Works matching IS 17520509 AND DT 2008 AND VI 2

Results: 111

Arena3D: visualization of biological networks in 3D.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-104

By:

Pavlopoulos, Georgios A.;
O'Donoghue, Seán I.;
Satagopam, Venkata P.;
Soldatos, Theodoros G.;
Pafilis, Evangelos;
Schneider, Reinhard

Publication type:

Article

ALC: automated reduction of rule-based models.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-91

By:

Koschorreck, Markus;
Gilles, Ernst Dieter

Publication type:

Article

An enzyme-centric approach for modelling non-linear biological complexity.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-70

By:

Chin-Rang Yang

Publication type:

Article

Modelling phagosomal lipid networks that regulate actin assembly.

Published in:: BMC Systems Biology, 2008, v. 2, p. 107, doi. 10.1186/1752-0509-2-107
Publication type:: Article

Multivariate gene expression analysis reveals functional connectivity changes between normal/tumoral prostates.

Published in:: BMC Systems Biology, 2008, v. 2, p. 106, doi. 10.1186/1752-0509-2-106
Publication type:: Article

RNA silencing can explain chlorotic infection patterns on plant leaves.

Published in:: BMC Systems Biology, 2008, v. 2, p. 105, doi. 10.1186/1752-0509-2-105
Publication type:: Article

Genetic and systems level analysis of Drosophila sticky/citron kinase and dFmr1 mutants reveals common regulation of genetic networks.

Published in:: BMC Systems Biology, 2008, v. 2, p. 101, doi. 10.1186/1752-0509-2-101
Publication type:: Article

The integrated analysis of metabolic and protein interaction networks reveals novel molecular organizing principles.

Published in:: BMC Systems Biology, 2008, v. 2, p. 100, doi. 10.1186/1752-0509-2-100
Publication type:: Article

Dynamical modeling of the cholesterol regulatory pathway withBoolean networks.

Published in:: BMC Systems Biology, 2008, v. 2, p. 99, doi. 10.1186/1752-0509-2-99
Publication type:: Article

Interlinked nonlinear subnetworks underlie the formation of robust cellular patterns in Arabidopsis epidermis: a dynamic spatial model.

Published in:: BMC Systems Biology, 2008, v. 2, p. 98, doi. 10.1186/1752-0509-2-98
Publication type:: Article

Stochastic analysis of the GAL genetic switch in Saccharomyces cerevisiae: Modeling and experiments reveal hierarchy in glucose repression.

Published in:: BMC Systems Biology, 2008, v. 2, p. 97, doi. 10.1186/1752-0509-2-97
Publication type:: Article

Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans.

Published in:: BMC Systems Biology, 2008, v. 2, p. 96, doi. 10.1186/1752-0509-2-96
Publication type:: Article

Integrated Weighted Gene Co-expression Network Analysis with an Application to Chronic Fatigue Syndrome.

Published in:: BMC Systems Biology, 2008, v. 2, p. 95, doi. 10.1186/1752-0509-2-95
Publication type:: Article

Genetic noise control via protein oligomerization.

Published in:: BMC Systems Biology, 2008, v. 2, p. 94, doi. 10.1186/1752-0509-2-94
Publication type:: Article

An in silico method for detecting overlapping functional modules from composite biological networks.

Published in:: BMC Systems Biology, 2008, v. 2, p. 93, doi. 10.1186/1752-0509-2-93
Publication type:: Article

From protein interactions to functional annotation: graph alignment in Herpes.

Published in:: BMC Systems Biology, 2008, v. 2, p. 90, doi. 10.1186/1752-0509-2-90
Publication type:: Article

Simulating in vitro transcriptional response of zinc homeostasis system in Escherichia coli.

Published in:: BMC Systems Biology, 2008, v. 2, p. 89, doi. 10.1186/1752-0509-2-89
Publication type:: Article

Using a 3D virtual muscle model to link gene expression changes during myogenesis to protein spatial location in muscle.

Published in:: BMC Systems Biology, 2008, v. 2, p. 88, doi. 10.1186/1752-0509-2-88
Publication type:: Article

A quantitative estimation of the global translational activity in logarithmically growing yeast cells.

Published in:: BMC Systems Biology, 2008, v. 2, p. 87, doi. 10.1186/1752-0509-2-87
Publication type:: Article

Iterative reconstruction of a global metabolic model of Acinetobacter baylyi ADP1 using high-throughput growth phenotype and gene essentiality data.

Published in:: BMC Systems Biology, 2008, v. 2, p. 85, doi. 10.1186/1752-0509-2-85
Publication type:: Article

Parameter estimation and determinability analysis applied to Drosophila gap gene circuits.

Published in:: BMC Systems Biology, 2008, v. 2, p. 83, doi. 10.1186/1752-0509-2-83
Publication type:: Article

Metabolic pathway alignment between species using acomprehensive and flexible similarity measure.

Published in:: BMC Systems Biology, 2008, v. 2, p. 111, doi. 10.1186/1752-0509-2-111
Publication type:: Article

Essential operating principles for tumor spheroid growth.

Published in:: BMC Systems Biology, 2008, v. 2, p. 110, doi. 10.1186/1752-0509-2-110
Publication type:: Article

targetTB: A target identification pipeline for Mycobacteriumtuberculosis through an interactome, reactome and genome-scalestructural analysis.

Published in:: BMC Systems Biology, 2008, v. 2, p. 109, doi. 10.1186/1752-0509-2-109
Publication type:: Article

Signal duration and the time scale dependence of signal integrationin biochemical pathways.

Published in:: BMC Systems Biology, 2008, v. 2, p. 108, doi. 10.1186/1752-0509-2-108
Publication type:: Article

A systematic molecular circuit design method for gene networksunder biochemical time delays and molecular noises.

Published in:: BMC Systems Biology, 2008, v. 2, p. 103, doi. 10.1186/1752-0509-2-103
Publication type:: Article

From pathway to population -- a multiscale model of juxtacrineEGFR-MAPK signalling.

Published in:: BMC Systems Biology, 2008, v. 2, p. 102, doi. 10.1186/1752-0509-2-102
Publication type:: Article

Dynamics of receptor and protein transducer homodimerisation.

Published in:: BMC Systems Biology, 2008, v. 2, p. 92, doi. 10.1186/1752-0509-2-92
Publication type:: Article

Robust simplifications of multiscale biochemical networks.

Published in:: BMC Systems Biology, 2008, v. 2, p. 86, doi. 10.1186/1752-0509-2-86
Publication type:: Article

Dynamical pathway analysis.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-9

By:

Hao Xiong;
Yoonsuck Choe

Publication type:

Article

Network evaluation from the consistency of the graph structure with the measured data.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-84

By:

Saito, Shigeru;
Aburatani, Sachiyo;
Horimoto, Katsuhisa

Publication type:

Article

Origin of structural difference in metabolic networks with respect to temperature.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-82

By:

Takemoto, Kazuhiro;
Akutsu, Tatsuya

Publication type:

Article

Employing conservation of co-expression to improve functional inference.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-81

By:

Daub, Carsten O.;
Sonnhammer, Erik L. L.

Publication type:

Article

The use of Gene Ontology terms for predicting highly-connected 'hub' nodes in protein-protein interaction networks.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-80

By:

Hsing, Michael;
Byler, Kendall Grant;
Cherkasov, Artem

Publication type:

Article

Regulatory network reconstruction using an integral additive model with flexible kernel functions.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-8

By:

Novikov, Eugene;
Barillot, Emmanuel

Publication type:

Article

A genome-scale metabolic reconstruction of Pseudomonas putida KT2440: iJN746 as a cell factory.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-79

By:

Nogales, Juan;
Palsson, Bernhard ø.;
Thiele, Ines

Publication type:

Article

Exact model reduction of combinatorial reaction networks.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-78

By:

Conzelmann, Holger;
Fey, Dirk;
Gilles, Ernst D.

Publication type:

Article

A compartment model of VEGF distribution in blood, healthy and diseased tissues.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-77

By:

Stefanini, Marianne O.;
Wu, Florence T. H.;
Gabhann, Feilim Mac;
Popel, Aleksander S.

Publication type:

Article

Rapidly exploring structural and dynamic properties of signaling networks using PathwayOracle.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-76

By:

Ruths, Derek;
Nakhleh, Luay;
Ram, Prahlad T.

Publication type:

Article

Explaining oscillations and variability in the p53-Mdm2 system.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-75

By:

Proctor, Carole J.;
Gray, Douglas A.

Publication type:

Article

A review of imaging techniques for systems biology.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-74

By:

Kherlopian, Armen R.;
Ting Song;
Qi Duan;
Neimark, Mathew A.;
Po, Ming J.;
Gohagan, John K.;
Laine, Andrew F.

Publication type:

Article

On the origin of distribution patterns of motifs in biological networks.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-73

By:

Konagurthu, Arun S.;
Lesk, Arthur M.

Publication type:

Article

Constructing disease-specific gene networks using pair-wise relevance metric: Application to colon cancer identifies interleukin 8, desmin and enolase 1 as the central elements.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-72

By:

Wei Jiang;
Xia Li;
Shaoqi Rao;
Lihong Wang;
Lei Du;
Chuanxing Li;
Chao Wu;
Hongzhi Wang;
Yadong Wang;
Baofeng Yang

Publication type:

Article

The genome-scale metabolic model iIN800 of Saccharomyces cerevisiae and its validation: a scaffold to query lipid metabolism.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-71

By:

Nookaew, Intawat;
Jewett, Michael C.;
Meechai, Asawin;
Thammarongtham, Chinae;
Laoteng, Kobkul;
Cheevadhanarak, Supapon;
Nielsen, Jens;
Bhumiratana, Sakarindr

Publication type:

Article

Impact of the solvent capacity constraint on E. coli metabolism.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-7

By:

Vazquez, Alexei;
Beg, Qasim K.;
DeMenezes, Marcio A.;
Ernst, Jason;
Bar-Joseph, Ziv;
Barabási, Albert-László;
Boros, László G.;
Oltvai, Zoltán N.

Publication type:

Article

Structural similarity of genetically interacting proteins.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-69

By:

Dror, Oranit;
Schneidman-Duhovny, Dina;
Shulman-Peleg, Alexandra;
Nussinov, Ruth;
Wolfson, Haim J.;
Sharan, Roded

Publication type:

Article

Modeling cellular deformations using the level set formalism.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-68

By:

Liu Yang;
Effler, Janet C.;
Kutscher, Brett L.;
Sullivan, Sarah E.;
Robinson, Douglas N.;
Iglesias, Pablo A.

Publication type:

Article

Machine learning based analyses on metabolic networks supports high-throughput knockout screens.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-67

By:

Plaimas, Kitiporn;
Mallm, Jan-Phillip;
Oswald, Marcus;
Svara, Fabian;
Sourjik, Victor;
Eils, Roland;
König, Rainer

Publication type:

Article

GridCell: a stochastic particle-based biological system simulator.

Published in:

2008

By:

Boulianne, Laurier;
Al Assaad, Sevin;
Dumontier, Michel;
Gross, Warren J.

Publication type:

Product Review

Incorporation of enzyme concentrations into FBA and identification of optimal metabolic pathways.

Published in:

BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-65

By:

De, Rajat K.;
Das, Mouli;
Mukhopadhyay, Subhasis

Publication type:

Article