Works matching IS 17520509 AND DT 2010 AND VI 4

Results: 204

Validation of a constraint-based model of Pichia pastoris metabolism under data scarcity.

Published in:

BMC Systems Biology, 2010, v. 4, p. 115, doi. 10.1186/1752-0509-4-115

By:

Tortajada, Marta;
Llaneras, Francisco;
Picó, Jesús

Publication type:

Article

A yeast's eye view of mammalian reproduction: cross-species gene co-expression in meiotic prophase.

Published in:

BMC Systems Biology, 2010, v. 4, p. 125, doi. 10.1186/1752-0509-4-125

By:

Yunfei Li;
Ka-sum Lam;
Dasgupta, Nairanjana;
Ping Ye

Publication type:

Article

Integrative inference of gene-regulatory networks in Escherichia coli using information theoretic concepts and sequence analysis.

Published in:

BMC Systems Biology, 2010, v. 4, p. 116, doi. 10.1186/1752-0509-4-116

By:

Kaleta, Christoph;
Göhler, Anna;
Schuster, Stefan;
Jahreis, Knut;
Guthke, Reinhard;
Nikolajewa, Swetlana

Publication type:

Article

Robust dynamical pattern formation from a multifunctional minimal genetic circuit.

Published in:

BMC Systems Biology, 2010, v. 4, p. 48, doi. 10.1186/1752-0509-4-48

By:

Rodrigo, Guillermo;
Carrera, Javier;
Elena, Santiago F.;
Jaramillo, Alfonso

Publication type:

Article

On finite-horizon control of genetic regulatory networks with multiple hard-constraints.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S14

By:

Cong Yang;
Ching Wai-Ki;
Tsing Nam-Kiu;
Leung Ho-Yin

Publication type:

Article

Comparing biological networks via graph compression.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S13

By:

Hayashida, Morihiro;
Akutsu, Tatsuya

Publication type:

Article

FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S12

By:

Chenglei Sun;
Xing-Ming Zhao;
Weihua Tang;
Luonan Chen

Publication type:

Article

Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S11

By:

Zhi-Ping Liu;
Yong Wang;
Xiang-Sun Zhang;
Luonan Chen

Publication type:

Article

Determining modular organization of protein interaction networks by maximizing modularity density.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S10

By:

Shihua Zhang;
Xue-Mei Ning;
Chris Ding;
Xiang-Sun Zhang

Publication type:

Article

Parameter optimization by using differential elimination: a general approach for introducing constraints into objective functions.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S9

By:

Nakatsui, Masahiko;
Horimoto, Katsuhisa;
Okamoto, Masahiro;
Tokumoto, Yasuhito;
Miyake, Jun

Publication type:

Article

Inhibition of the interactions between eosinophil cationic protein and airway epithelial cells by traditional Chinese herbs.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S8

By:

Hao-Teng Chang;
Tseng, Louis J.;
Ta-Jen Hung;
Kao, Blacky T.;
Wei-Yong Lin;
Tan-chi Fan;
Margaret Dah-Tsyr Chang;
Tun-Wen Pai

Publication type:

Article

A systems biology approach to identify effective cocktail drugs.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S7

By:

Zikai Wu;
Xing-Ming Zhao;
Luonan Chen

Publication type:

Article

Semi-supervised drug-protein interaction prediction from heterogeneous biological spaces.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1

By:

Zheng Xia;
Ling-Yun Wu;
Xiaobo Zhou;
Wong, Stephen T. C.

Publication type:

Article

Shrunken methodology to genome-wide SNPs selection and construction of SNPs networks.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S5

By:

Yang Liu;
Ng, Michael

Publication type:

Article

Discovering conditional co-regulated protein complexes by integrating diverse data sources.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S4

By:

Fei Luo;
Juan Liu;
Jinyan Li

Publication type:

Article

Computational inference and analysis of genetic regulatory networks via a supervised combinatorial-optimization pattern.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S3

By:

Binhua Tang;
Xuechen Wu;
Ge Tan;
Su-Shing Chen;
Qing Jing;
Bairong Shen

Publication type:

Article

Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S2

By:

Srivastava, Gyan Prakash;
Ping Li;
Jingdong Liu;
Dong Xu

Publication type:

Article

Optimization meets systems biology.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S2-S1

By:

Yong Wang;
Xiang-Sun Zhang;
Luonan Chen

Publication type:

Article

Non-compartment model to compartment model pharmacokinetics transformation meta-analysis -- a multivariate nonlinear mixed model.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S1-S8

By:

Zhiping Wang;
Seongho Kim;
Quinney, Sara K.;
Jihao Zhou;
Lang Li

Publication type:

Article

ExprEssence - Revealing the essence of differential experimental data in the context of an interaction/regulation net-work.

Published in:

BMC Systems Biology, 2010, v. 4, p. 164, doi. 10.1186/1752-0509-4-164

By:

Warsow, Gregor;
Greber, Boris;
Falk, Steffi S. I.;
Harder, Clemens;
Siatkowski, Marcin;
Schordan, Sandra;
Som, Anup;
Endlich, Nicole;
Schöler, Hans;
Repsilber, Dirk;
Endlich, Karlhans;
Fuellen, Georg

Publication type:

Article

A novel gene network inference algorithm using predictive minimum description length approach.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S1-S7

By:

Chaitankar, Vijender;
Ghosh, Preetam;
Perkins, Edward J.;
Ping Gong;
Youping Deng;
Chaoyang Zhang

Publication type:

Article

3D Protein structure prediction with genetic tabu search algorithm.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S1-S6

By:

Xiaolong Zhang;
Ting Wang;
Huiping Luo;
Yang, Jack Y.;
Youping Deng;
Jinshan Tang;
Mary Qu Yang

Publication type:

Article

A conceptual cellular interaction model of left ventricular remodelling post-MI: dynamic network with exit-entry competition strategy.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S1-S5

By:

Yunji Wang;
Hai-Chao Han;
Yang, Jack Y.;
Lindsey, Merry L.;
Yufang Jin

Publication type:

Article

Genome-wide analysis of regions similar to promoters of histone genes.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S1-S4

By:

Chowdhary, Rajesh;
Bajic, Vladimir B.;
Dong, Difeng;
Limsoon Wong;
Liu, Jun S.

Publication type:

Article

BindN+ for accurate prediction of DNA and RNA-binding residues from protein sequence features.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S1-S3

By:

Liangjiang Wang;
Caiyan Huang;
Mary Qu Yang;
Yang, Jack Y.

Publication type:

Article

Prioritization of disease microRNAs through a human phenome-microRNAome network.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S1-S2

By:

Qinghua Jiang;
Yangyang Hao;
Guohua Wang;
Liran Juan;
Tianjiao Zhang;
Mingxiang Teng;
Yunlong Liu;
Yadong Wang

Publication type:

Article

Archaic chaos: intrinsically disordered proteins in Archaea.

Published in:

BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S1-S1

By:

Bin Xue;
Williams, Robert W.;
Oldfield, Christopher J.;
Dunker, A. Keith;
Uversky, Vladimir N.

Publication type:

Article

The protein kinase Mζ network as a bistable switch to store neuronal memory.

Published in:

BMC Systems Biology, 2010, v. 4, p. 181, doi. 10.1186/1752-0509-4-181

By:

Ogasawara, Hideaki;
Kawato, Mitsuo

Publication type:

Article

Integrated functional networks of process, tissue, and developmental stage specific interactions in Arabidopsis thaliana.

Published in:

BMC Systems Biology, 2010, v. 4, p. 180, doi. 10.1186/1752-0509-4-180

By:

Pop, Ana;
Huttenhower, Curtis;
Iyer-Pascuzzi, Anjali;
Benfey, Philip N.;
Troyanskaya, Olga G.

Publication type:

Article

Understanding protein evolutionary rate by integrating gene co-expression with protein interactions.

Published in:

BMC Systems Biology, 2010, v. 4, p. 179, doi. 10.1186/1752-0509-4-179

By:

Kaifang Pang;
Chao Cheng;
Zhenyu Xuan;
Huanye Sheng;
Xiaotu Ma

Publication type:

Article

Improving the iMM904 S. cerevisiae metabolic model using essentiality and synthetic lethality data.

Published in:

BMC Systems Biology, 2010, v. 4, p. 178, doi. 10.1186/1752-0509-4-178

By:

Zomorrodi, Ali R.;
Maranas, Costas D.

Publication type:

Article

Individual vs. combinatorial effect of elevated CO<sub>2</sub> conditions and salinity stress on Arabidopsis thaliana liquid cultures: Comparing the early molecular response using time-series transcriptomic and metabolomic analyses.

Published in:

BMC Systems Biology, 2010, v. 4, p. 177, doi. 10.1186/1752-0509-4-177

By:

Kanani, Harin;
Dutta, Bhaskar;
Klapa, Maria I.

Publication type:

Article

Targeted protein depletion in Saccharomyces cerevisiae by activation of a bidirectional degron.

Published in:

BMC Systems Biology, 2010, v. 4, p. 176, doi. 10.1186/1752-0509-4-176

By:

Jungbluth, Marc;
Renicke, Christian;
Taxis, Christof

Publication type:

Article

Bio-informatics analysis of a gene co-expression module in adipose tissue containing the dietresponsive gene Nnat.

Published in:

BMC Systems Biology, 2010, v. 4, p. 175, doi. 10.1186/1752-0509-4-175

By:

Xinzhong Li;
Thomason, Peter A.;
Withers, Dominic J.;
Scott, James

Publication type:

Article

Constraint-based modeling analysis of the metabolism of two Pelobacter species.

Published in:

BMC Systems Biology, 2010, v. 4, p. 174, doi. 10.1186/1752-0509-4-174

By:

Sun, Jun;
Haveman, Shelley A.;
Bui, Olivia;
Fahland, Tom R.;
Lovley, Derek R.

Publication type:

Article

SVM classifier to predict genes important for selfrenewal and pluripotency of mouse embryonic stem cells.

Published in:

BMC Systems Biology, 2010, v. 4, p. 173, doi. 10.1186/1752-0509-4-173

By:

Huilei Xu;
Lemischka, Ihor R.;
Ma'ayan, Avi

Publication type:

Article

Features analysis for identification of date and party hubs in protein interaction network of Saccharomyces Cerevisiae.

Published in:

BMC Systems Biology, 2010, v. 4, p. 172, doi. 10.1186/1752-0509-4-172

By:

Mirzarezaee, Mitra;
Araabi, Babak N.;
Sadeghi, Mehdi

Publication type:

Article

Robust dynamic balance of AP-1 transcription factors in a neuronal gene regulatory network.

Published in:

BMC Systems Biology, 2010, v. 4, p. 171, doi. 10.1186/1752-0509-4-171

By:

Miller, Gregory M.;
Ogunnaike, Babatunde A.;
Schwaber, James S.;
Vadigepalli, Rajanikanth

Publication type:

Article

Inference of hierarchical regulatory network of estrogen-dependent breast cancer through ChIPbased data.

Published in:

BMC Systems Biology, 2010, v. 4, p. 170, doi. 10.1186/1752-0509-4-170

By:

Fei Gu;
Hang-Kai Hsu;
Pei-Yin Hsu;
Jiejun Wu;
Yilin Ma;
Parvin, Jeffrey;
Huang, Tim H-M.;
Jin, Victor X.

Publication type:

Article

Defining the antigen receptor-dependent regulatory network that induces arrest of cycling immature B-lymphocytes.

Published in:

BMC Systems Biology, 2010, v. 4, p. 169, doi. 10.1186/1752-0509-4-169

By:

Jamal, Mohammad Sarwar;
Ravichandran, Srikanth;
Jailkhani, Noor;
Chatterjee, Samrat;
Dua, Raina;
Rao, Kanury V. S.

Publication type:

Article

Cloud computing and validation of expandable in silico livers.

Published in:

BMC Systems Biology, 2010, v. 4, p. 168, doi. 10.1186/1752-0509-4-168

By:

Ropella, Glen E. P.;
Anthony Hunt, C.

Publication type:

Article

Global analysis of phase locking in gene expression during cell cycle: the potential in network modeling.

Published in:

BMC Systems Biology, 2010, v. 4, p. 167, doi. 10.1186/1752-0509-4-167

By:

Gao, Shouguo;
Hartman, IV, John L.;
Carter, Justin L.;
Hessner, Martin J.;
Xujing Wang

Publication type:

Article

Systems biology approach reveals that overflow metabolism of acetate in Escherichia coli is triggered by carbon catabolite repression of acetyl-CoA synthetase.

Published in:

BMC Systems Biology, 2010, v. 4, p. 166, doi. 10.1186/1752-0509-4-166

By:

Valgepea, Kaspar;
Adamberg, Kaarel;
Nahku, Ranno;
Lahtvee, Petri-Jaan;
Arike, Liisa;
Vilu, Raivo

Publication type:

Article

Diffusive coupling can discriminate between similar reaction mechanisms in an allosteric enzyme system.

Published in:

BMC Systems Biology, 2010, v. 4, p. 165, doi. 10.1186/1752-0509-4-165

By:

Straube, Ronny;
Nicola, Ernesto M.

Publication type:

Article

A detailed genome-wide reconstruction of mouse metabolism based on human Recon 1.

Published in:

BMC Systems Biology, 2010, v. 4, p. 140, doi. 10.1186/1752-0509-4-140

By:

Sigurdsson, Martin I.;
Jamshidi, Neema;
Steingrimsson, Eirikur;
Thiele, Ines;
Palsson, Bernhard Ø.

Publication type:

Article

Integrated analysis of mutations, miRNA and mRNA expression in glioblastoma.

Published in:

BMC Systems Biology, 2010, v. 4, p. 163, doi. 10.1186/1752-0509-4-163

By:

Hua Dong;
Li Luo;
Shengjun Hong;
Hoicheong Siu;
Yanghua Xiao;
Li Jin;
Rui Chen;
Momiao Xiong

Publication type:

Article

Regulation patterns in signaling networks of cancer.

Published in:

BMC Systems Biology, 2010, v. 4, p. 162, doi. 10.1186/1752-0509-4-162

By:

Schramm, Gunnar;
Kannabiran, Nandakumar;
König, Rainer

Publication type:

Article

Confidence from uncertainty - A multi-target drug screening method from robust control theory.

Published in:

BMC Systems Biology, 2010, v. 4, p. 161, doi. 10.1186/1752-0509-4-161

By:

Luni, Camilla;
Shoemaker, Jason E.;
Sanft, Kevin R.;
Petzold, Linda R.;
Doyle, III, Francis J.

Publication type:

Article

Development and analysis of an in vivocompatible metabolic network of Mycobacterium tuberculosis.

Published in:

BMC Systems Biology, 2010, v. 4, p. 160, doi. 10.1186/1752-0509-4-160

By:

Xin Fang;
Wallqvist, Anders;
Reifman, Jaques

Publication type:

Article

Deducing corticotropin-releasing hormone receptor type 1 signaling networks from gene expression data by usage of genetic algorithmsand graphical Gaussian models.

Published in:

BMC Systems Biology, 2010, v. 4, p. 159, doi. 10.1186/1752-0509-4-159

By:

Trümbach, Dietrich;
Graf, Cornelia;
Pütz, Benno;
Kühne, Claudia;
Panhuysen, Marcus;
Weber, Peter;
Holsboer, Florian;
Wurst, Wolfgang;
Welzl, Gerhard;
Deussing, Jan M.

Publication type:

Article