Works matching IS 17487188 AND DT 2012 AND VI 7 AND IP 1

Results: 36

A polynomial time algorithm for calculating the probability of a ranked gene tree given a species tree.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 1, doi. 10.1186/1748-7188-7-7

By:

Stadler, Tanja;
Degnan, James H.

Publication type:

Article

The space of phylogenetic mixtures for equivariant models.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 1, doi. 10.1186/1748-7188-7-33

By:

Casanellas, Marta;
Fernández-Sánchez, Jesús;
Kedzierska, Anna M.

Publication type:

Article

Wrapper-based selection of genetic features in genome-wide association studies through fast matrix operations.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 1, doi. 10.1186/1748-7188-7-11

By:

Pahikkala, Tapio;
Okser, Sebastian;
Airola, Antti;
Salakoski, Tapio;
Aittokallio, Tero

Publication type:

Article

Gene tree correction for reconciliation and species tree inference.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 1, doi. 10.1186/1748-7188-7-31

By:

Swenson, Krister M.;
Doroftei, Andrea;
El-Mabrouk, Nadia

Publication type:

Article

Direct vs 2-stage approaches to structured motif finding.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 1, doi. 10.1186/1748-7188-7-20

By:

Federico, Maria;
Leoncini, Mauro;
Montangero, Manuela;
Valente, Paolo

Publication type:

Article

On the group theoretical background of assigning stepwise mutations onto phylogenies.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 36, doi. 10.1186/1748-7188-7-36

By:

Fischer, Mareike;
Klaere, Steffen;
Minh Anh Thi Nguyen;
von Haeseler, Arndt

Publication type:

Article

Invariant based quartet puzzling.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 35, doi. 10.1186/1748-7188-7-35

By:

Rusinko, Joseph P.;
Hipp, Brian

Publication type:

Article

Alignment-free phylogeny of whole genomes using underlying subwords.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 34, doi. 10.1186/1748-7188-7-34

By:

Comin, Matteo;
Verzotto, Davide

Publication type:

Article

Towards a practical O(n log n) phylogeny algorithm.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 32, doi. 10.1186/1748-7188-7-32

By:

Truszkowski, Jakub;
Yanqi Hao;
Brown, Daniel G.

Publication type:

Article

Adaptive efficient compression of genomes.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 30, doi. 10.1186/1748-7188-7-30

By:

Wandelt, Sebastian;
Leser, Ulf

Publication type:

Article

Distributional fold change test -- a statistical approach for detecting differential expression in microarray experiments.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 29, doi. 10.1186/1748-7188-7-29

By:

Farztdinov, Vadim;
McDyer, Fionnuala

Publication type:

Article

On the combinatorics of sparsification.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 28, doi. 10.1186/1748-7188-7-28

By:

Huang, Fenix W. D.;
Reidys, Christian M.

Publication type:

Article

Separating metagenomic short reads into genomes via clustering.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 27, doi. 10.1186/1748-7188-7-27

By:

Tanaseichuk, Olga;
Borneman, James;
Tao Jiang

Publication type:

Article

Constructing perfect phylogenies and proper triangulations for three-state characters.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 26, doi. 10.1186/1748-7188-7-26

By:

Gysel, Rob;
Lam, Fumei;
Gusfield, Dan

Publication type:

Article

Finding driver pathways in cancer: models and algorithms.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 23, doi. 10.1186/1748-7188-7-23

By:

Vandin, Fabio;
Upfal, Eli;
Raphael, Benjamin J.

Publication type:

Article

Stochastic errors vs. modeling errors in distance based phylogenetic reconstructions.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 22, doi. 10.1186/1748-7188-7-22

By:

Doerr, Daniel;
Gronau, Ilan;
Moran, Shlomo;
Yavneh, Irad

Publication type:

Article

Sampling solution traces for the problem of sorting permutations by signed reversals.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 18, doi. 10.1186/1748-7188-7-18

By:

Baudet, Christian;
Dias, Zanoni;
Sagot, Marie-France

Publication type:

Article

Parsimonious reconstruction of network evolution.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 25, doi. 10.1186/1748-7188-7-25

By:

Patro, Rob;
Sefer, Emre;
Malin, Justin;
Marçais, Guillaume;
Navlakha, Saket;
Kingsford, Carl

Publication type:

Article

Bootstrapping phylogenies inferred from rearrangement data.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 21, doi. 10.1186/1748-7188-7-21

By:

Yu Lin;
Vaibhav Rajan;
Moret, Bernard M.E.

Publication type:

Article

Getting DNA copy numbers without control samples.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 19, doi. 10.1186/1748-7188-7-19

By:

Ortiz-Estevez, Maria;
Aramburu, Ander;
Rubio, Angel

Publication type:

Article

Efficient procedures for the numerical simulation of mid-size RNA kinetics.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 24, doi. 10.1186/1748-7188-7-24

By:

Aviram, Iddo;
Veltman, Ilia;
Churkin, Alexander;
Barash, Danny

Publication type:

Article

Analysis of Metabolic Subnetworks by Flux Cone Projection.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 17, doi. 10.1186/1748-7188-7-17
Publication type:: Article

Fast structure similarity searches among protein models: efficient clustering of protein fragments.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 16, doi. 10.1186/1748-7188-7-16
Publication type:: Article

Ubiquity of synonymity: almost all large binary trees are not uniquely identified by their spectra or their immanantal polynomials.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 14, doi. 10.1186/1748-7188-7-14
Publication type:: Article

Tree-average distances on certain phylogenetic networks have their weights uniquely determined.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 13, doi. 10.1186/1748-7188-7-13
Publication type:: Article

Fractal MapReduce decomposition of sequence alignment.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 12, doi. 10.1186/1748-7188-7-12
Publication type:: Article

Pattern matching through Chaos Game Representation: bridging numerical and discrete data structures for biological sequence analysis.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 10, doi. 10.1186/1748-7188-7-10
Publication type:: Article

Invariants and Other Structural Properties of Biochemical Models as a Constraint Satisfaction Problem.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 15, doi. 10.1186/1748-7188-7-15
Publication type:: Article

Maximum Parsimony on Phylogenetic networks.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 9, doi. 10.1186/1748-7188-7-9
Publication type:: Article

Reconciling taxonomy and phylogenetic inference: formalism and algorithms for describing discord and inferring taxonomic roots.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 8, doi. 10.1186/1748-7188-7-8
Publication type:: Article

Computing evolutionary distinctiveness indices in large scale analysis.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 6, doi. 10.1186/1748-7188-7-6
Publication type:: Article

A normalization strategy for comparing tag count data.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 5, doi. 10.1186/1748-7188-7-5
Publication type:: Article

QTL/microarray approach using pathway information.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 1, doi. 10.1186/1748-7188-7-1
Publication type:: Article

TS-AMIR: a topology string alignment method for intensive rapid protein structure comparison.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 4, doi. 10.1186/1748-7188-7-4
Publication type:: Article

A strand specific high resolution normalization method for chip-sequencing data employing multiple experimental control measurements.

Published in:

Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 1, doi. 10.1186/1748-7188-7-2

By:

Enroth, Stefan;
Andersson, Claes R.;
Andersson, Robin;
Wadelius, Claes;
Gustafsson, Mats G.;
Komorowski, Jan

Publication type:

Article

MRL and SuperFine+MRL: new supertree methods.

Published in:: Algorithms for Molecular Biology, 2012, v. 7, n. 1, p. 3, doi. 10.1186/1748-7188-7-3
Publication type:: Article