelity discrete modeling of the HPA axis: a study of regulatory plasticity in biology.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0599-1
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- Article
Short linear motifs in intrinsically disordered regions modulate HOG signaling capacity.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0597-3
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- Article
RACIPE: a computational tool for modeling gene regulatory circuits using randomization.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0594-6
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- Article
How accurate is automated gap filling of metabolic models?
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0593-7
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- Article
DMPy: a Python package for automated mathematical model construction of large-scale metabolic systems.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0584-8
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- Article
Single molecules can operate as primitive biological sensors, switches and oscillators.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0596-4
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- Article
Dynamic elementary mode modelling of non-steady state flux data.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0589-3
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- Publication type:
- Article
Metabolic model-based analysis of the emergence of bacterial cross-feeding via extensive gene loss.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0588-4
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- Article
Principal process analysis of biological models.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0586-6
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- Article
Landscape reveals critical network structures for sharpening gene expression boundaries.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0595-5
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- Article
<italic>Escherichia coli</italic> B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0587-5
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- Article
A method for efficient Bayesian optimization of self-assembly systems from scattering data.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0592-8
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- Article
Simulating heterogeneous populations using Boolean models.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0591-9
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- Article
NUP155 insufficiency recalibrates a pluripotent transcriptome with network remodeling of a cardiogenic signaling module.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. 1, doi. 10.1186/s12918-018-0590-x
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- Article
Identification of reaction organization patterns that naturally cluster enzymatic transformations.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. 1, doi. 10.1186/s12918-018-0583-9
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- Article
Reconstruction of a genome-scale metabolic model for <italic>Actinobacillus succinogenes</italic> 130Z.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0585-7
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- Article
A computational framework for complex disease stratification from multiple large-scale datasets.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0556-z
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- Article
SCNS: a graphical tool for reconstructing executable regulatory networks from single-cell genomic data.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0581-y
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- Article
A powerful nonparametric method for detecting differentially co-expressed genes: distance correlation screening and edge-count test.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0582-x
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- Article
New perspectives: systems medicine in cardiovascular disease.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0579-5
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- Article
Evolution of computational models in BioModels Database and the Physiome Model Repository.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0553-2
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- Article
Putative human sperm Interactome: a networks study.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0578-6
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- Publication type:
- Article
Annotating activation/inhibition relationships to protein-protein interactions using gene ontology relations.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0535-4
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- Article
Regulation of dual specificity phosphatases in breast cancer during initial treatment with Herceptin: a Boolean model analysis.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0534-5
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- Article
Counting motifs in dynamic networks.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0533-6
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- Article
Predicting and understanding comprehensive drug-drug interactions via semi-nonnegative matrix factorization.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0532-7
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- Article
KDiamend: a package for detecting key drivers in a molecular ecological network of disease.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0531-8
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- Publication type:
- Article
Comparisons of gene coexpression network modules in breast cancer and ovarian cancer.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0530-9
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- Article
Composite mathematical modeling of calcium signaling behind neuronal cell death in Alzheimer's disease.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0529-2
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- Article
Discovery of Boolean metabolic networks: integer linear programming based approach.
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- BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0528-3
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- Article