Works matching IS 17520509 AND DT 2013 AND VI 7

Results: 217

International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-I1

By:

Eisenhaber, Frank;
Sung, Wing-Kin;
Wong, Limsoon

Publication type:

Article

International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions.

Published in:

2013

By:

Eisenhaber, Frank;
Wing-Kin Sung;
Limsoon Wong

Publication type:

Proceeding

Inferring protein domains associated with drug side effects based on drug-target interaction network.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S18

By:

Hiroaki Iwata;
Sayaka Mizutani;
Yasuo Tabei;
Masaaki Kotera;
Susumu Goto;
Yoshihiro Yamanishi

Publication type:

Article

Functional approach to high-throughput plant growth analysis.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S17

By:

Tessmer, Oliver L.;
Jiao, Yuhua;
Cruz, Jeffrey A.;
Kramer, David M.;
Jin Chen

Publication type:

Article

Active enhancer positions can be accurately predicted from chromatin marks and collective sequence motif data.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S16

By:

Podsiadło, Agnieszka;
Wrzesień, Mariusz;
Paja, Wiesław;
Rudnicki, Witold;
Wilczyński, Bartek

Publication type:

Article

Multivariate generalized multifactor dimensionality reduction to detect gene-gene interactions.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S15

By:

Jiin Choi;
Taesung Park

Publication type:

Article

PPSampler2: Predicting protein complexes more accurately and efficiently by sampling.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S14

By:

Chasanah Kusumastuti Widita;
Osamu Maruyama

Publication type:

Article

Inferring functional transcription factor-gene binding pairs by integrating transcription factor binding data with transcription factor knockout data.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S13

By:

Tzu-Hsien Yang;
Wei-Sheng Wu

Publication type:

Article

Missing value imputation for microarray data: a comprehensive comparison study and a web tool.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S12

By:

Chia-Chun Chiu;
Shih-Yao Chan;
Chung-Ching Wang;
Wei-Sheng Wu

Publication type:

Article

Shrinkage regression-based methods for microarray missing value imputation.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S11

By:

Hsiuying Wang;
Chia-Chun Chiu;
Yi-Ching Wu;
Wei-Sheng Wu

Publication type:

Article

CGPredictor: a systematic integrated analytic tool for mining and examining genome-scale cancer independent prognostic epigenetic marker panels.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S10

By:

Wan-Shu Cheng;
Jung-Hsien Chiang

Publication type:

Article

Identification of key regulators in glycogen utilization in E. coli based on the simulations from a hybrid functional Petri net model.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S1

By:

Zhongyuan Tian;
Fauré, Adrien;
Mori, Hirotada;
Hiroshi Matsuno

Publication type:

Article

iSVP: an integrated structural variant calling pipeline from high-throughput sequencing data.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S8

By:

Takahiro Mimori;
Naoki Nariai;
Kaname Kojima;
Mamoru Takahashi;
Akira Ono;
Yukuto Sato;
Yumi Yamaguchi-Kabata;
Masao Nagasaki

Publication type:

Article

OMACC: an Optical-Map-Assisted Contig Connector for improving de novo genome assembly.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S7

By:

Yi-Min Chen;
Chun-Hui Yu;
Chi-Chuan Hwang;
Tsunglin Liu

Publication type:

Article

Stringent DDI-based Prediction of H. sapiens-M. tuberculosis H37Rv Protein-Protein Interactions.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S6

By:

Hufeng Zhou;
Rezaei, Javad;
Willy Hugo;
Shangzhi Gao;
Jingjing Jin;
Mengyuan Fan;
Chern-Han Yong;
Wozniak, Michal;
Limsoon Wong

Publication type:

Article

Prediction of protein interaction types based on sequence and network features.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S5

By:

Goebels, Florian;
Frishman, Dmitrij

Publication type:

Article

An approach for dynamical network reconstruction of simple network motifs.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S4

By:

Masahiko Nakatsui;
Michihiro Araki;
Akihiko Kondo

Publication type:

Article

Scalable prediction of compound-protein interactions using minwise hashing.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S3

By:

Yasuo Tabei;
Yoshihiro Yamanishi

Publication type:

Article

KCF-S: KEGG Chemical Function and Substructure for improved interpretability and prediction in chemical bioinformatics.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S2

By:

Masaaki Kotera;
Yasuo Tabei;
Yoshihiro Yamanishi;
Yuki Moriya;
Toshiaki Tokimatsu;
Minoru Kanehisa;
Susumu Goto

Publication type:

Article

Relative impact of multi-layered genomic data on gene expression phenotypes in serous ovarian tumors.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S9

By:

Kyung-Ah Sohn;
Dokyoon Kim;
Jaehyun Lim;
Ju Han Kim

Publication type:

Article

PREAL: prediction of allergenic protein by maximum Relevance Minimum Redundancy (mRMR) feature selection.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S9

By:

Jing Wang;
Dabing Zhang;
Jing Li

Publication type:

Article

GeneTopics - interpretation of gene sets via literature-driven topic models.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S10

By:

Wang, Vicky;
Li Xi;
Enayetallah, Ahmed;
Fauman, Eric;
Ziemek, Daniel

Publication type:

Article

Novel alternative splicing isoform biomarkers identification from high-throughput plasma proteomics profiling of breast cancer.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S8

By:

Fan Zhang;
Mu Wang;
Michael, Tran;
Drabier, Renee

Publication type:

Article

Gene and isoform expression signatures associated with tumor stage in kidney renal clear cell carcinoma.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S7

By:

Qi Liu;
Shilin Zhao;
Pei-Fang Su;
Shyr Yu

Publication type:

Article

SAVI: a statistical algorithm for variant frequency identification.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S2-S2

By:

Trifonov, Vladimir;
Pasqualucci, Laura;
Tiacci, Enrico;
Falini, Brunangelo;
Rabadan, Raul

Publication type:

Article

Computational drug repositioning through heterogeneous network clustering.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S6

By:

Chao Wu;
Gudivada, Ranga C.;
Aronow, Bruce J.;
Jegga, Anil G.

Publication type:

Article

BRCA-Monet: a breast cancer specific drug treatment mode-of-action network for treatment effective prediction using large scale microarray database.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S5

By:

Chifeng Ma;
Hung-I Harry Chen;
Flores, Mario;
Yufei Huang;
Yidong Chen

Publication type:

Article

mAPC-GibbsOS: an integrated approach for robust identification of gene regulatory networks.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S4

By:

Xu Shi;
Jinghua Gu;
Xi Chen;
Shajahan, Ayesha;
Hilakivi-Clarke, Leena;
Clarke, Robert;
Jianhua Xuan

Publication type:

Article

A networks method for ranking microRNA dysregulation in cancer.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S3

By:

Budd, William T.;
Seashols, Sarah;
Weaver, Danielle;
Joseph, Cyriac;
Zehner, Zendra E.

Publication type:

Article

Dynamic protein interaction modules in human hepatocellular carcinoma progression.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S2

By:

Hui Yu;
Chen-Ching Lin;
Yuan-Yuan Li;
Zhongming Zhao

Publication type:

Article

Co-expression network analysis identifies Spleen Tyrosine Kinase (SYK) as a candidate oncogenic driver in a subset of small-cell lung cancer.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S5-S1

By:

Udyavar, Akshata R.;
Hoeksema, Megan D.;
Clark, Jonathan E.;
Yong Zou;
Zuojian Tang;
Zhiguo Li;
Ming Li;
Heidi Chen;
Statnikov, Alexander;
Yu Shyr;
Liebler, Daniel C.;
Field, John;
Eisenberg, Rosana;
Estrada, Lourdes;
Massion, Pierre P.;
Quaranta, Vito

Publication type:

Article

(Im)Perfect robustness and adaptation of metabolic networks subject to metabolic and gene-expression regulation: marrying control engineering with metabolic control analysis.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-131

By:

Fei He;
Fromion, Vincent;
Westerhoff, Hans V.

Publication type:

Article

RaTrav: a tool for calculating mean first-passage times on biochemical networks.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-130

By:

Torchala, Mieczyslaw;
Chelminiak, Przemyslaw;
Kurzynski, Michal;
Bates, Paul A.

Publication type:

Article

MC<sup>3</sup>: a steady-state model and constraint consistency checker for biochemical networks.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-129

By:

Yousofshahi, Mona;
Ullah, Ehsan;
Stern, Russell;
Hassoun, Soha

Publication type:

Article

Rosen's (M,R) system in process algebra.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-128

By:

Gatherer, Derek;
Galpin, Vashti

Publication type:

Article

Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-122

By:

Kening Li;
Zihui Li;
Ning Zhao;
Yaoqun Xu;
Yongjing Liu;
Yuanshuai Zhou;
Desi Shang;
Fujun Qiu;
Rui Zhang;
Zhiqiang Chang;
Yan Xu

Publication type:

Article

Network component analysis provides quantitative insights on an Arabidopsis transcription factor-gene regulatory network.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-126

By:

Misra, Ashish;
Sriram, Ganesh

Publication type:

Article

sybil - Efficient constraint-based modelling in R.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-125

By:

Gelius-Dietrich, Gabriel;
Desouki, Abdelmoneim Amer;
Fritzemeier, Claus Jonathan;
Lercher, Martin J.

Publication type:

Article

Dynamic modelling of microRNA regulation during mesenchymal stem cell differentiation.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-124

By:

Weber, Michael;
Sotoca, Ana M.;
Kupfer, Peter;
Guthke, Reinhard;
van Zoelen, Everardus J.

Publication type:

Article

Kinetic modelling of phospholipid synthesis in Plasmodium knowlesi unravels crucial steps and relative importance of multiple pathways.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-123

By:

Sen, Partho;
Vial, Henri J.;
Radulescu, Ovidiu

Publication type:

Article

Lessons from the modular organization of the transcriptional regulatory network of Bacillus subtilis.

Published in:

BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-127

By:

Freyre-González, Julio A.;
Manjarrez-Casas, Alejandra M.;
Merino, Enrique;
Martinez-Nuñez, Mario;
Perez-Rueda, Ernesto;
Gutiérrez-Ríos, Rosa-María

Publication type:

Article

Interaction network among functional drug groups.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S4

By:

Minho Lee;
Keunwan Park;
Dongsup Kim

Publication type:

Article

Role of genomic architecture in the expression dynamics of long noncoding RNAs during differentiation of human neuroblastoma cells.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S11

By:

Batagov, Arsen O.;
Yarmishyn, Aliaksandr A.;
Jenjaroenpun, Piroon;
Tan, Jovina Z.;
Yuichiro Nishida;
Kurochkin, Igor V.

Publication type:

Article

Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S10

By:

López, Yosvany;
Patil, Ashwini;
Nakai, Kenta

Publication type:

Article

InCoB2013 introduces Systems Biology as a major conference theme.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S1

By:

Schönbach, Christian;
Bairong Shen;
Tin Wee Tan;
Ranganathan, Shoba

Publication type:

Article

Identification of novel microRNA regulatory pathways associated with heterogeneous prostate cancer.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S6

By:

Yifei Tang;
Wenying Yan;
Jiajia Chen;
Cheng Luo;
Antti Kaipia;
Bairong Shen

Publication type:

Article

Analysis of intercellular signal transduction in the tumor microenvironment.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S5

By:

Haijun Gong

Publication type:

Article

Integrated analysis, transcriptome-lipidome, reveals the effects of INO-level (INO2 and INO4) on lipid metabolism in yeast.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S7

By:

Chumnanpuen, Pramote;
Nookaew, Intawat;
Nielsen, Jens

Publication type:

Article

Intra-relation reconstruction from inter-relation: miRNA to gene expression.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S8

By:

Dokyoon Kim;
Hyunjung Shin;
Je-Gun Joung;
Su-Yeon Lee;
Ju Han Kim

Publication type:

Article

Estimation of feasible solution space using Cluster Newton Method: application to pharmacokinetic analysis of irinotecan with physiologically-based pharmacokinetic models.

Published in:

BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S3-S3

By:

Kenta Yoshida;
Kazuya Maeda;
Hiroyuki Kusuhara;
Akihiko Konagaya

Publication type:

Article