Works matching IS 1746-4811 AND VI 12 AND DT 2016

Results: 51

Chlorophyll a fluorescence, under half of the adaptive growth-irradiance, for high-throughput sensing of leaf-water deficit in Arabidopsis thaliana accessions.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0145-3

By:

Mishra, Kumud B.;
Mishra, Anamika;
Novotná, Kateřina;
Rapantová, Barbora;
Hodaňová, Petra;
Urban, Otmar;
Klem, Karel

Publication type:

Article

Protocol: a fast, comprehensive and reproducible one-step extraction method for the rapid preparation of polar and semi-polar metabolites, lipids, proteins, starch and cell wall polymers from a single sample.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0146-2

By:

Salem, Mohamed A.;
Jüppner, Jessica;
Bajdzienko, Krzysztof;
Giavalisco, Patrick

Publication type:

Article

Measures for interoperability of phenotypic data: minimum information requirements and formatting.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0144-4

By:

Ćwiek‑Kupczyńska, Hanna;
Altmann, Thomas;
Arend, Daniel;
Arnaud, Elizabeth;
Chen, Dijun;
Cornut, Guillaume;
Fiorani, Fabio;
Frohmberg, Wojciech;
Junker, Astrid;
Klukas, Christian;
Lange, Matthias;
Mazurek, Cezary;
Nafissi, Anahita;
Neveu, Pascal;
van Oeveren, Jan;
Pommier, Cyril;
Poorter, Hendrik;
Rocca-Serra, Philippe;
Sansone, Susanna-Assunta;
Scholz, Uwe

Publication type:

Article

A rapid and cost-effective fluorescence detection in tube (FDIT) method to analyze protein phosphorylation.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0143-5

By:

Xiao Jin;
Jin-Ying Gou

Publication type:

Article

UV crosslinked mRNA-binding proteins captured from leaf mesophyll protoplasts.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0142-6

By:

Zhicheng Zhang;
Boonen, Kurt;
Ferrari, Piero;
Schoofs, Liliane;
Janssens, Ewald;
Rolland, Filip;
Geuten, Koen;
van Noort, Vera

Publication type:

Article

Infiltration-RNAseq: transcriptome profiling of Agrobacterium-mediated infiltration of transcription factors to discover gene function and expression networks in plants.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0141-7

By:

Bond, Donna M.;
Albert, Nick W.;
Lee, Robyn H.;
Gillard, Gareth B.;
Brown, Chris M.;
Hellens, Roger P.;
Macknight, Richard C.

Publication type:

Article

RADIX: rhizoslide platform allowing high throughput digital image analysis of root system expansion.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0140-8

By:

Le Marié, Chantal;
Kirchgessner, Norbert;
Flütsch, Patrick;
Pfeifer, Johannes;
Walter, Achim;
Hund, Andreas

Publication type:

Article

A method for detecting single mRNA molecules in Arabidopsis thaliana.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0114-x

By:

Duncan, Susan;
Olsson, Tjelvar S. G.;
Hartley, Matthew;
Dean, Caroline;
Rosa, Stefanie

Publication type:

Article

Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0139-1

By:

Guo-Qian Yang;
Yun-Mei Chen;
Jin-Peng Wang;
Cen Guo;
Lei Zhao;
Xiao-Yan Wang;
Ying Guo;
Li Li;
De-Zhu Li;
Zhen-Hua Guo

Publication type:

Article

Detecting N-myristoylation and S-acylation of host and pathogen proteins in plants using click chemistry.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0138-2

By:

Boyle, Patrick C.;
Schwizer, Simon;
Hind, Sarah R.;
Kraus, Christine M.;
De la Torre Diaz, Susana;
Bin He;
Martin, Gregory B.

Publication type:

Article

In situ hybridization for the detection of rust fungi in paraffin embedded plant tissue sections.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0137-3

By:

Ellison, Mitchell A.;
McMahon, Michael B.;
Bonde, Morris R.;
Palmer, Cristi L.;
Luster, Douglas G.

Publication type:

Article

"Noisy beets": impact of phenotyping errors on genomic predictions for binary traits in Beta vulgaris.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0136-4

By:

Biscarini, Filippo;
Nazzicari, Nelson;
Broccanello, Chiara;
Stevanato, Piergiorgio;
Simone Marini

Publication type:

Article

An automated, cost-effective and scalable, flood-and-drain based root phenotyping system for cereals.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0135-5

By:

Slota, Michal;
Maluszynski, Miroslaw;
Szarejko, Iwona

Publication type:

Article

Application of unmanned aerial systems for high throughput phenotyping of large wheat breeding nurseries.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0134-6

By:

Haghighattalab, Atena;
Pérez, Lorena González;
Mondal, Suchismita;
Singh, Daljit;
Schinstock, Dale;
Rutkoski, Jessica;
Ortiz-Monasterio, Ivan;
Singh, Ravi Prakash;
Goodin, Douglas;
Poland, Jesse

Publication type:

Article

Benchmarking electrical methods for rapid estimation of root biomass.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0133-7

By:

Postic, François;
Doussan, Claude

Publication type:

Article

High-throughput phenotyping of lateral expansion and regrowth of spaced Lolium perenne plants using on-field image analysis.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0132-8

By:

Lootens, Peter;
Ruttink, Tom;
Rohde, Antje;
Combes, Didier;
Barre, Philippe;
Roldán-Ruiz, Isabel

Publication type:

Article

RhizoTubes as a new tool for high throughput imaging of plant root development and architecture: test, comparison with pot grown plants and validation.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0131-9

By:

Jeudy, Christian;
Adrian, Marielle;
Baussard, Christophe;
Bernard, Céline;
Bernaud, Eric;
Bourion, Virginie;
Busset, Hughes;
Cabrera-Bosquet, Llorenç;
Cointault, Frédéric;
Han, Simeng;
Lamboeuf, Mickael;
Moreau, Delphine;
Pivato, Barbara;
Prudent, Marion;
Trouvelot, Sophie;
Hoai Nam Truong;
Vernoud, Vanessa;
Voisin, Anne-Sophie;
Wipf, Daniel;
Salon, Christophe

Publication type:

Article

High-throughput quantification of more than 100 primary- and secondary-metabolites, and phytohormones by a single solid-phase extraction based sample preparation with analysis by UHPLC-HESI-MS/MS.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0130-x

By:

Schäfer, Martin;
Brütting, Christoph;
Baldwin, Ian T.;
Kallenbach, Mario

Publication type:

Article

Solanum venturii, a suitable model system for virus-induced gene silencing studies in potato reveals StMKK6 as an important player in plant immunity.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0129-3

By:

Dobnik, David;
Lazar, Ana;
Stare, Tjaša;
Gruden, Kristina;
Vleeshouwers, Vivianne G. A. A.;
Žel, Jana

Publication type:

Article

A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0128-4

By:

Goralski, Michal;
Sobieszczanska, Paula;
Obrepalska-Steplowska, Aleksandra;
Swiercz, Aleksandra;
Zmienko, Agnieszka;
Figlerowicz, Marek

Publication type:

Article

Protocol: a method to study the direct reprogramming of lateral root primordia to fertile shoots.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0127-5

By:

Kareem, Abdul;
Radhakrishnan, Dhanya;
Xin Wang;
Bagavathiappan, Subhikshaa;
Trivedi, Zankhana B.;
Kaoru Sugimoto;
Jian Xu;
Mähönen, Ari Pekka;
Prasad, Kalika

Publication type:

Article

ExactSearch: a web-based plant motif search tool.

Published in:

2016

By:

Gunasekara, Chathura;
Subramanian, Avinash;
Avvari, Janaki Venkata Ram Kumar;
Bin Li;
Su Chen;
Hairong Wei

Publication type:

Product Review

An improved procedure for isolation of high-quality RNA from nematode-infected Arabidopsis roots through laser capture microdissection.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0123-9

By:

Anjam, Muhammad Shahzad;
Ludwig, Yvonne;
Hochholdinger, Frank;
Miyaura, Chisato;
Inada, Masaki;
Siddique, Shahid;
Grundler, Florian M. W.

Publication type:

Article

Efficient multiplex mutagenesis by RNA-guided Cas9 and its use in the characterization of regulatory elements in the AGAMOUS gene.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0125-7

By:

Wenhao Yan;
Dijun Chen;
Kaufmann, Kerstin

Publication type:

Article

The utility of flow sorting to identify chromosomes carrying a single copy transgene in wheat.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0124-8

By:

Cápal, Petr;
Takashi R. Endo;
Vrána, Jan;
Kubaláková, Marie;
Karafiátová, Miroslava;
Komínková, Eva;
Mora-Ramirez, Isabel;
Weschke, Winfriede;
Doležel, Jaroslav

Publication type:

Article

Protocol: optimisation of a grafting protocol for oilseed rape (Brassica napus) for studying long-distance signalling.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0122-x

By:

Ostendorp, Anna;
Pahlow, Steffen;
Deke, Jennifer;
Thieß, Melanie;
Kehr, Julia

Publication type:

Article

Protocol: optimisation of a grafting protocol for oilseed rape (Brassica napus) for studying long-distance signalling.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0122-x

By:

Ostendorp, Anna;
Pahlow, Steffen;
Deke, Jennifer;
Thieß, Melanie;
Kehr, Julia

Publication type:

Article

Selection of reference genes for diurnal and developmental time-course real-time PCR expression analyses in lettuce.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0121-y

By:

Sgamma, Tiziana;
Pape, Judith;
Massiah, Andrea;
Jackson, Stephen

Publication type:

Article

Use of the non-radioactive SUnSET method to detect decreased protein synthesis in proteasome inhibited Arabidopsis roots.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0120-z

By:

Van Hoewyk, Doug

Publication type:

Article

Protocol: transient expression system for functional genomics in the tropical tree Theobroma cacao L.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0119-5

By:

Fister, Andrew S.;
Zi Shi;
Yufan Zhang;
Helliwell, Emily E.;
Maximova, Siela N.;
Guiltinan, Mark J.

Publication type:

Article

A simple test for the cleavage activity of customized endonucleases in plants.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0118-6

By:

Budhagatapalli, Nagaveni;
Schedel, Sindy;
Gurushidze, Maia;
Pencs, Stefanie;
Hiekel, Stefan;
Rutten, Twan;
Kusch, Stefan;
Morbitzer, Robert;
Lahaye, Thomas;
Panstruga, Ralph;
Kumlehn, Jochen;
Hensel, Goetz

Publication type:

Article

A rapid phenotyping method for adult plant resistance to leaf rust in wheat.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0117-7

By:

Riaz, Adnan;
Periyannan, Sambasivam;
Aitken, Elizabeth;
Hickey, Lee

Publication type:

Article

Simultaneous knockdown of six non-family genes using a single synthetic RNAi fragment in Arabidopsis thaliana.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0116-8

By:

Czarnecki, Olaf;
Bryan, Anthony C.;
Jawdy, Sara S.;
Xiaohan Yang;
Zong-Ming Cheng;
Jin-Gui Chen;
Tuskan, Gerald A.

Publication type:

Article

LEAFDATA: a literature-curated database for Arabidopsis leaf development.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0115-9

By:

Szakonyi, Dóra

Publication type:

Article

Phenomics for photosynthesis, growth and reflectance in Arabidopsis thaliana reveals circadian and long-term fluctuations in heritability.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0113-y

By:

Flood, Pádraic J.;
Kruijer, Willem;
Schnabel, Sabine K.;
van der Schoor, Rob;
Jalink, Henk;
Snel, Jan F. H.;
Harbinson, Jeremy;
Aarts, Mark G. M.

Publication type:

Article

Identification of an attenuated barley stripe mosaic virus for the virus-induced gene silencing of pathogenesis-related wheat genes.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0112-z

By:

Buhrow, Leann M.;
Clark, Shawn M.;
Loewen, Michele C.

Publication type:

Article

Gene targeting and transgene stacking using intra genomic homologous recombination in plants.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0111-0

By:

Kumar, Sandeep;
Barone, Pierluigi;
Smith, Michelle

Publication type:

Article

A modular toolbox for gRNA-Cas9 genome engineering in plants based on the GoldenBraid standard.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0101-2

By:

Vazquez-Vilar, Marta;
Bernabé-Orts, Joan Miquel;
Ziarsolo, Pello;
Blanca, Jose;
Granell, Antonio;
Orzaez, Diego;
Fernandez-del-Carmen, Asun

Publication type:

Article

Terrestrial 3D laser scanning to track the increase in canopy height of both monocot and dicot crop species under field conditions.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0109-7

By:

Friedli, Michael;
Kirchgessner, Norbert;
Grieder, Christoph;
Liebisch, Frank;
Mannale, Michael;
Walter, Achim

Publication type:

Article

Revolutionizing plant biology: multiple ways of genome engineering by CRISPR/Cas.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0103-0

By:

Schiml, Simon;
Puchta, Holger

Publication type:

Article

Erratum to: Use of diffusion magnetic resonance imaging to correlate the developmental changes in grape berry tissue structure with water diffusion patterns.

Published in:: 2016
Publication type:: Correction Notice

Meeting report: GARNet/OpenPlant CRISPR-Cas workshop.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0104-z

By:

Parry, Geraint;
Patron, Nicola;
Bastow, Ruth;
Matthewman, Colette

Publication type:

Article

An improved microtiter plate assay to monitor the oxidative burst in monocot and dicot plant cell suspension cultures.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0110-1

By:

Melcher, Rebecca L. J.;
Moerschbacher, Bruno M.

Publication type:

Article

Inoculation insensitive promoters for cell type enriched gene expression in legume roots and nodules.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0105-y

By:

Gavrilovic, Srdjan;
Zhe Yan;
Jurkiewicz, Anna M.;
Stougaard, Jens;
Markmann, Katharina

Publication type:

Article

A novel method to characterize silica bodies in grasses.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0108-8

By:

Dabney III, Clemon;
Ostergaard, Jason;
Watkins, Eric;
Changbin Chen

Publication type:

Article

An efficient approach to BAC based assembly of complex genomes.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0107-9

By:

Visendi, Paul;
Berkman, Paul J.;
Hayashi, Satomi;
Golicz, Agnieszka A.;
Bayer, Philipp E.;
Ruperao, Pradeep;
Hurgobin, Bhavna;
Montenegro, Juan;
Chan, Chon-Kit Kenneth;
Staňková, Helena;
Batley, Jacqueline;
Šimková, Hana;
Doležel, Jaroslav;
Edwards, David

Publication type:

Article

Automated video tracking of thrips behavior to assess host-plant resistance in multiple parallel two-choice setups.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0102-1

By:

Thoen, Manus P. M.;
Kloth, Karen J.;
Wiegers, Gerrie L.;
Krips, Olga E.;
Noldus, Lucas P. J. J.;
Dicke, Marcel;
Jongsma, Maarten A.

Publication type:

Article

Direct derivation of maize plant and crop height from low-cost time-of-flight camera measurements.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0150-6

By:

Hämmerle, Martin;
Höfle, Bernhard

Publication type:

Article

Editing of the urease gene by CRISPR-Cas in the diatom Thalassiosira pseudonana.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0148-0

By:

Hopes, Amanda;
Nekrasov, Vladimir;
Kamoun, Sophien;
Mock, Thomas

Publication type:

Article

A DNA-based real-time PCR assay for robust growth quantification of the bacterial pathogen Pseudomonas syringae on Arabidopsis thaliana.

Published in:

Plant Methods, 2016, v. 12, p. 1, doi. 10.1186/s13007-016-0149-z

By:

Ross, Annegret;
Somssich, Imre E.

Publication type:

Article