Works matching IS 17520509 AND DT 2018 AND VI 12

Results: 146

A unified solution for different scenarios of predicting drug-target interactions via triple matrix factorization.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0663-x

By:

Shi, Jian-Yu;
Zhang, An-Qi;
Zhang, Shao-Wu;
Mao, Kui-Tao;
Yiu, Siu-Ming

Publication type:

Article

Integrating node embeddings and biological annotations for genes to predict disease-gene associations.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0662-y

By:

Ata, Sezin Kircali;
Ou-Yang, Le;
Fang, Yuan;
Kwoh, Chee-Keong;
Wu, Min;
Li, Xiao-Li

Publication type:

Article

Laplacian normalization and bi-random walks on heterogeneous networks for predicting lncRNA-disease associations.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0660-0

By:

Wen, Yaping;
Han, Guosheng;
Anh, Vo V.

Publication type:

Article

The emerging role of microRNA-4487/6845-3p in Alzheimer's disease pathologies is induced by Aβ25–35 triggered in SH-SY5Y cell.

Published in:

BMC Systems Biology, 2018, v. 12, n. 7, p. N.PAG, doi. 10.1186/s12918-018-0633-3

By:

Hu, Ling;
Zhang, Rong;
Yuan, Qiong;
Gao, Yinping;
Yang, Mary Q.;
Zhang, Chunxiang;
Huang, Jiankun;
Sun, Yufei;
Yang, William;
Yang, Jack Y.;
Min, Zhen-li;
Cheng, Jing;
Deng, Youping;
Hu, Xiamin

Publication type:

Article

Mechanistic insight into activation of MAPK signaling by pro-angiogenic factors.

Published in:

BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0668-5

By:

Song, Min;
Finley, Stacey D.

Publication type:

Article

Hot spot prediction in protein-protein interactions by an ensemble system.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0665-8

By:

Liu, Quanya;
Chen, Peng;
Wang, Bing;
Zhang, Jun;
Li, Jinyan

Publication type:

Article

FMSM: a novel computational model for predicting potential miRNA biomarkers for various human diseases.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0664-9

By:

Sun, Yiwen;
Zhu, Zexuan;
You, Zhu-Hong;
Zeng, Zijie;
Huang, Zhi-An;
Huang, Yu-An

Publication type:

Article

rPCMP: robust p-value combination by multiple partitions with applications to ATAC-seq data.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0661-z

By:

Cai, Menglan;
Li, Limin

Publication type:

Article

Comparative toxicogenomics of three insensitive munitions constituents 2,4-dinitroanisole, nitroguanidine and nitrotriazolone in the soil nematode Caenorhabditis elegans.

Published in:

BMC Systems Biology, 2018, v. 12, n. 7, p. N.PAG, doi. 10.1186/s12918-018-0636-0

By:

Gong, Ping;
Donohue, Keri B.;
Mayo, Anne M.;
Wang, Yuping;
Hong, Huixiao;
Wilbanks, Mitchell S.;
Barker, Natalie D.;
Guan, Xin;
Gust, Kurt A.

Publication type:

Article

MICRAT: a novel algorithm for inferring gene regulatory networks using time series gene expression data.

Published in:

BMC Systems Biology, 2018, v. 12, n. 7, p. N.PAG, doi. 10.1186/s12918-018-0635-1

By:

Yang, Bei;
Xu, Yaohui;
Maxwell, Andrew;
Koh, Wonryull;
Gong, Ping;
Zhang, Chaoyang

Publication type:

Article

scdNet: a computational tool for single-cell differential network analysis.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0652-0

By:

Chiu, Yu-Chiao;
Hsiao, Tzu-Hung;
Wang, Li-Ju;
Chen, Yidong;
Shao, Yu-Hsuan Joni

Publication type:

Article

Optimizing gene set annotations combining GO structure and gene expression data.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0659-6

By:

Wang, Dong;
Li, Jie;
Liu, Rui;
Wang, Yadong

Publication type:

Article

Computational drug repositioning using meta-path-based semantic network analysis.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0658-7

By:

Tian, Zhen;
Teng, Zhixia;
Cheng, Shuang;
Guo, Maozu

Publication type:

Article

Network-based logistic regression integration method for biomarker identification.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0657-8

By:

Zhang, Ke;
Geng, Wei;
Zhang, Shuqin

Publication type:

Article

Analysis of significant protein abundance from multiple reaction-monitoring data.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0656-9

By:

Jun, Jongsu;
Gim, Jungsoo;
Kim, Yongkang;
Kim, Hyunsoo;
Yu, Su Jong;
Yeo, Injun;
Park, Jiyoung;
Yoo, Jeong-Ju;
Cho, Young Youn;
Lee, Dong Hyeon;
Cho, Eun Ju;
Lee, Jeong-Hoon;
Kim, Yoon Jun;
Lee, Seungyeoun;
Yoon, Jung-Hwan;
Kim, Youngsoo;
Park, Taesung

Publication type:

Article

Identification of active signaling pathways by integrating gene expression and protein interaction data.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0655-x

By:

Kabir, Md Humayun;
Patrick, Ralph;
Ho, Joshua W. K.;
O'Connor, Michael D.

Publication type:

Article

Multi-CSAR: a multiple reference-based contig scaffolder using algebraic rearrangements.

Published in:

BMC Systems Biology, 2018, v. 12, n. 9, p. N.PAG, doi. 10.1186/s12918-018-0654-y

By:

Chen, Kun-Tze;
Shen, Hsin-Ting;
Lu, Chin Lung

Publication type:

Article

Parameter estimation of qualitative biological regulatory networks on high performance computing hardware.

Published in:

BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0670-y

By:

Saeed, Muhammad Tariq;
Ahmad, Jamil;
Baumbach, Jan;
Pauling, Josch;
Shafi, Aamir;
Paracha, Rehan Zafar;
Hayat, Asad;
Ali, Amjad

Publication type:

Article

MISC: missing imputation for single-cell RNA sequencing data.

Published in:

BMC Systems Biology, 2018, v. 12, n. 7, p. N.PAG, doi. 10.1186/s12918-018-0638-y

By:

Yang, Mary Qu;
Weissman, Sherman M.;
Yang, William;
Zhang, Jialing;
Canaann, Allon;
Guan, Renchu

Publication type:

Article

Increased AURKA promotes cell proliferation and predicts poor prognosis in bladder cancer.

Published in:

BMC Systems Biology, 2018, v. 12, n. 7, p. N.PAG, doi. 10.1186/s12918-018-0634-2

By:

Guo, Mengjie;
Lu, Sicheng;
Huang, Hongming;
Wang, Yaohui;
Yang, Mary Q.;
Yang, Ye;
Fan, Zhimin;
Jiang, Bin;
Deng, Youping

Publication type:

Article

Circular RNA expression profiles during the differentiation of mouse neural stem cells.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0651-1

By:

Yang, Qichang;
Wu, Jing;
Zhao, Jian;
Xu, Tianyi;
Zhao, Zhongming;
Song, Xiaofeng;
Han, Ping

Publication type:

Article

Identification of gene signatures from RNA-seq data using Pareto-optimal cluster algorithm.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0650-2

By:

Mallik, Saurav;
Zhao, Zhongming

Publication type:

Article

An experimental design framework for Markovian gene regulatory networks under stationary control policy.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0649-8

By:

Dehghannasiri, Roozbeh;
Shahrokh Esfahani, Mohammad;
Dougherty, Edward R.

Publication type:

Article

The International Conference on Intelligent Biology and Medicine (ICIBM) 2018: systems biology on diverse data types.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0648-9

By:

Wang, Kai;
Liu, Xiaoming;
Guo, Yan;
Wu, Zhijin;
Zhi, Degui;
Ruan, Jianhua;
Zhao, Zhongming

Publication type:

Article

Prediction of protein self-interactions using stacked long short-term memory from protein sequences information.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0647-x

By:

Wang, Yan-Bin;
You, Zhu-Hong;
Li, Xiao;
Jiang, Tong-Hai;
Cheng, Li;
Chen, Zhan-Heng

Publication type:

Article

Integrating proteomic and phosphoproteomic data for pathway analysis in breast cancer.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0646-y

By:

Ren, Jie;
Wang, Bo;
Li, Jing

Publication type:

Article

Classifying mild traumatic brain injuries with functional network analysis.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0645-z

By:

San Lucas, F. Anthony;
Redell, John;
Pramod, Dash;
Liu, Yin

Publication type:

Article

Metabolomics of mammalian brain reveals regional differences.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0644-0

By:

Choi, William T.;
Tosun, Mehmet;
Jeong, Hyun-Hwan;
Karakas, Cemal;
Semerci, Fatih;
Liu, Zhandong;
Maletić-Savatić, Mirjana

Publication type:

Article

Multiple transcription factors contribute to inter-chromosomal interaction in yeast.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0643-1

By:

Dai, Yulin;
Li, Chao;
Pei, Guangsheng;
Dong, Xiao;
Ding, Guohui;
Zhao, Zhongming;
Li, Yixue;
Jia, Peilin

Publication type:

Article

GSAE: an autoencoder with embedded gene-set nodes for genomics functional characterization.

Published in:

BMC Systems Biology, 2018, v. 12, n. 8, p. N.PAG, doi. 10.1186/s12918-018-0642-2

By:

Chen, Hung-I Harry;
Chiu, Yu-Chiao;
Zhang, Tinghe;
Zhang, Songyao;
Huang, Yufei;
Chen, Yidong

Publication type:

Article

Qualitative modelling of the interplay of inflammatory status and butyrate in the human gut: a hypotheses about robust bi-stability.

Published in:

BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0667-6

By:

Neumann, Gunter;
Wall, Rebecca;
Rangel, Ignacio;
Marques, Tatiana M.;
Repsilber, Dirk

Publication type:

Article

Reframing gene essentiality in terms of adaptive flexibility.

Published in:

BMC Systems Biology, 2018, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12918-018-0653-z

By:

Guzmán, Gabriela I.;
Olson, Connor A.;
Hefner, Ying;
Phaneuf, Patrick V.;
Catoiu, Edward;
Crepaldi, Lais B.;
Micas, Lucas Goldschmidt;
Palsson, Bernhard O.;
Feist, Adam M.

Publication type:

Article

A hotspots analysis-relation discovery representation model for revealing diabetes mellitus and obesity.

Published in:

BMC Systems Biology, 2018, v. 12, n. 7, p. N.PAG, doi. 10.1186/s12918-018-0640-4

By:

He, Guannan;
Liang, Yanchun;
Chen, Yan;
Yang, William;
Liu, Jun S.;
Yang, Mary Qu;
Guan, Renchu

Publication type:

Article

Co-expression of long non-coding RNAs and autism risk genes in the developing human brain.

Published in:

BMC Systems Biology, 2018, v. 12, n. 7, p. N.PAG, doi. 10.1186/s12918-018-0639-x

By:

Cogill, Steven B.;
Srivastava, Anand K.;
Yang, Mary Qu;
Wang, Liangjiang

Publication type:

Article

Novel EM based ML Kalman estimation framework for superresolution of stochastic three-states microtubule signal.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0631-5

By:

Menon, Vineetha;
Yarahmadian, Shantia;
Rezania, Vahid

Publication type:

Article

Systems biology analysis reveals new insights into invasive lung cancer.

Published in:

BMC Systems Biology, 2018, v. 12, n. 7, p. N.PAG, doi. 10.1186/s12918-018-0637-z

By:

Li, Dan;
Yang, William;
Arthur, Carolyn;
Liu, Jun S.;
Cruz-Niera, Carolina;
Yang, Mary Qu

Publication type:

Article

A multiple kernel density clustering algorithm for incomplete datasets in bioinformatics.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0630-6

By:

Liao, Longlong;
Li, Kenli;
Li, Keqin;
Yang, Canqun;
Tian, Qi

Publication type:

Article

Instantaneous mutation rate in cancer initiation and progression.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0629-z

By:

Sun, Shuhao;
Klebaner, Fima;
Zhang, Xinan;
Tian, Tianhai

Publication type:

Article

Large-scale prediction of protein ubiquitination sites using a multimodal deep architecture.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0628-0

By:

He, Fei;
Wang, Rui;
Li, Jiagen;
Bao, Lingling;
Xu, Dong;
Zhao, Xiaowei

Publication type:

Article

Modeling antibiotic resistance in the microbiota using multi-level Petri Nets.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0627-1

By:

Bardini, Roberta;
Di Carlo, Stefano;
Politano, Gianfranco;
Benso, Alfredo

Publication type:

Article

A multi-context learning approach for EEG epileptic seizure detection.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0626-2

By:

Yuan, Ye;
Xun, Guangxu;
Jia, Kebin;
Zhang, Aidong

Publication type:

Article

Ultraviolet (IUV) and mass spectrometry (IMS) imaging for the deconvolution of microbial interactions.

Published in:

BMC Systems Biology, 2018, v. 12, n. 5, p. N.PAG, doi. 10.1186/s12918-018-0617-3

By:

González-Menéndez, Víctor;
Martínez, Germán;
Serrano, Rachel;
Muñoz, Francisca;
Martín, Jesús;
Genilloud, Olga;
Tormo, José R.

Publication type:

Article

Recognition of bacteria named entity using conditional random fields in Spark.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0625-3

By:

Wang, Xiaoyan;
Li, Yichuan;
He, Tingting;
Jiang, Xingpeng;
Hu, Xiaohua

Publication type:

Article

Inferring phenotypes from substance use via collaborative matrix completion.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0623-5

By:

Lu, Jin;
Sun, Jiangwen;
Wang, Xinyu;
Kranzler, Henry;
Gelernter, Joel;
Bi, Jinbo

Publication type:

Article

Quantifying the relative importance of experimental data points in parameter estimation.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0622-6

By:

Jeong, Jenny E.;
Qiu, Peng

Publication type:

Article

Improving the EFMs quality by augmenting their representativeness in LP methods.

Published in:

BMC Systems Biology, 2018, v. 12, n. 5, p. N.PAG, doi. 10.1186/s12918-018-0619-1

By:

Hidalgo, José F.;
Egea, Jose A.;
Guil, Francisco;
García, José M.

Publication type:

Article

On the reconstruction of the ancestral bacterial genomes in genus Mycobacterium and Brucella.

Published in:

BMC Systems Biology, 2018, v. 12, n. 5, p. N.PAG, doi. 10.1186/s12918-018-0618-2

By:

Guyeux, Christophe;
Al-Nuaimi, Bashar;
AlKindy, Bassam;
Couchot, Jean-François;
Salomon, Michel

Publication type:

Article

An interpretable boosting model to predict side effects of analgesics for osteoarthritis.

Published in:

BMC Systems Biology, 2018, v. 12, n. 6, p. N.PAG, doi. 10.1186/s12918-018-0624-4

By:

Liu, Liangliang;
Yu, Ying;
Fei, Zhihui;
Li, Min;
Wu, Fang-Xiang;
Li, Hong-Dong;
Pan, Yi;
Wang, Jianxin

Publication type:

Article

BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources.

Published in:

BMC Systems Biology, 2018, v. 12, n. 5, p. N.PAG, doi. 10.1186/s12918-018-0616-4

By:

Messina, Antonio;
Fiannaca, Antonino;
La Paglia, Laura;
La Rosa, Massimo;
Urso, Alfonso

Publication type:

Article

Pipeline design to identify key features and classify the chemotherapy response on lung cancer patients using large-scale genetic data.

Published in:

BMC Systems Biology, 2018, v. 12, n. 5, p. N.PAG, doi. 10.1186/s12918-018-0615-5

By:

Valdés, María Gabriela;
Galván-Femenía, Iván;
Ripoll, Vicent Ribas;
Duran, Xavier;
Yokota, Jun;
Gavaldà, Ricard;
Rafael-Palou, Xavier;
de Cid, Rafael

Publication type:

Article