Works matching IS 17487188 AND DT 2013 AND VI 8 AND IP 1

Results: 29

On the protein folding problem in 2D-triangular Lattices.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-30

By:

Sohidull Islam, Abu Sayed Md;
Rahman, Mohammad Sohel

Publication type:

Article

Efficient edit distance with duplications and contractions.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-27

By:

Pinhas, Tamar;
Zakov, Shay;
Tsur, Dekel;
Ziv-Ukelson, Michal

Publication type:

Article

Asymptotic structural properties of quasi-random saturated structures of RNA.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-24

By:

Clote, Peter;
Kranakis, Evangelos;
Krizanc, Danny

Publication type:

Article

Accelerating calculations of RNA secondary structure partition functions using GPUs.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-29

By:

Stern, Harry A.;
Mathews, David H.

Publication type:

Article

Inferring species trees from incongruent multi-copy gene trees using the Robinson-Foulds distance.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-28

By:

Chaudhary, Ruchi;
Burleigh, John Gordon;
Fernández-Baca, David

Publication type:

Article

Recursive algorithms for phylogenetic tree counting.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-26

By:

Gavryushkina, Alexandra;
Welch, David;
Drummond, Alexei J

Publication type:

Article

Space-efficient and exact de Bruijn graph representation based on a Bloom filter.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-22

By:

Chikhi, Rayan;
Rizk, Guillaume

Publication type:

Article

An enhancement of binary particle swarm optimization for gene selection in classifying cancer classes.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-15

By:

Mohamad, Mohd Saberi;
Omatu, Sigeru;
Deris, Safaai;
Michifumi Yoshioka;
Abdullah, Afnizanfaizal;
Ibrahim, Zuwairie

Publication type:

Article

Reconciliation and local gene tree rearrangement can be of mutual profit.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-12

By:

Thi Hau Nguyen;
Ranwez, Vincent;
Pointet, Stéphanie;
Chifolleau, Anne-Muriel Arigon;
Doyon, Jean-Philippe;
Berry, Vincent

Publication type:

Article

DCJ-indel and DCJ-substitution distances with distinct operation costs.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-21

By:

da Silva, Poly H.;
Machado, Raphael;
Dantas, Simone;
Braga, Marília D. V.

Publication type:

Article

Unrooted unordered homeomorphic subtree alignment of RNA trees.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-13

By:

Milo, Nimrod;
Zakov, Shay;
Katzenelson, Erez;
Bachmat, Eitan;
Dinitz, Yefim;
Ziv-Ukelson, Michal

Publication type:

Article

Fast half-sibling population reconstruction: theory and algorithms.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-20

By:

Dexter, Daniel;
Brown, Daniel G.

Publication type:

Article

MORPH-PRO: a novel algorithm and web server for protein morphing.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-19

By:

Castellana, Natalie E.;
Lushnikov, Andrey;
Rotkiewicz, Piotr;
Sefcovic, Natasha;
Pevzner, Pavel A.;
Godzik, Adam;
Vyatkina, Kira

Publication type:

Article

Extracting conflict-free information from multi-labeled trees.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-18

By:

Deepak, Akshay;
Fernández-Baca, David;
McMahon, Michelle M.

Publication type:

Article

Estimating population size via line graph reconstruction.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-17

By:

Halldórsson, Bjarni V.;
Blokh, Dima;
Sharan, Roded

Publication type:

Article

MCOIN: a novel heuristic for determining transcription factor binding site motif width.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-16

By:

Kilpatrick, Alastair M.;
Ward, Bruce;
Aitken, Stuart

Publication type:

Article

LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-14

By:

Will, Sebastian;
Siebauer, Michael F.;
Heyne, Steffen;
Engelhardt, Jan;
Stadler, Peter F.;
Reiche, Kristin;
Backofen, Rolf

Publication type:

Article

Ultrametric networks: a new tool for phylogenetic analysis.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-7

By:

Apostolico, Alberto;
Comin, Matteo;
Dress, Andres;
Parida, Laxmi

Publication type:

Article

Incompatible quartets, triplets, and characters.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-11

By:

Shutters, Brad;
Vakati, Sudheer;
Fernández-Baca, David

Publication type:

Article

Gene Ontology consistent protein function prediction: the FALCON algorithm applied to six eukaryotic genomes.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-10

By:

AI Kourmpetis, Yiannis;
van Dijk, Aalt D. J.;
ter Braak, Cajo J. F.

Publication type:

Article

Coexpression and coregulation analysis of time-series gene expression data in estrogen-induced breast cancer cell.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-9

By:

Bhar, Anirban;
Haubrock, Martin;
Mukhopadhyay, Anirban;
Maulik, Ujjwal;
Bandyopadhyay, Sanghamitra;
Wingender, Edgar

Publication type:

Article

Resolving spatial inconsistencies in chromosome conformation measurements.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-8

By:

Duggal, Geet;
Patro, Rob;
Sefer, Emre;
Hao Wang;
Filippova, Darya;
Khuller, Samir;
Kingsford, Carl

Publication type:

Article

DCJ-Indel sorting revisited.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-6

By:

Compeau, Phillip E. C.

Publication type:

Article

Protein Structure Idealization: How accurately is it possible to model protein structures with dihedral angles?

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-5

By:

Xuefeng Cui;
Shuai Cheng Li;
Dongbo Bu;
Alipanahi, Babak;
Ming Li

Publication type:

Article

Configurable pattern-based evolutionary biclustering of gene expression data.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-4

By:

Pontes, Beatriz;
Giráldez, Raúl;
Aguilar-Ruiz, Jesús S.

Publication type:

Article

Using graph models to find transcription factor modules: the hitting set problem and an exact algorithm.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-2

By:

Songjian Lu;
Xinghua Lu

Publication type:

Article

A mixed integer linear programming model to reconstruct phylogenies from single nucleotide polymorphism haplotypes under the maximum parsimony criterion.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-3

By:

Catanzaro, Daniele;
Ravi, Ramamoorthi;
Schwartz, Russell

Publication type:

Article

The difficulty of protein structure alignment under the RMSD.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 1, doi. 10.1186/1748-7188-8-1

By:

Shuai Cheng Li

Publication type:

Article

Probabilistic grammatical model for helix-helix contact site classification.

Published in:

Algorithms for Molecular Biology, 2013, v. 8, n. 1, p. 2, doi. 10.1186/1748-7188-8-31

By:

Dyrka, Witold;
Nebel, Jean-Christophe;
Kotulska, Malgorzata

Publication type:

Article