Works matching IS 17487188 AND DT 2021 AND VI 16 AND IP 1

Results: 27

An optimized FM-index library for nucleotide and amino acid search.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00204-6

By:

Anderson, Tim;
Wheeler, Travis J.

Publication type:

Article

An optimized FM-index library for nucleotide and amino acid search.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00204-6

By:

Anderson, Tim;
Wheeler, Travis J.

Publication type:

Article

An improved approximation algorithm for the reversal and transposition distance considering gene order and intergenic sizes.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00203-7

By:

Brito, Klairton L.;
Oliveira, Andre R.;
Alexandrino, Alexsandro O.;
Dias, Ulisses;
Dias, Zanoni

Publication type:

Article

A simpler linear-time algorithm for the common refinement of rooted phylogenetic trees on a common leaf set.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00202-8

By:

Schaller, David;
Hellmuth, Marc;
Stadler, Peter F.

Publication type:

Article

Testing the agreement of trees with internal labels.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00201-9

By:

Fernández-Baca, David;
Liu, Lei

Publication type:

Article

Approximation algorithm for rearrangement distances considering repeated genes and intergenic regions.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00200-w

By:

Siqueira, Gabriel;
Alexandrino, Alexsandro Oliveira;
Oliveira, Andre Rodrigues;
Dias, Zanoni

Publication type:

Article

DeepGRP: engineering a software tool for predicting genomic repetitive elements using Recurrent Neural Networks with attention.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00199-0

By:

Hausmann, Fabian;
Kurtz, Stefan

Publication type:

Article

Heuristic algorithms for best match graph editing.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00196-3

By:

Schaller, David;
Geiß, Manuela;
Hellmuth, Marc;
Stadler, Peter F.

Publication type:

Article

A novel method for inference of acyclic chemical compounds with bounded branch-height based on artificial neural networks and integer programming.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00197-2

By:

Azam, Naveed Ahmed;
Zhu, Jianshen;
Sun, Yanming;
Shi, Yu;
Shurbevski, Aleksandar;
Zhao, Liang;
Nagamochi, Hiroshi;
Akutsu, Tatsuya

Publication type:

Article

INGOT-DR: an interpretable classifier for predicting drug resistance in M. tuberculosis.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00198-1

By:

Zabeti, Hooman;
Dexter, Nick;
Safari, Amir Hosein;
Sedaghat, Nafiseh;
Libbrecht, Maxwell;
Chindelevitch, Leonid

Publication type:

Article

Approximate search for known gene clusters in new genomes using PQ-trees.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00190-9

By:

Zimerman, Galia R.;
Svetlitsky, Dina;
Zehavi, Meirav;
Ziv-Ukelson, Michal

Publication type:

Article

Shape decomposition algorithms for laser capture microdissection.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00193-6

By:

Selbach, Leonie;
Kowalski, Tobias;
Gerwert, Klaus;
Buchin, Maike;
Mosig, Axel

Publication type:

Article

Distinguishing linear and branched evolution given single-cell DNA sequencing data of tumors.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00194-5

By:

Weber, Leah L.;
El-Kebir, Mohammed

Publication type:

Article

Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00195-4

By:

Frisby, Trevor S.;
Langmead, Christopher James

Publication type:

Article

Using the longest run subsequence problem within homology-based scaffolding.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00191-8

By:

Schrinner, Sven;
Goel, Manish;
Wulfert, Michael;
Spohr, Philipp;
Schneeberger, Korbinian;
Klau, Gunnar W.

Publication type:

Article

Using Robinson-Foulds supertrees in divide-and-conquer phylogeny estimation.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00189-2

By:

Yu, Xilin;
Le, Thien;
Christensen, Sarah A.;
Molloy, Erin K.;
Warnow, Tandy

Publication type:

Article

Disk compression of k-mer sets.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00192-7

By:

Rahman, Amatur;
Chikhi, Rayan;
Medvedev, Paul

Publication type:

Article

The Bourque distances for mutation trees of cancers.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00188-3

By:

Jahn, Katharina;
Beerenwinkel, Niko;
Zhang, Louxin

Publication type:

Article

The energy-spectrum of bicompatible sequences.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00187-4

By:

Huang, Fenix W.;
Barrett, Christopher L.;
Reidys, Christian M.

Publication type:

Article

Improving metagenomic binning results with overlapped bins using assembly graphs.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00185-6

By:

Mallawaarachchi, Vijini G.;
Wickramarachchi, Anuradha S.;
Lin, Yu

Publication type:

Article

Fast and efficient Rmap assembly using the Bi-labelled de Bruijn graph.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00182-9

By:

Mukherjee, Kingshuk;
Rossi, Massimiliano;
Salmela, Leena;
Boucher, Christina

Publication type:

Article

Natural family-free genomic distance.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00183-8

By:

Rubert, Diego P.;
Martinez, Fábio V.;
Braga, Marília D. V.

Publication type:

Article

Natural family-free genomic distance.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00183-8

By:

Rubert, Diego P.;
Martinez, Fábio V.;
Braga, Marília D. V.

Publication type:

Article

LazyB: fast and cheap genome assembly.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00186-5

By:

Gatter, Thomas;
von Löhneysen, Sarah;
Fallmann, Jörg;
Drozdova, Polina;
Hartmann, Tom;
Stadler, Peter F.

Publication type:

Article

Fast lightweight accurate xenograft sorting.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00181-w

By:

Zentgraf, Jens;
Rahmann, Sven

Publication type:

Article

Quantifying steric hindrance and topological obstruction to protein structure superposition.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-020-00180-3

By:

Røgen, Peter

Publication type:

Article

Exact transcript quantification over splice graphs.

Published in:

Algorithms for Molecular Biology, 2021, v. 16, n. 1, p. 1, doi. 10.1186/s13015-021-00184-7

By:

Ma, Cong;
Zheng, Hongyu;
Kingsford, Carl

Publication type:

Article