Works matching IS 17487188 AND DT 2020 AND VI 15 AND IP 1

Results: 19

Fast and accurate structure probability estimation for simultaneous alignment and folding of RNAs with Markov chains.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00179-w

By:

Miladi, Milad;
Raden, Martin;
Will, Sebastian;
Backofen, Rolf

Publication type:

Article

gsufsort: constructing suffix arrays, LCP arrays and BWTs for string collections.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. N.PAG, doi. 10.1186/s13015-020-00177-y

By:

Louza, Felipe A.;
Telles, Guilherme P.;
Gog, Simon;
Prezza, Nicola;
Rosone, Giovanna

Publication type:

Article

A linear-time algorithm that avoids inverses and computes Jackknife (leave-one-out) products like convolutions or other operators in commutative semigroups.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. N.PAG, doi. 10.1186/s13015-020-00178-x

By:

Spouge, John L.;
Ziegelbauer, Joseph M.;
Gonzalez, Mileidy

Publication type:

Article

Reconstruction of time-consistent species trees.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. N.PAG, doi. 10.1186/s13015-020-00175-0

By:

Lafond, Manuel;
Hellmuth, Marc

Publication type:

Article

On an enhancement of RNA probing data using information theory.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00176-z

By:

Li, Thomas J. X.;
Reidys, Christian M.

Publication type:

Article

Algorithms for the quantitative Lock/Key model of cytoplasmic incompatibility.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00174-1

By:

Calamoneri, Tiziana;
Gastaldello, Mattia;
Mary, Arnaud;
Sagot, Marie-France;
Sinaimeri, Blerina

Publication type:

Article

Fast computation of genome-metagenome interaction effects.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. N.PAG, doi. 10.1186/s13015-020-00173-2

By:

Guinot, Florent;
Szafranski, Marie;
Chiquet, Julien;
Zancarini, Anouk;
Le Signor, Christine;
Mougel, Christophe;
Ambroise, Christophe

Publication type:

Article

Evolution through segmental duplications and losses: a Super-Reconciliation approach.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00171-4

By:

Delabre, Mattéo;
El-Mabrouk, Nadia;
Huber, Katharina T.;
Lafond, Manuel;
Moulton, Vincent;
Noutahi, Emmanuel;
Castellanos, Miguel Sautie

Publication type:

Article

Precise parallel volumetric comparison of molecular surfaces and electrostatic isopotentials.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00168-z

By:

Georgiev, Georgi D.;
Dodd, Kevin F.;
Chen, Brian Y.

Publication type:

Article

Context-aware seeds for read mapping.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00172-3

By:

Xin, Hongyi;
Shao, Mingfu;
Kingsford, Carl

Publication type:

Article

Detecting transcriptomic structural variants in heterogeneous contexts via the Multiple Compatible Arrangements Problem.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00170-5

By:

Qiu, Yutong;
Ma, Cong;
Xie, Han;
Kingsford, Carl

Publication type:

Article

The distance and median problems in the single-cut-or-join model with single-gene duplications.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00169-y

By:

Mane, Aniket C.;
Lafond, Manuel;
Feijao, Pedro C.;
Chauve, Cedric

Publication type:

Article

Non-parametric and semi-parametric support estimation using SEquential RESampling random walks on biomolecular sequences.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00167-0

By:

Wang, Wei;
Smith, Jack;
Hejase, Hussein A.;
Liu, Kevin J.

Publication type:

Article

Linear-time algorithms for phylogenetic tree completion under Robinson–Foulds distance.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00166-1

By:

Bansal, Mukul S.

Publication type:

Article

From pairs of most similar sequences to phylogenetic best matches.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00165-2

By:

Stadler, Peter F.;
Geiß, Manuela;
Schaller, David;
López Sánchez, Alitzel;
González Laffitte, Marcos;
Valdivia, Dulce I.;
Hellmuth, Marc;
Hernández Rosales, Maribel

Publication type:

Article

Alignment- and reference-free phylogenomics with colored de Bruijn graphs.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-00164-3

By:

Wittler, Roland

Publication type:

Article

GrpClassifierEC: a novel classification approach based on the ensemble clustering space.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-0162-7

By:

Abdallah, Loai;
Yousef, Malik

Publication type:

Article

Finding all maximal perfect haplotype blocks in linear time.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-020-0163-6

By:

Alanko, Jarno;
Bannai, Hideo;
Cazaux, Bastien;
Peterlongo, Pierre;
Stoye, Jens

Publication type:

Article

Non-parametric correction of estimated gene trees using TRACTION.

Published in:

Algorithms for Molecular Biology, 2020, v. 15, n. 1, p. 1, doi. 10.1186/s13015-019-0161-8

By:

Christensen, Sarah;
Molloy, Erin K.;
Vachaspati, Pranjal;
Yammanuru, Ananya;
Warnow, Tandy

Publication type:

Article