Works matching IS 17487188 AND DT 2023 AND VI 18 AND IP 1

Results: 21

New algorithms for structure informed genome rearrangement.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00239-x

By:

Ozeri, Eden;
Zehavi, Meirav;
Ziv-Ukelson, Michal

Publication type:

Article

Automated design of dynamic programming schemes for RNA folding with pseudoknots.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00229-z

By:

Marchand, Bertrand;
Will, Sebastian;
Berkemer, Sarah J.;
Ponty, Yann;
Bulteau, Laurent

Publication type:

Article

EMMA: a new method for computing multiple sequence alignments given a constraint subset alignment.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00247-x

By:

Shen, Chengze;
Liu, Baqiao;
Williams, Kelly P.;
Warnow, Tandy

Publication type:

Article

Relative timing information and orthology in evolutionary scenarios.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00240-4

By:

Schaller, David;
Hartmann, Tom;
Lafond, Manuel;
Stadler, Peter F.;
Wieseke, Nicolas;
Hellmuth, Marc

Publication type:

Article

Constructing founder sets under allelic and non-allelic homologous recombination.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00241-3

By:

Bonnet, Konstantinn;
Marschall, Tobias;
Doerr, Daniel

Publication type:

Article

Efficient gene orthology inference via large-scale rearrangements.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00238-y

By:

Rubert, Diego P.;
Braga, Marília D. V.

Publication type:

Article

Correction: Constructing founder sets under allelic and non-allelic homologous recombination.

Published in:

2023

By:

Bonnet, Konstantinn;
Marschall, Tobias;
Doerr, Daniel

Publication type:

Correction Notice

Quartets enable statistically consistent estimation of cell lineage trees under an unbiased error and missingness model.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00248-w

By:

Han, Yunheng;
Molloy, Erin K.

Publication type:

Article

Constructing phylogenetic networks via cherry picking and machine learning.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00233-3

By:

Bernardini, Giulia;
van Iersel, Leo;
Julien, Esther;
Stougie, Leen

Publication type:

Article

Eulertigs: minimum plain text representation of k-mer sets without repetitions in linear time.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00227-1

By:

Schmidt, Sebastian;
Alanko, Jarno N.

Publication type:

Article

A classification algorithm based on dynamic ensemble selection to predict mutational patterns of the envelope protein in HIV-infected patients.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00228-0

By:

Fili, Mohammad;
Hu, Guiping;
Han, Changze;
Kort, Alexa;
Trettin, John;
Haim, Hillel

Publication type:

Article

On weighted k-mer dictionaries.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00226-2

By:

Pibiri, Giulio Ermanno

Publication type:

Article

Pangenomic genotyping with the marker array.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00225-3

By:

Mun, Taher;
Vaddadi, Naga Sai Kavya;
Langmead, Ben

Publication type:

Article

Weighted ASTRID: fast and accurate species trees from weighted internode distances.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00230-6

By:

Liu, Baqiao;
Warnow, Tandy

Publication type:

Article

The solution surface of the Li-Stephens haplotype copying model.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00237-z

By:

Jin, Yifan;
Terhorst, Jonathan

Publication type:

Article

phyBWT2: phylogeny reconstruction via eBWT positional clustering.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00232-4

By:

Guerrini, Veronica;
Conte, Alessio;
Grossi, Roberto;
Liti, Gianni;
Rosone, Giovanna;
Tattini, Lorenzo

Publication type:

Article

A topology-marginal composite likelihood via a generalized phylogenetic pruning algorithm.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00235-1

By:

Jun, Seong-Hwan;
Nasif, Hassan;
Jennings-Shaffer, Chris;
Rich, David H;
Kooperberg, Anna;
Fourment, Mathieu;
Zhang, Cheng;
Suchard, Marc A;
Matsen IV, Frederick A

Publication type:

Article

On the complexity of non-binary tree reconciliation with endosymbiotic gene transfer.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00231-5

By:

Gascon, Mathieu;
El-Mabrouk, Nadia

Publication type:

Article

Mono-valent salt corrections for RNA secondary structures in the ViennaRNA package.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00236-0

By:

Yao, Hua-Ting;
Lorenz, Ronny;
Hofacker, Ivo L.;
Stadler, Peter F.

Publication type:

Article

Locality-sensitive bucketing functions for the edit distance.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00234-2

By:

Chen, Ke;
Shao, Mingfu

Publication type:

Article

All galls are divided into three or more parts: recursive enumeration of labeled histories for galled trees.

Published in:

Algorithms for Molecular Biology, 2023, v. 18, n. 1, p. 1, doi. 10.1186/s13015-023-00224-4

By:

Mathur, Shaili;
Rosenberg, Noah A.

Publication type:

Article