Works matching IS 17520509 AND DT 2011 AND VI 5

Results: 251

An integrated proteomics analysis of bone tissues in response to mechanical stimulation.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S7

By:

Jiliang Li;
Fan Zhang;
Chen, Jake Y.

Publication type:

Article

SNP-PRAGE: SNP-based parametric robust analysis of gene set enrichment.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S11

By:

Jaehoon Lee;
Soyeon Ahn;
Sohee Oh;
Bruce Weir;
Taesung Park

Publication type:

Article

SigCS base: an integrated genetic information resource for human cerebral stroke.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S10

By:

Young-Kyu Park;
Ok Sun Bang;
Min-Ho Cha;
Jaeheup Kim;
Cole, John W.;
Doheon Lee;
Young Joo Kim

Publication type:

Article

miR2Gene: pattern discovery of single gene, multiple genes, and pathways by enrichment analysis of their microRNA regulators.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S9

By:

Chengxiang Qiu;
Juan Wang;
Qinghua Cui

Publication type:

Article

Novel Markov model of induced pluripotency predicts gene expression changes in reprogramming.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S8

By:

Zhirui Hu;
Minping Qian;
Zhang, Michael Q.

Publication type:

Article

Bayesian parameter estimation for nonlinear modelling of biological pathways.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S9

By:

Ghasemi, Omid;
Lindsey, Merry L.;
Tianyi Yang;
Nguyen Nguyen;
Yufei Huang;
Yu-Fang Jin

Publication type:

Article

A transcriptional dynamic network during Arabidopsis thaliana pollen development.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S8

By:

Jigang Wang;
Xiaojie Qiu;
Yuhua Li;
Youping Deng;
Tieliu Shi

Publication type:

Article

Mass segmentation using a combined method for cancer detection.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S6

By:

Jun Liu;
Jianxun Chen;
Xiaoming Liu;
Lei Chun;
Jinshan Tang;
Youping Deng

Publication type:

Article

Biological network motif detection and evaluation.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S5

By:

Wooyoung Kim;
Min Li;
Jianxin Wang;
Yi Pan

Publication type:

Article

Combinatorial motif analysis of regulatory gene expression in Mafb deficient macrophages.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S7

By:

Mariko Morita;
Nakamura, Megumi;
Hamada, Michito;
Takahashi, Satoru

Publication type:

Article

An integrative analysis of DNA methylation and RNA-Seq data for human heart, kidney and liver.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S4

By:

Linglin Xie;
Weichel, Brent;
Ohm, Joyce Ellen;
Ke Zhang

Publication type:

Article

State Space Model with hidden variables for reconstruction of gene regulatory networks.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S3

By:

Xi Wu;
Peng Li;
Nan Wang;
Ping Gong;
Perkins, Edward J.;
Youping Deng;
Chaoyang Zhang

Publication type:

Article

Polytomy identification in microbial phylogenetic reconstruction.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S2

By:

Guan Ning Lin;
Chao Zhang;
Dong Xu

Publication type:

Article

Leveraging social networks for understanding the evolution of epidemics.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S14

By:

Martín, Gonzalo;
Marinescu, Maria-Cristina;
Singh, David E.;
Carretero, Jesús

Publication type:

Article

Kernelized partial least squares for feature reduction and classification of gene microarray data.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S13

By:

Land, Walker H.;
Xingye Qiao;
Margolis, Daniel E.;
Ford, William S.;
Paquette, Christopher T.;
Perez-Rogers, Joseph F.;
Borgia, Jeffrey A.;
Yang, Jack Y.;
Youping Deng

Publication type:

Article

A comprehensive network and pathway analysis of candidate genes in major depressive disorder.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S12

By:

Peilin Jia;
Chung-Feng Kao;
Po-Hsiu Kuo;
Zhongming Zhao

Publication type:

Article

Exploring virus relationships based on virus-host protein-protein interaction network.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S11

By:

Feng Xu;
Chen Zhao;
Yuhua Li;
Jiang Li;
Youping Deng;
Tieliu Shi

Publication type:

Article

Integration of breast cancer gene signatures based on graph centrality.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S10

By:

Jianxin Wang;
Gang Chen;
Min Li;
Yi Pan

Publication type:

Article

Statistical methods on detecting differentially expressed genes for RNA-seq data.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 3, p. 1, doi. 10.1186/1752-0509-5-S3-S1

By:

Zhongxue Chen;
Jianzhong Liu;
Hon Keung Tony Ng;
Saralees Nadarajah;
Kaufman, Howard L.;
Yang, Jack Y.;
Youping Deng

Publication type:

Article

From genes to networks: in systematic points of view.

Published in:

2011

By:

Ke Zhang;
Yunlong Liu;
Yang, Jack Y.;
Arabnia, Hamid R.;
Niemierko, Andrzej;
Ghafoor, Arif;
Weizhong Li;
Youping Deng

Publication type:

Proceeding

Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S15

By:

Xia, Li C.;
Steele, Joshua A.;
Cram, Jacob A.;
Cardon, Zoe G.;
Simmons, Sheri L.;
Vallino, Joseph J.;
Fuhrman, Jed A.;
Sun, Fengzhu

Publication type:

Article

Framework for network modularization and Bayesian network analysis to investigate the perturbed metabolic network.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S14

By:

Hyun Uk Kim;
Tae Yong Kim;
Sang Yup Lee

Publication type:

Article

A methodology for multivariate phenotype-based genome-wide association studies to mine pleiotropic genes.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S13

By:

Sung Hee Park;
Ji Young Lee;
Sangsoo Kim

Publication type:

Article

Drug-drug relationship based on target information: application to drug target identification.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S12

By:

Park, Keunwan;
Dongsup Kim

Publication type:

Article

Microarray test results should not be compensated for multiplicity of gene contents.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S6

By:

Tomokazu Konishi

Publication type:

Article

A high performance profile-biomarker diagnosis for mass spectral profiles.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S5

By:

Henry Han

Publication type:

Article

Exploring molecular links between lymph node invasion and cancer prognosis in human breast cancer.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S4

By:

Sangwoo Kim;
Hojung Nam;
Doheon Lee

Publication type:

Article

Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S3

By:

Xi Wang;
Xuegong Zhang

Publication type:

Article

Constructing a gene semantic similarity network for the inference of disease genes.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S2

By:

Rui Jiang;
Mingxin Gan;
Peng He

Publication type:

Article

Differentially co-expressed interacting protein pairs discriminate samples under distinct stages of HIV type 1 infection.

Published in:

BMC Systems Biology, 2011, v. 5, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-5-S2-S1

By:

Dukyong Yoon;
Hyosil Kim;
Haeyoung Suh-Kim;
Rae Woong Park;
Ki Young Lee

Publication type:

Article

Possible linkages between the inner and outer cellular states of human induced pluripotent stem cells.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S17

By:

Saito, Shigeru;
Onuma, Yasuko;
Ito, Yuzuru;
Tateno, Hiroaki;
Toyoda, Masashi;
Hidenori, Akutsu;
Nishino, Koichiro;
Chikazawa, Emi;
Fukawatase, Yoshihiro;
Miyagawa, Yoshitaka;
Okita, Hajime;
Kiyokawa, Nobutaka;
Shimma, Yohichi;
Umezawa, Akihiro;
Hirabayashi, Jun;
Horimoto, Katsuhisa;
Asashima, Makoto

Publication type:

Article

Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S16

By:

Huarong Zhou;
Shigeru Saito;
Guanying Piao;
Zhi-Ping Liu;
Jiguang Wang;
Horimoto, Katsuhisa;
Luonan Chen

Publication type:

Article

Multi-equilibrium property of metabolic networks: SSI module.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S15

By:

Hong-Bo Lei;
Ji-Feng Zhang;
Luonan Chen

Publication type:

Article

Modeling and analysis of the dynamic behavior of the XlnR regulon in Aspergillus niger.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S14

By:

Omony, Jimmy;
de Graaff, Leo H.;
van Straten, Gerrit;
van Boxtel, Anton J. B.

Publication type:

Article

A trigger model of apoptosis induced by tumor necrosis factor signaling.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S13

By:

Chang Gu;
Junjie Zhang;
Yingyu Chen;
Jinzhi Lei

Publication type:

Article

An improved kinetic model for the acetone-butanol-ethanol pathway of Clostridium acetobutylicum and model-based perturbation analysis.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S12

By:

Ru-Dong Li;
Yuan-Yuan Li;
Ling-Yi Lu;
Cong Ren;
Yi-Xue Li;
Lei Liu

Publication type:

Article

Two-stage flux balance analysis of metabolic networks for drug target identification.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S11

By:

Zhenping Li;
Rui-Sheng Wang;
Xiang-Sun Zhang

Publication type:

Article

Network target for screening synergistic drug combinations with application to traditional Chinese medicine.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S10

By:

Shao Li;
Bo Zhang;
Ningbo Zhang

Publication type:

Article

Integrating multiple types of data to predict novel cell cycle-related genes.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S9

By:

Lin Wang;
Lin Hou;
Minping Qian;
Fangting Li;
Minghua Deng

Publication type:

Article

Conditional random field approach to prediction of protein-protein interactions using domain information.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S8

By:

Morihiro Hayashida;
Kamada, Mayumi;
Jiangning Song;
Akutsu, Tatsuya

Publication type:

Article

MetaDBSite: a meta approach to improve protein DNA-binding sites prediction.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S7

By:

Jingna Si;
Zengming Zhang;
Biaoyang Lin;
Schroeder, Michael;
Bingding Huang

Publication type:

Article

Support vector machine prediction of enzyme function with conjoint triad feature and hierarchical context.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S6

By:

Yong-Cui Wang;
Yong Wang;
Zhi-Xia Yang;
Nai-Yang Deng

Publication type:

Article

DBAC: A simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S5

By:

Zhenhua Li;
Limsoon Wong;
Jinyan Li

Publication type:

Article

Regulatory link mapping between organisms.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S4

By:

Sharma, Rachita;
Evans, Patricia A.;
Bhavsar, Virendrakumar C.

Publication type:

Article

Functional pathway mapping analysis for hypoxia-inducible factors.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S3

By:

Chia-Sheng Chuang;
Tun-Wen Pai;
Chin-Hua Hu;
Wen-Shyong Tzou;
Dah-Tsyr Chang, Margaret;
Hao-Teng Chang;
Chih-Chia Chen

Publication type:

Article

Genome-wide analysis of the transcription factor binding preference of human bi-directional promoters and functional annotation of related gene pairs.

Published in:

BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S2

By:

Bingchuan Liu;
Jiajia Chen;
Bairong Shen

Publication type:

Article

Computational systems biology: integration of sequence, structure, network, and dynamics.

Published in:

2011

By:

Yong Wang;
Xiang-Sun Zhang;
Luonan Chen

Publication type:

Proceeding

Heterogeneity reduces sensitivity of cell death for TNF-Stimuli.

Published in:: BMC Systems Biology, 2011, v. 5, n. 1, p. 204, doi. 10.1186/1752-0509-5-204
Publication type:: Article

A chemokine gene expression signature derived from meta-analysis predicts the pathogenicity of viral respiratory infections.

Published in:: BMC Systems Biology, 2011, v. 5, n. 1, p. 202, doi. 10.1186/1752-0509-5-202
Publication type:: Article

DnaA and the timing of chromosome replication in Es-cherichia coli as a function of growth rate.

Published in:: BMC Systems Biology, 2011, v. 5, n. 1, p. 201, doi. 10.1186/1752-0509-5-201
Publication type:: Article