Works matching IS 17520509 AND DT 2013 AND VI 7 AND IP 1
Results: 141
(Im)Perfect robustness and adaptation of metabolic networks subject to metabolic and gene-expression regulation: marrying control engineering with metabolic control analysis.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-131
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RaTrav: a tool for calculating mean first-passage times on biochemical networks.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-130
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MC<sup>3</sup>: a steady-state model and constraint consistency checker for biochemical networks.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-129
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Rosen's (M,R) system in process algebra.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-128
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Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-127
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Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-126
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sybil - Efficient constraint-based modelling in R.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-125
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Dynamic modelling of microRNA regulation during mesenchymal stem cell differentiation.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-124
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Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-123
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Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-122
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Knowledge-based compact disease models identify new molecular players contributing to early-stage Alzheimer’s disease.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-121
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Transcription factors and genetic circuits orchestrating the complex, multilayered response of Clostridium acetobutylicum to butanol and butyrate stress.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-120
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Decision tree-based method for integrating gene expression, demographic, and clinical data to determine disease endotypes.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-119
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Identification of direction in gene networks from expression and methylation.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-118
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Merging concepts - coupling an agent-based model of hematopoietic stem cells with an ODE model of granulopoiesis.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-117
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Path2Models: large-scale generation of computational models from biochemical pathway maps.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 3, doi. 10.1186/1752-0509-7-116
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Translation of SBGN maps: Process Description to Activity Flow.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-115
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Solving gap metabolites and blocked reactions in genome-scale models: application to the metabolic network of Blattabacterium cuenoti.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-114
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Identification of regulatory structure and kinetic parameters of biochemical networks via mixedinteger dynamic optimization.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-113
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Characterization of regulatory features of housekeeping and tissue-specific regulators within tissue regulatory networks.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-112
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Joint estimation of causal effects from observational and intervention gene expression data.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-111
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A combinatorial approach of Proteomics and Systems Biology in unravelling the mechanisms of acute kidney injury (AKI): involvement of NMDA receptor GRIN1 in murine AKI.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-110
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Systematic design methodology for robust genetic transistors based on I/O specifications via promoter- RBS libraries.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-109
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A novel untargeted metabolomics correlation-based network analysis incorporating human metabolic reconstructions.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-107
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ENNET: inferring large gene regulatory networks from expression data using gradient boosting.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-106
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Construction of the influenza A virus infectioninduced cell-specific inflammatory regulatory network based on mutual information and optimization.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-105
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Energy metabolism and glutamate-glutamine cycle in the brain: a stoichiometric modeling perspective.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-103
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Antibacterial mechanisms identified through structural systems pharmacology.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-102
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Integrative genomics identifies candidate microRNAs for pathogenesis of experimental biliary atresia.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-104
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Automated design of bacterial genome sequences.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-108
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Walking the interactome to identify human miRNA-disease associations through the functional link between miRNA targets and disease genes.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-101
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NaviCell: a web-based environment for navigation, curation and maintenance of large molecular interaction maps.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-100
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Identifying reaction modules in metabolic pathways: bioinformatic deduction and experimental validation of a new putative route in purine catabolism.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-99
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Reconstruction of the experimentally supported human protein interactome: what can we learn?
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 2, doi. 10.1186/1752-0509-7-96
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A comprehensive map of the influenza A virus replication cycle.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-97
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An objective function exploiting suboptimal solutions in metabolic networks.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-98
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JunD/AP1 regulatory network analysis during macrophage activation in a rat model of crescentic glomerulonephritis.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-93
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Analysis of L-glutamic acid fermentation by using a dynamic metabolic simulation model of Escherichia coli.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-92
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Identification of parameter correlations for parameter estimation in dynamic biological models.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-91
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Global insights into energetic and metabolic networks in Rhodobacter sphaeroides.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-89
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An online model composition tool for system biology models.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-88
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Modularity and evolutionary constraints in a baculovirus gene regulatory network.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-87
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Identification of upstream regulators for prognostic expression signature genes in colorectal cancer.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-86
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Systems analysis reveals a transcriptional reversal of the mesenchymal phenotype induced by SNAIL-inhibitor GN-25.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-85
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Post-translational regulation enables robust p53 regulation.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-83
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A continuous-time adaptive particle filter for estimations under measurement time uncertainties with an application to a plasma-leucine mixed effects model.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-8
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New network topology approaches reveal differential correlation patterns in breast cancer.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-78
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Starch biosynthesis in cassava: a genome-based pathway reconstruction and its exploitation in data integration.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-75
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Reconstruction of large-scale regulatory networks based on perturbation graphs and transitive reduction: improved methods and their evaluation.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-73
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The development of a fully-integrated immune response model (FIRM) simulator of the immune response through integration of multiple subset models.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-95
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