Works matching IS 1752-0509 AND VI 11 AND DT 2017

Results: 146

Analysis of the main active ingredients and bioactivities of essential oil from Osmanthus fragrans Var. thunbergii using a complex network approach.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0523-0

By:

Le Wang;
Nana Tan;
Jiayao Hu;
Huan Wang;
Dongzhu Duan;
Lin Ma;
Jian Xiao;
Xiaoling Wang

Publication type:

Article

Microbiota dysbiosis in inflammatory bowel diseases: in silico investigation of the oxygen hypothesis.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0522-1

By:

Henson, Michael A.;
Phalak, Poonam

Publication type:

Article

Use of transcriptomic data for extending a model of the AppA/PpsR system in Rhodobacter sphaeroides.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0489-y

By:

Pandey, Rakesh;
Armitage, Judith P.;
Wadhams, George H.

Publication type:

Article

OptPipe - a pipeline for optimizing metabolic engineering targets.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0515-0

By:

Hartmann, András;
Vila-Santa, Ana;
Kallscheuer, Nicolai;
Vogt, Michael;
Julien-Laferrière, Alice;
Sagot, Marie-France;
Marienhagen, Jan;
Vinga, Susana

Publication type:

Article

Hadamard Kernel SVM with applications for breast cancer outcome predictions.

Published in:

BMC Systems Biology, 2017, v. 11, p. 163, doi. 10.1186/s12918-017-0514-1

By:

Hao Jiang;
Wai-Ki Ching;
Wai-Shun Cheung;
Wenpin Hou;
Hong Yin

Publication type:

Article

Constraint-based perturbation analysis with cluster Newton method: a case study of personalized parameter estimations with irinotecan whole-body physiologically based pharmacokinetic model.

Published in:

BMC Systems Biology, 2017, v. 11, p. 151, doi. 10.1186/s12918-017-0513-2

By:

Shun Asami;
Daisuke Kiga;
Akihiko Konagaya

Publication type:

Article

Detecting causality from short time-series data based on prediction of topologically equivalent attractors.

Published in:

BMC Systems Biology, 2017, v. 11, p. 141, doi. 10.1186/s12918-017-0512-3

By:

Ben-gong Zhang;
Weibo Li;
Yazhou Shi;
Xiaoping Liu;
Luonan Chen

Publication type:

Article

MDD-carb: a combinatorial model for the identification of protein carbonylation sites with substrate motifs.

Published in:

BMC Systems Biology, 2017, v. 11, p. 127, doi. 10.1186/s12918-017-0511-4

By:

Hui-Ju Kao;
Shun-Long Weng;
Kai-Yao Huang;
Fergie Joanda Kaunang;
Justin Bo-Kai Hsu;
Chien-Hsun Huang;
Tzong-Yi Lee

Publication type:

Article

Ontology-based systematic representation and analysis of traditional Chinese drugs against rheumatism.

Published in:

BMC Systems Biology, 2017, v. 11, p. 113, doi. 10.1186/s12918-017-0510-5

By:

Qingping Liu;
Jiahao Wang;
Yan Zhu;
Yongqun He

Publication type:

Article

Construction and analysis of gene-gene dynamics influence networks based on a Boolean model.

Published in:

BMC Systems Biology, 2017, v. 11, p. 101, doi. 10.1186/s12918-017-0509-y

By:

Mazaya, Maulida;
Hung-Cuong Trinh;
Yung-Keun Kwon

Publication type:

Article

Computational analysis reveals the coupling between bistability and the sign of a feedback loop in a TGF-β1 activation model.

Published in:

BMC Systems Biology, 2017, v. 11, p. 91, doi. 10.1186/s12918-017-0508-z

By:

Huipeng Li;
Venkatraman, Lakshmi;
Narmada, Balakrishnan Chakrapani;
White, Jacob K.;
Hanry Yu;
Tucker-Kellogg, Lisa

Publication type:

Article

Integrating transcriptional activity in genome-scale models of metabolism.

Published in:

BMC Systems Biology, 2017, v. 11, p. 81, doi. 10.1186/s12918-017-0507-0

By:

Banos, Daniel Trejo;
Trébulle, Pauline;
Elati, Mohamed

Publication type:

Article

Investigation and identification of functional post-translational modification sites associated with drug binding and protein-protein interactions.

Published in:

BMC Systems Biology, 2017, v. 11, p. 69, doi. 10.1186/s12918-017-0506-1

By:

Min-Gang Su;
Julia Tzu-Ya Weng;
Justin Bo-Kai Hsu;
Kai-Yao Huang;
Yu-Hsiang Chi;
Tzong-Yi Lee

Publication type:

Article

Investigation on changes of modularity and robustness by edge-removal mutations in signaling networks.

Published in:

BMC Systems Biology, 2017, v. 11, p. 57, doi. 10.1186/s12918-017-0505-2

By:

Cong-Doan Truong;
Yung-Keun Kwon

Publication type:

Article

CPredictor3.0: detecting protein complexes from PPI networks with expression data and functional annotations.

Published in:

BMC Systems Biology, 2017, v. 11, p. 45, doi. 10.1186/s12918-017-0504-3

By:

Ying Xu;
Jiaogen Zhou;
Shuigeng Zhou;
Jihong Guan

Publication type:

Article

Identification of natural antimicrobial peptides from bacteria through metagenomic and metatranscriptomic analysis of high-throughput transcriptome data of Taiwanese oolong teas.

Published in:

BMC Systems Biology, 2017, v. 11, p. 29, doi. 10.1186/s12918-017-0503-4

By:

Kai-Yao Huang;
Tzu-Hao Chang;
Jhih-Hua Jhong;
Yu-Hsiang Chi;
Wen-Chi Li;
Chien-Lung Chan;
Lai, K. Robert;
Tzong-Yi Lee

Publication type:

Article

A polynomial based model for cell fate prediction in human diseases.

Published in:

BMC Systems Biology, 2017, v. 11, p. 15, doi. 10.1186/s12918-017-0502-5

By:

Lichun Ma;
Jie Zheng

Publication type:

Article

A linear programming computational framework integrates phosphor-proteomics and prior knowledge to predict drug efficacy.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0501-6

By:

Zhiwei Ji;
Bing Wang;
Ke Yan;
Ligang Dong;
Guanmin Meng;
Lei Shi

Publication type:

Article

Systems healthcare: a holistic paradigm for tomorrow.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0521-2

By:

Fiandaca, Massimo S.;
Mapstone, Mark;
Connors, Elenora;
Jacobson, Mireille;
Monuki, Edwin S.;
Malik, Shaista;
Macciardi, Fabio;
Federoff, Howard J.

Publication type:

Article

Linking physiologically-based pharmacokinetic and genome-scale metabolic networks to understand estradiol biology.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0520-3

By:

Sier, Joanna H.;
Thumser, Alfred E.;
Plant, Nick J.

Publication type:

Article

Identification of regulatory modules in genome scale transcription regulatory networks.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0493-2

By:

Qi Song;
Grene, Ruth;
Heath, Lenwood S.;
Song Li

Publication type:

Article

Model checking optimal finite-horizon control for probabilistic gene regulatory networks.

Published in:

BMC Systems Biology, 2017, v. 11, p. 75, doi. 10.1186/s12918-017-0481-6

By:

Ou Wei;
Zonghao Guo;
Yun Niu;
Wenyuan Liao

Publication type:

Article

Identifying drug-pathway association pairs based on L<sub>2,1</sub>-integrative penalized matrix decomposition.

Published in:

BMC Systems Biology, 2017, v. 11, p. 63, doi. 10.1186/s12918-017-0480-7

By:

Jin-Xing Liu;
Dong-Qin Wang;
Chun-Hou Zheng;
Ying-Lian Gao;
Sha-Sha Wu;
Jun-Liang Shang

Publication type:

Article

Optimal projection method determination by Logdet Divergence and perturbed von-Neumann Divergence.

Published in:

BMC Systems Biology, 2017, v. 11, p. 45, doi. 10.1186/s12918-017-0479-0

By:

Hao Jiang;
Wai-Ki Ching;
Yushan Qiu;
Xiao-Qing Cheng

Publication type:

Article

A geometric method for contour extraction of Drosophila embryos.

Published in:

BMC Systems Biology, 2017, v. 11, p. 35, doi. 10.1186/s12918-017-0478-1

By:

Qi Li;
Yongyi Gong

Publication type:

Article

A unified frame of predicting side effects of drugs by using linear neighborhood similarity.

Published in:

BMC Systems Biology, 2017, v. 11, p. 23, doi. 10.1186/s12918-017-0477-2

By:

Wen Zhang;
Xiang Yue;
Feng Liu;
Yanlin Chen;
Shikui Tu;
Xining Zhang

Publication type:

Article

Reconstructing evolutionary trees in parallel for massive sequences.

Published in:

BMC Systems Biology, 2017, v. 11, p. 15, doi. 10.1186/s12918-017-0476-3

By:

Quan Zou;
Shixiang Wan;
Xiangxiang Zeng;
Zhanshan Sam Ma

Publication type:

Article

Mining significant high utility gene regulation sequential patterns.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0475-4

By:

Zihayat, Morteza;
Davoudi, Heidar;
An, Aijun

Publication type:

Article

Estimating drivers of cell state transitions using gene regulatory network models.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0517-y

By:

Schlauch, Daniel;
Glass, Kimberly;
Hersh, Craig P.;
Silverman, Edwin K.;
Quackenbush, John

Publication type:

Article

A simple and accurate rule-based modeling framework for simulation of autocrine/ paracrine stimulation of glioblastoma cell motility and proliferation by L1CAM in 2-D culture.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0516-z

By:

Caccavale, Justin;
Fiumara, David;
Stapf, Michael;
Sweitzer, Liedeke;
Anderson, Hannah J.;
Gorky, Jonathan;
Dhurjati, Prasad;
Galileo, Deni S.

Publication type:

Article

GoldenPiCS: a Golden Gate-derived modular cloning system for applied synthetic biology in the yeast Pichia pastoris.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0492-3

By:

Prielhofer, Roland;
Barrero, Juan J.;
Steuer, Stefanie;
Gassler, Thomas;
Zahrl, Richard;
Baumann, Kristin;
Sauer, Michael;
Mattanovich, Diethard;
Gasser, Brigitte;
Marx, Hans

Publication type:

Article

Gene gravity-like algorithm for disease gene prediction based on phenotype-specific network.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0519-9

By:

Limei Lin;
Tinghong Yang;
Ling Fang;
Jian Yang;
Fan Yang;
Jing Zhao

Publication type:

Article

A framework to find the logic backbone of a biological network.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0482-5

By:

Maheshwari, Parul;
Albert, Réka

Publication type:

Article

Hilbert-Schmidt and Sobol sensitivity indices for static and time series Wnt signaling measurements in colorectal cancer - part A.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0488-z

By:

Sinha, Shriprakash

Publication type:

Article

Designing synthetic networks in silico: a generalised evolutionary algorithm approach.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0499-9

By:

Smith, Robert W.;
van Sluijs, Bob;
Fleck, Christian

Publication type:

Article

Genetic toggle switch controlled by bacterial growth rate.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0483-4

By:

Jaruszewicz-Błońska, Joanna;
Lipniacki, Tomasz

Publication type:

Article

Synthetic enhancer design by in silico compensatory evolution reveals flexibility and constraint in cis-regulation.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0485-2

By:

Barr, Kenneth A.;
Martinez, Carlos;
Moran, Jennifer R.;
Ah-Ram Kim;
Ramos, Alexandre F.;
Reinitz, John

Publication type:

Article

MitoCore: a curated constraint-based model for simulating human central metabolism.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0500-7

By:

Smith, Anthony C.;
Eyassu, Filmon;
Mazat, Jean-Pierre;
Robinson, Alan J.

Publication type:

Article

A multiscale modeling study of particle size effects on the tissue penetration efficacy of drug-delivery nanoparticles.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0491-4

By:

Islam, Mohammad Aminul;
Barua, Sutapa;
Barua, Dipak

Publication type:

Article

Genome-wide analysis of E. coli cell-gene interactions.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0494-1

By:

Cardinale, S.;
Cambray, G.

Publication type:

Article

Multiscale positive feedbacks contribute to unidirectional gastric disease progression induced by helicobacter pylori infection.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0497-y

By:

Ballweg, Richard;
Schozer, Frederick;
Elliott, Kelsey;
Kuhn, Alexander;
Spotts, Logan;
Aihara, Eitaro;
Tongli Zhang

Publication type:

Article

Graph-theoretical comparison of normal and tumor networks in identifying BRCA genes.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0495-0

By:

Dopazo, Joaquin;
Erten, Cesim

Publication type:

Article

A computational study of the inhibition mechanisms of P-glycoprotein mediated paclitaxel efflux by kinase inhibitors.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0498-x

By:

Bender, Joe;
Fang, Jianwen;
Simon, Richard

Publication type:

Article

Metabolic adaptation of two in silico mutants of Mycobacterium tuberculosis during infection.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0496-z

By:

Agudelo, Víctor A. López;
Baena, Andres;
Malule, Howard Ramirez;
Ochoa, Silvia;
Barrera, Luis F.;
Ríos-Estepa, Rigoberto

Publication type:

Article

Monitoring of nutrient limitation in growing E. coli: a mathematical model of a ppGpp-based biosensor.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0490-5

By:

Pokhilko, Alexandra

Publication type:

Article

Inferring gene regulatory networks from single-cell data: a mechanistic approach.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0487-0

By:

Herbach, Ulysse;
Bonnaffoux, Arnaud;
Thibault Espinasse;
Gandrillon, Olivier

Publication type:

Article

Network pharmacological mechanisms of Vernonia anthelmintica (L.) in the treatment of vitiligo: Isorhamnetin induction of melanogenesis via up-regulation of melanin-biosynthetic genes.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0486-1

By:

Ji Ye Wang;
Hong Chen;
Yin Yin Wang;
Xiao Qin Wang;
Han Ying Chen;
Mei Zhang;
Yun Tang;
Bo Zhang

Publication type:

Article

Genotype-driven identification of a molecular network predictive of advanced coronary calcium in ClinSeq® and Framingham Heart Study cohorts.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0474-5

By:

Oguz, Cihan;
Sen, Shurjo K.;
Davis, Adam R.;
Yi-Ping Fu;
O'Donnell, Christopher J.;
Gibbons, Gary H.

Publication type:

Article

Paracrine and autocrine regulation of gene expression by Wnt-inhibitor Dickkopf in wild-type and mutant hepatocytes.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0470-9

By:

Hartung, Niklas;
Benary, Uwe;
Wolf, Jana;
Kofahl, Bente

Publication type:

Article

Informed walks: whispering hints to gene hunters inside networks' jungle.

Published in:

BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0473-6

By:

Bourdakou, Marilena M.;
Spyrou, George M.

Publication type:

Article