Works matching IS 17520509 AND DT 2014 AND VI 8 AND IP 1

Results: 141

CBFA: phenotype prediction integrating metabolic models with constraints derived from experimental data

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 123, doi. 10.1186/s12918-014-0123-1

By:

Carreira, Rafael;
Evangelista, Pedro;
Maia, Paulo;
Vilaça, Paulo;
Pont, Marcellinus;
Tomb, Jean-François;
Rocha, Isabel;
Rocha, Miguel

Publication type:

Article

Automatic validation of computational models using pseudo-3D spatio-temporal model checking

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 124, doi. 10.1186/s12918-014-0124-0

By:

Pârvu, Ovidiu;
Gilbert, David

Publication type:

Article

Integrative network analysis of TCGA data for ovarian cancer.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0136-9

By:

Qingyang Zhang;
Burdette, Joanna E.;
Ji-Ping Wang

Publication type:

Article

Dynamic estimation of specific fluxes in metabolic networks using non-linear dynamic optimization.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 132, doi. 10.1186/s12918-014-0132-0

By:

Vercammen, Dominique;
Logist, Filip;
Van Impe, Jan

Publication type:

Article

Annual Acknowledgement of Reviewers.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 11, doi. 10.1186/1752-0509-8-11

By:

Sands, Timothy R

Publication type:

Article

Retraction Note: Predicting new molecular targets for rhein using network pharmacology

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 105, doi. 10.1186/s12918-014-0105-3

By:

Aihua Zhang;
Hui Sun;
Bo Yang;
Xijun Wang

Publication type:

Article

Validation of an FBA model for Pichia pastoris in chemostat cultures.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 201, doi. 10.1186/s12918-014-0142-y

By:

Morales, Yeimy;
Tortajada, Marta;
Picó, Jesús;
Vehí, Josep;
Llaneras, Francisco

Publication type:

Article

Insights from systems pharmacology into cardiovascular drug discovery and therapy.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 175, doi. 10.1186/s12918-014-0141-z

By:

Peng Li;
Yingxue Fu;
Jinlong Ru;
Chao Huang;
Jiangfeng Du;
Chunli Zheng;
Xuetong Chen;
Pidong Li;
Aiping Lu;
Ling Yang;
Yonghua Wang

Publication type:

Article

Multilevel modeling and value of information in clinical trial decision support.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 157, doi. 10.1186/s12918-014-0140-0

By:

Yuanyuan Cui;
Murphy, Brendan;
Gentilcore, Anastasia;
Sharma, Yugal;
Minasian, Lori;
Kramer, Barnett S.;
Coates, Paul M.;
Gohagan, John K.;
Klenk, Juergen;
Tidor, Bruce

Publication type:

Article

Invariance and plasticity in the Drosophila melanogaster metabolomic network in response to temperature.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 134, doi. 10.1186/s12918-014-0139-6

By:

Hariharan, Ramkumar;
Hoffman, Jessica M.;
Thomas, Ariel S.;
Soltow, Quinlyn A.;
Jones, Dean P.;
Promislow, Daniel E. L.

Publication type:

Article

Modelling chemotherapy effects on granulopoiesis.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 96, doi. 10.1186/s12918-014-0138-7

By:

Schirm, Sibylle;
Engel, Christoph;
Loeffler, Markus;
Scholz, Markus

Publication type:

Article

Distinct metabolic responses of an ovarian cancer stem cell line.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 70, doi. 10.1186/s12918-014-0134-y

By:

Vermeersch, Kathleen A.;
Lijuan Wang;
McDonald, John F.;
Styczynski, Mark P.

Publication type:

Article

Hierarchy of non-glucose sugars in Escherichia coli.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 44, doi. 10.1186/s12918-014-0133-z

By:

Aidelberg, Guy;
Towbin, Benjamin D.;
Rothschild, Daphna;
Dekel, Erez;
Bren, Anat;
Alon, Uri

Publication type:

Article

Spatial localization of the first and last enzymes effectively connects active metabolic pathways in bacteria.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 24, doi. 10.1186/s12918-014-0131-1

By:

Meyer, Pablo;
Cecchi, Guillermo;
Stolovitzky, Gustavo

Publication type:

Article

MetaNET - a web-accessible interactive platform for biological metabolic network analysis.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0130-2

By:

Narang, Pankaj;
Khan, Shawez;
Hemrom, Anmol Jaywant;
Lynn, Andrew Michael

Publication type:

Article

A Bayesian active learning strategy for sequential experimental design in systems biology.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. N.PAG, doi. 10.1186/s12918-014-0102-6

By:

Pauwels, Edouard;
Lajaunie, Christian;
Vert, Jean-Philippe

Publication type:

Article

Space-induced bifurcation in repression-based transcriptional circuits.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 125, doi. 10.1186/s12918-014-0125-z

By:

Lo Van, Amanda;
Soula, Hedi A.;
Berry, Hugues

Publication type:

Article

Photo-sensitive degron variants for tuning protein stability by light.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0128-9

By:

Usherenko, Svetlana;
Stibbe, Hilke;
Muscò, Massimiliano;
Essen, Lars-Oliver;
Kostina, Ekaterina A;
Taxis, Christof

Publication type:

Article

Topology analysis and visualization of Potyvirus protein-protein interaction network

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 129, doi. 10.1186/s12918-014-0129-8

By:

Bosque, Gabriel;
Folch-Fortuny, Abel;
Picó, Jesús;
Ferrer, Alberto;
Elena, Santiago F

Publication type:

Article

Sexually-dimorphic targeting of functionally-related genes in COPD.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 118, doi. 10.1186/s12918-014-0118-y

By:

Glass, Kimberly;
Quackenbush, John;
Silverman, Edwin K;
Celli, Bartolome;
Rennard, Stephen I;
Guo-Cheng Yuan;
DeMeo, Dawn L

Publication type:

Article

Parameter estimation of dynamic biological network models using integrated fluxes.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 127, doi. 10.1186/s12918-014-0127-x

By:

Yang Liu;
Gunawan, Rudiyanto

Publication type:

Article

Stochastic parameter search for events.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 126, doi. 10.1186/s12918-014-0126-y

By:

Roh, Min K;
Eckhoff, Philip

Publication type:

Article

Evolution of context dependent regulation by expansion of feast/famine regulatory proteins.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 122, doi. 10.1186/s12918-014-0122-2

By:

Plaisier, Christopher L;
Fang-Yin Lo;
Ashworth, Justin;
Brooks, Aaron N;
Beer, Karlyn D;
Kaur, Amardeep;
Pan, Min;
Reiss, David J;
Facciotti, Marc T;
Baliga, Nitin S

Publication type:

Article

A method for inverse bifurcation of biochemical switches: inferring parameters from dose response curves.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 114, doi. 10.1186/s12918-014-0114-2

By:

Otero-Muras, Irene;
Yordanov, Pencho;
Stelling, Joerg

Publication type:

Article

Autoimmunity and tumor immunology: two facets of a probabilistic immune system.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 120, doi. 10.1186/s12918-014-0120-4

By:

Iranzo, Jaime;
Villoslada, Pablo

Publication type:

Article

Understanding disease mechanisms with models of signaling pathway activities.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0121-3

By:

Sebastian-Leon, Patricia;
Vidal, Enrique;
Minguez, Pablo;
Conesa, Ana;
Tarazona, Sonia;
Amadoz, Alicia;
Armero, Carmen;
Salavert, Francisco;
Vidal-Puig, Antonio;
Montaner, David;
Dopazo, Joaquín

Publication type:

Article

The role of TGF-β signaling and apoptosis in innate and adaptive immunity in zebrafish: a systems biology approach.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0116-0

By:

Che Lin;
Chin-Nan Lin;
Yu-Chao Wang;
Fang-Yu Liu;
Yung-Jen Chuang;
Chung-Yu Lan;
Wen-Ping Hsieh;
Bor-Sen Chen

Publication type:

Article

A computational platform to maintain and migrate manual functional annotations for BioCyc databases.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0115-1

By:

Walsh, Jesse R.;
Sen, Taner Z.;
Dickerson, Julie A.

Publication type:

Article

Computational modelling and analysis of the molecular network regulating sporulation initiation in Bacillus subtilis.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0119-x

By:

Ihekwaba, Adaoha E. C.;
Mura, Ivan;
Barker, Gary C.

Publication type:

Article

A curated C. difficile strain 630 metabolic network: prediction of essential targets and inhibitors.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0117-z

By:

Larocque, Mathieu;
Chénard, Thierry;
Najmanovich, Rafael

Publication type:

Article

Anti-inflammatory effects of reactive oxygen species – a multi-valued logical model validated by formal concept analysis.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 101, doi. 10.1186/s12918-014-0101-7

By:

Wollbold, Johannes;
Jaster, Robert;
Müller, Sarah;
Rateitschak, Katja;
Wolkenhauer, Olaf

Publication type:

Article

Integration of heterogeneous molecular networks to unravel gene-regulation in Mycobacterium tuberculosis.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 111, doi. 10.1186/s12918-014-0111-5

By:

van Dam, Jesse CJ;
Schaap, Peter J;
Martins dos Santos, Vitor AP;
Suárez-Diez, María

Publication type:

Article

Multicriteria global optimization for biocircuit design.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0113-3

By:

Otero-Muras, Irene;
Banga, Julio R.

Publication type:

Article

Autocrine FGF feedback can establish distinct states of Nanog expression in pluripotent stem cells: a computational analysis.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0112-4

By:

Lakatos, Dora;
Travis, Emily D.;
Pierson, Kelsey E.;
Vivian, Jay L.;
Czirok, Andras

Publication type:

Article

A systems approach identifies co-signaling molecules of early growth response 1 transcription factor in immobilization stress.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0100-8

By:

Papanikolaou, Nikolaos A.;
Tillinger, Andrej;
Xiaoping Liu;
Papavassiliou, Athanasios G.;
Sabban, Esther L.

Publication type:

Article

Reconstruction and modeling protein translocation and compartmentalization in Escherichia coli at the genome-scale.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0110-6

By:

Liu, Joanne K.;
O'Brien, Edward J.;
Lerman, Joshua A.;
Zengler, Karsten;
Palsson, Bernhard O.;
Feist, Adam M.

Publication type:

Article

Network signatures link hepatic effects of anti-diabetic interventions with systemic disease parameters.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0108-0

By:

Kelder, Thomas;
Verschuren, Lars;
van Ommen, Ben;
van Gool, Alain J.;
Radonjic, Marijana

Publication type:

Article

Finding trans-regulatory genes and protein complexes modulating meiotic recombination hotspots of human, mouse and yeast.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0107-1

By:

Min Wu;
Chee-Keong Kwoh;
Xiaoli Li;
Jie Zheng

Publication type:

Article

Membrane related dynamics and the formation of actin in cells growing on micro-topographies: a spatial computational model.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0106-2

By:

Bittig, Arne T.;
Matschegewski, Claudia;
Nebe, J. Barbara;
Stählke, Susanne;
Uhrmacher, Adelinde M.

Publication type:

Article

A Bayesian active learning strategy for sequential experimental design in systems biology.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0102-6

By:

Pauwels, Edouard;
Lajaunie, Christian;
Vert, Jean-Philippe

Publication type:

Article

<sup>13</sup>C metabolic flux analysis shows that resistin impairs the metabolic response to insulin in L6E9 myotubes.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0109-z

By:

Guzmán, Shirley;
Marin, Silvia;
Miranda, Anibal;
Selivanov, Vitaly A.;
Centelles, Josep J.;
Harmancey, Romain;
Smih, Fatima;
Turkieh, Annie;
Durocher, Yves;
Zorzano, Antonio;
Rouet, Philippe;
Cascante, Marta

Publication type:

Article

Multicriteria global optimization for biocircuit design.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0113-3

By:

Otero-Muras, Irene;
Banga, Julio R.

Publication type:

Article

KeyPathwayMiner 4.0: condition-specific pathway analysis by combining multiple omics studies and networks with Cytoscape.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0099-x

By:

Alcaraz, Nicolas;
Pauling, Josch;
Batra, Richa;
Barbosa, Eudes;
Junge, Alexander;
Christensen, Anne G. L.;
Azevedo, Vasco;
Ditzel, Henrik J.;
Baumbach, Jan

Publication type:

Article

KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0085-3

By:

Costa, Rafael S.;
Veríssimo, André;
Vinga, Susana

Publication type:

Article

Gene perturbation and intervention in context-sensitive stochastic Boolean networks.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/1752-0509-8-60

By:

Peican Zhu;
Jinghang Liang;
Jie Han

Publication type:

Article

BioModels linked dataset

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 91, doi. 10.1186/s12918-014-0091-5

By:

Wimalaratne, Sarala M;
Grenon, Pierre;
Hermjakob, Henning;
Novère, Nicolas Le;
Laibe, Camille

Publication type:

Article

Insight into model mechanisms through automatic parameter fitting: a new methodological framework for model development.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/1752-0509-8-59

By:

Tøndel, Kristin;
Niederer, Steven A.;
Land, Sander;
Smith, Nicolas P.

Publication type:

Article

Analysis of the quantitative balance between insulin-like growth factor (IGF)-1 ligand, receptor, and binding protein levels to predict cell sensitivity and therapeutic efficacy.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0098-y

By:

Dan Tian;
Kreeger, Pamela K.

Publication type:

Article

Pegasus: a comprehensive annotation and prediction tool for detection of driver gene fusions in cancer.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0097-z

By:

Abate, Francesco;
Zairis, Sakellarios;
Ficarra, Elisa;
Acquaviva, Andrea;
Wiggins, Chris H.;
Frattini, Veronique;
Lasorella, Anna;
Iavarone, Antonio;
Inghirami, Giorgio;
Rabadan, Raul

Publication type:

Article

Modeling the dependence of respiration and photosynthesis upon light, acetate, carbon dioxide, nitrate and ammonium in Chlamydomonas reinhardtii using design of experiments and multiple regression.

Published in:

BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0096-0

By:

Gérin, Stéphanie;
Mathy, Grégory;
Franck, Fabrice

Publication type:

Article