Phylogeny reconstruction based on the length distribution of k-mismatch common substrings.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0118-8
- By:
- Publication type:
- Article
Works matching IS 17487188 AND DT 2017 AND VI 12
Results: 27
1
2
Generalized enhanced suffix array construction in external memory.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0117-9
- By:
- Publication type:
- Article
3
HAlign-II: efficient ultra-large multiple sequence alignment and phylogenetic tree reconstruction with distributed and parallel computing.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0116-x
- By:
- Publication type:
- Article
4
Algorithms for matching partially labelled sequence graphs.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0115-y
- By:
- Publication type:
- Article
5
Partially local three-way alignments and the sequence signatures of mitochondrial genome rearrangements.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0113-0
- By:
- Publication type:
- Article
6
Biologically feasible gene trees, reconciliation maps and informative triples.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0114-z
- By:
- Publication type:
- Article
7
A hybrid parameter estimation algorithm for beta mixtures and applications to methylation state classification.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, n. 1, p. 1, doi. 10.1186/s13015-017-0112-1
- By:
- Publication type:
- Article
8
ASP-based method for the enumeration of attractors in non-deterministic synchronous and asynchronous multi-valued networks.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0111-2
- By:
- Publication type:
- Article
9
Identification of bifurcation transitions in biological regulatory networks using Answer-Set Programming.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0110-3
- By:
- Publication type:
- Article
10
A graph extension of the positional Burrows-Wheeler transform and its applications.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0109-9
- By:
- Publication type:
- Article
11
Isometric gene tree reconciliation revisited.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0108-x
- By:
- Publication type:
- Article
12
Algorithms for computing the double cut and join distance on both gene order and intergenic sizes.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0107-y
- By:
- Publication type:
- Article
13
StreAM-T<sub>g</sub>: algorithms for analyzing coarse grained RNA dynamics based on Markov models of connectivity-graphs.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 2, doi. 10.1186/s13015-017-0105-0
- By:
- Publication type:
- Article
14
The gene family-free median of three.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0106-z
- By:
- Publication type:
- Article
15
Complexity and algorithms for copy-number evolution problems.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0103-2
- By:
- Publication type:
- Article
16
A better scoring model for de novo peptide sequencing: the symmetric difference between explained and measured masses.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0104-1
- By:
- Publication type:
- Article
17
Core column prediction for protein multiple sequence alignments.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0102-3
- By:
- Publication type:
- Article
18
Aligning coding sequences with frameshift extension penalties.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0101-4
- By:
- Publication type:
- Article
19
Gerbil: a fast and memory-efficient k-mer counter with GPU-support.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0097-9
- By:
- Publication type:
- Article
20
The feasibility of genome-scale biological network inference using Graphics Processing Units.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0100-5
- By:
- Publication type:
- Article
21
An efficient algorithm for testing the compatibility of phylogenies with nested taxa.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0099-7
- By:
- Publication type:
- Article
22
On the computational complexity of the maximum parsimony reconciliation problem in the duplication-loss-coalescence model.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0098-8
- By:
- Publication type:
- Article
23
On avoided words, absent words, and their application to biological sequence analysis.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0094-z
- By:
- Publication type:
- Article
24
Approximating the correction of weighted and unweighted orthology and paralogy relations.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0096-x
- By:
- Publication type:
- Article
25
Approximating the DCJ distance of balanced genomes in linear time.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0095-y
- By:
- Publication type:
- Article
26
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0091-2
- By:
- Publication type:
- Article
27
Best hits of 11110110111: model-free selection and parameter-free sensitivity calculation of spaced seeds.
- Published in:
- Algorithms for Molecular Biology, 2017, v. 12, p. 1, doi. 10.1186/s13015-017-0092-1
- By:
- Publication type:
- Article