Works matching IS 17520509 AND DT 2012 AND VI 6 AND IP 1
Results: 155
Predicting and characterizing selective multiple drug treatments for metabolic diseases and cancer.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-115
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TIGRESS: Trustful Inference of Gene REgulation using Stability Selection.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-145
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A multiscale approximation in a heat shock response model of E. coli.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-143
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VANTED v2: a framework for systems biology applications.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-139
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CellNOptR: a flexible toolkit to train protein signaling networks to data using multiple logic formalisms.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-133
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Gene regulatory network analysis supports inflammation as a key neurodegeneration process in prion disease.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-132
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Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRE.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-153
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Genome-level transcription data of Yersinia pestis analyzed with a New metabolic constraint-based approach.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-150
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Modeling and analysis of flux distributions in the two branches of the phosphotransferase system in Pseudomonas putida.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-149
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Integration of time-resolved transcriptomics data with flux-based methods reveals stress-induced metabolic adaptation in Escherichia coli.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-148
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The extended TILAR approach: a novel tool for dynamic modeling of the transcription factor network regulating the adaption to in vitro cultivation of murine hepatocytes.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-147
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A whole-body mathematical model of cholesterol metabolism and its age-associated dysregulation.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-130
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GraphAlignment: Bayesian pairwise alignment of biological networks.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-144
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Incremental parameter estimation of kinetic metabolic network models.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-142
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A model of estrogen-related gene expression reveals non-linear effects in transcriptional response to tamoxifen.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-138
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Functional clustering of time series gene expression data by Granger causality.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-137
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Compound stress response in stomatal closure: a mathematical model of ABA and ethylene interaction in guard cells.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-146
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A checkpoints capturing timing-robust Boolean model of the budding yeast cell cycle regulatory network.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-129
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A simple knowledge-based mining method for exploring hidden key molecules in a human biomolecular network.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-124
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System size reduction in stochastic simulations of the facilitated diffusion mechanism.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-121
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CardioNet: A human metabolic network suited for the study of cardiomyocyte metabolism.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-114
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A network perspective on metabolic inconsistency.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 1, doi. 10.1186/1752-0509-6-41
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Metabolic Flux-Based Modularity using Shortest Retroactive distances.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 155, doi. 10.1186/1752-0509-6-155
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Analysis of alternative signaling pathways of endoderm induction of human embryonic stem cells identifies context specific differences.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 154, doi. 10.1186/1752-0509-6-154
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Clarifying off-target effects for torcetrapib using network pharmacology and reverse docking approach.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 152, doi. 10.1186/1752-0509-6-152
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Similar temperature dependencies of glycolytic enzymes: an evolutionary adaptation to temperature dynamics?
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 151, doi. 10.1186/1752-0509-6-151
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Regulation of leukotriene and 5oxoETE synthesis and the effect of 5-lipoxygenase inhibitors: a mathematical modeling approach.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 141, doi. 10.1186/1752-0509-6-141
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A proof for loop-law constraints in stoichiometric metabolic networks.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 140, doi. 10.1186/1752-0509-6-140
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Robust synchronization control scheme of a population of nonlinear stochastic synthetic genetic oscillators under intrinsic and extrinsic molecular noise via quorum sensing.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 136, doi. 10.1186/1752-0509-6-136
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Gene autoregulation via intronic microRNAs and its functions.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 131, doi. 10.1186/1752-0509-6-131
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Protein stickiness, rather than number of functional protein-protein interactions, predicts expression noise and plasticity in yeast.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 128, doi. 10.1186/1752-0509-6-128
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A reconfigurable NAND/NOR genetic logic gate.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 126, doi. 10.1186/1752-0509-6-126
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Computational modeling of apoptotic signaling pathways induced by cisplatin.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 122, doi. 10.1186/1752-0509-6-122
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Network-based assessment of the selectivity of metabolic drug targets in Plasmodium falciparum with respect to human liver metabolism.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 118, doi. 10.1186/1752-0509-6-118
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Continuous time boolean modeling for biological signaling: application of Gillespie algorithm.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 116, doi. 10.1186/1752-0509-6-116
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Stochastic Boolean networks: An efficient approach to modeling gene regulatory networks.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 113, doi. 10.1186/1752-0509-6-113
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Topological effects of data incompleteness of gene regulatory networks.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 110, doi. 10.1186/1752-0509-6-110
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Designing optimal cell factories: integer programming couples elementary mode analysis with regulation.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 103, doi. 10.1186/1752-0509-6-103
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A variational approach to parameter estimation in ordinary differential equations.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 99, doi. 10.1186/1752-0509-6-99
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Bayesian model selection validates a biokinetic model for zirconium processing in humans.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 95, doi. 10.1186/1752-0509-6-95
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Condor-COPASI: high-throughput computing for biochemical networks.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 91, doi. 10.1186/1752-0509-6-91
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A higher-order numerical framework for stochastic simulation of chemical reaction systems.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 85, doi. 10.1186/1752-0509-6-85
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An investigation of spatial signal transduction in cellular networks.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 83, doi. 10.1186/1752-0509-6-83
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Efficient parametric analysis of the chemical master equation through model order reduction.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 81, doi. 10.1186/1752-0509-6-81
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Dynamic optimization of distributed biological systems using robust and efficient numerical techniques.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 79, doi. 10.1186/1752-0509-6-79
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Integrated pathway modules using time-course metabolic profiles and EST data from Milnesium tardigradum.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 72, doi. 10.1186/1752-0509-6-72
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Simultaneous learning of instantaneous and time-delayed genetic interactions using novel information theoretic scoring technique.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 62, doi. 10.1186/1752-0509-6-62
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Identifying targets of multiple co-regulating transcription factors from expression time-series by Bayesian model comparison.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 53, doi. 10.1186/1752-0509-6-53
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Inferring biochemical reaction pathways: the case of the gemcitabine pharmacokinetics.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 51, doi. 10.1186/1752-0509-6-51
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A specialized ODE integrator for the efficient computation of parameter sensitivities.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 46, doi. 10.1186/1752-0509-6-46
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