Works matching IS 17444292 AND DT 2013 AND VI 9 AND IP 1

Results: 84

Erratum To: Apoptosis and other immune biomarkers predict influenza vaccine responsiveness.

Published in:

2013

By:

Furman, David;
Jojic, Vladimir;
Kidd, Brian;
Shen‐Orr, Shai;
Price, Jordan;
Jarrell, Justin;
Tse, Tiffany;
Huang, Huang;
Lund, Peder;
Maecker, Holden T;
Utz, Paul J;
Dekker, Cornelia L;
Koller, Daphne;
Davis, Mark M

Publication type:

Correction Notice

Apoptosis and other immune biomarkers predict influenza vaccine responsiveness.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.15

By:

Furman, David;
Jojic, Vladimir;
Kidd, Brian;
Shen‐Orr, Shai;
Price, Jordan;
Jarrell, Justin;
Tse, Tiffany;
Huang, Huang;
Lund, Peder;
Maecker, Holden T;
Utz, Paul J;
Dekker, Cornelia L;
Koller, Daphne;
Davis, Mark M

Publication type:

Article

RNAi screening reveals a large signaling network controlling the Golgi apparatus in human cells.

Published in:

2013

By:

Chia, Joanne;
Goh, Germaine;
Racine, Victor;
Ng, Susanne;
Kumar, Pankaj;
Bard, Frederic

Publication type:

Correction Notice

Interaction proteome of human Hippo signaling: modular control of the co‐activator YAP1.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1002/msb.201304750

By:

Hauri, Simon;
Wepf, Alexander;
van Drogen, Audrey;
Varjosalo, Markku;
Tapon, Nic;
Aebersold, Ruedi;
Gstaiger, Matthias

Publication type:

Article

Timescales and bottlenecks in miRNA‐dependent gene regulation.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.68

By:

Hausser, Jean;
Syed, Afzal Pasha;
Selevsek, Nathalie;
van Nimwegen, Erik;
Jaskiewicz, Lukasz;
Aebersold, Ruedi;
Zavolan, Mihaela

Publication type:

Article

Transcriptional regulation is insufficient to explain substrate‐induced flux changes in Bacillus subtilis.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.66

By:

Chubukov, Victor;
Uhr, Markus;
Le Chat, Ludovic;
Kleijn, Roelco J.;
Jules, Matthieu;
Link, Hannes;
Aymerich, Stephane;
Stelling, Jörg;
Sauer, Uwe

Publication type:

Article

A pharmaco‐epistasis strategy reveals a new cell size controlling pathway in yeast.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.60

By:

Moretto, Fabien;
Sagot, Isabelle;
Daignan-Fornier, Bertrand;
Pinson, Benoît

Publication type:

Article

Cell size control is sirtuin(ly) exciting.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.64

By:

Wright, Jill;
Schneider, Brandt L.

Publication type:

Article

Promoter decoding of transcription factor dynamics.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.63

By:

Moody, Amie D.;
Batchelor, Eric

Publication type:

Article

Root systems analysis branches out.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.51

By:

Palme, Klaus;
Teale, William

Publication type:

Article

Natural sequence variants of yeast environmental sensors confer cell‐to‐cell expression variability.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.53

By:

Fehrmann, Steffen;
Bottin‐Duplus, Hélène;
Leonidou, Andri;
Mollereau, Esther;
Barthelaix, Audrey;
Wu Wei;
Steinmetz, Lars M.;
Yvert, Gaël

Publication type:

Article

Targeted proteomics reveals strain‐specific changes in the mouse insulin and central metabolic pathways after a sustained high‐fat diet.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.36

By:

Sabidó, Eduard;
Yibo Wu;
Bautista, Lucia;
Porstmann, Thomas;
Ching‐Yun Chang;
Vitek, Olga;
Stoffel, Markus;
Aebersold, Ruedi

Publication type:

Article

In vitro integration of ribosomal RNA synthesis, ribosome assembly, and translation.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.31

By:

Jewett, Michael C.;
Fritz, Brian R.;
Timmerman, Laura E.;
Church, George M.

Publication type:

Article

Efficient translation initiation dictates codon usage at gene start.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.32

By:

Bentele, Kajetan;
Saffert, Paul;
Rauscher, Robert;
Ignatova, Zoya;
Blüthgen, Nils

Publication type:

Article

Dissecting a complex chemical stress: chemogenomic profiling of plant hydrolysates.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.30

By:

Skerker, Jeffrey M.;
Leon, Dacia;
Price, Morgan N.;
Mar, Jordan S.;
Tarjan, Daniel R.;
Wetmore, Kelly M.;
Deutschbauer, Adam M.;
Baumohl, Jason K.;
Bauer, Stefan;
Ibáñez, Ana B.;
Mitchell, Valerie D.;
Wu, Cindy H.;
Ping Hu;
Hazen, Terry;
Arkin, Adam P.

Publication type:

Article

The selective control of glycolysis, gluconeogenesis and glycogenesis by temporal insulin patterns.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.19

By:

Rei Noguchi;
Hiroyuki Kubota;
Katsuyuki Yugi;
Yu Toyoshima;
Yasunori Komori;
Tomoyoshi Soga;
Shinya Kuroda

Publication type:

Article

Systematic identification of proteins that elicit drug side effects.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.10

By:

Kuhn, Michael;
Banchaabouchi, Mumna Al;
Campillos, Monica;
Jensen, Lars Juhl;
Gross, Cornelius;
Gavin, Anne-Claude;
Bork, Peer

Publication type:

Article

Characterization of drug-induced transcriptional modules: towards drug repositioning and functional understanding.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.20

By:

Iskar, Murat;
Zeller, Georg;
Blattmann, Peter;
Campillos, Monica;
Kuhn, Michael;
Kaminska, Katarzyna H.;
Runz, Heiko;
Gavin, Anne-Claude;
Pepperkok, Rainer;
Noort, Vera van;
Bork, Peer

Publication type:

Article

Indirect and suboptimal control of gene expression is widespread in bacteria.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.16

By:

Price, Morgan N.;
Deutschbauer, Adam M.;
Skerker, Jeffrey M.;
Wetmore, Kelly M.;
Ruths, Troy;
Mar, Jordan S.;
Kuehl, Jennifer V.;
Wenjun Shao;
Arkin, Adam P.

Publication type:

Article

Dissecting specific and global transcriptional regulation of bacterial gene expression.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.14

By:

Gerosa, Luca;
Kochanowski, Karl;
Heinemann, Matthias;
Sauer, Uwe

Publication type:

Article

Global remodelling of cellular microenvironment due to loss of collagen VII.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.17

By:

Küttner, Victoria;
Mack, Claudia;
Rigbolt, Kristoffer T. G.;
Kern, Johannes S.;
Schilling, Oliver;
Busch, Hauke;
Bruckner-Tuderman, Leena;
Dengjel, Jörn

Publication type:

Article

Increasing population growth by asymmetric segregation of a limiting resource during cell division.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.13

By:

Avraham, Nurit;
Soifer, Ilya;
Carmi, Miri;
Barkai, Naama

Publication type:

Article

Plant stem cell maintenance involves direct transcriptional repression of differentiation program.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.8

By:

Yadav, Ram Kishor;
Perales, Mariano;
Gruel, Jérémy;
Ohno, Carolyn;
Heisler, Marcus;
Girke, Thomas;
Jönsson, Henrik;
Reddy, G. Venugopala

Publication type:

Article

Dissecting the energy metabolism in Mycoplasma pneumoniae through genome-scale metabolic modeling.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.6

By:

Wodke, Judith A. H.;
Puchałka, Jacek;
Lluch-Senar, Maria;
Marcos, Josep;
Yus, Eva;
Godinho, Miguel;
Gutiérrez-Gallego, Ricardo;
Martins dos Santos, Vitor A. P.;
Serrano, Luis;
Klipp, Edda;
Maier, Tobias

Publication type:

Article

Temporal system-level organization of the switch from glycolytic to gluconeogenic operation in yeast.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.11

By:

Zampar, Guillermo G.;
Kümmel, Anne;
Ewald, Jennifer;
Jol, Stefan;
Niebel, Bastian;
Picotti, Paola;
Aebersold, Ruedi;
Sauer, Uwe;
Zamboni, Nicola;
Heinemann, Matthias

Publication type:

Article

Epigenetic epistatic interactions constrain the evolution of gene expression.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.2

By:

Park, Solip;
Lehner, Ben

Publication type:

Article

Evolutionary potential, cross-stress behavior and the genetic basis of acquired stress resistance in Escherichia coli.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.76

By:

Dragosits, Martin;
Mozhayskiy, Vadim;
Quinones-Soto, Semarhy;
Park, Jiyeon

Publication type:

Article

Reading and writing omes.

Published in:: Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.75
Publication type:: Article

High-throughput sequencing for biology and medicine.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.61

By:

Soon, Wendy Weijia;
Hariharan, Manoj;
Snyder, Michael P.

Publication type:

Article

Autonomous bacterial localization and gene expression based on nearby cell receptor density.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.71

By:

Hsuan-Chen Wu;
Chen-Yu Tsao;
Quan, David N.;
Yi Cheng;
Servinsky, Matthew D.;
Carter, Karen K.;
Jee, Kathleen J.;
Terrell, Jessica L.;
Zargar, Amin;
Rubloff, Gary W.;
Payne, Gregory F.;
Valdes, James J.;
Bentley, William E.

Publication type:

Article

An in vivo control map for the eukaryotic mRNA translation machinery.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.73

By:

Firczuk, Helena;
Kannambath, Shichina;
Pahle, Jürgen;
Claydon, Amy;
Beynon, Robert;
Duncan, John;
Westerhoff, Hans;
Mendes, Pedro;
McCarthy, John EG

Publication type:

Article

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.70

By:

Berthoumieux, Sara;
de Jong, Hidde;
Pinel, Corinne;
Ranquet, Caroline;
Ropers, Delphine;
Geiselmann, Johannes

Publication type:

Article

Programming biological models in Python using PySB.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.1

By:

Lopez, Carlos F;
Muhlich, Jeremy L;
Bachman, John A;
Sorger, Peter K

Publication type:

Article

Properties of cell death models calibrated and compared using Bayesian approaches.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.69

By:

Eydgahi, Hoda;
Chen, William W;
Muhlich, Jeremy L;
Vitkup, Dennis;
Tsitsiklis, John N;
Sorger, Peter K

Publication type:

Article

Genome-scale engineering for systems and synthetic biology.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.66

By:

Esvelt, Kevin M;
Wang, Harris H

Publication type:

Article

Systematic analysis of somatic mutations in phosphorylation signaling predicts novel cancer drivers.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.68

By:

Reimand, Jüri;
Bader, Gary D

Publication type:

Article

Widespread splicing changes in human brain development and aging.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.67

By:

Mazin, Pavel;
Jieyi Xiong;
Xiling Liu;
Zheng Yan;
Xiaoyu Zhang;
Mingshuang Li;
Liu He;
Somel, Mehmet;
Yuan Yuan;
Yi-Ping Phoebe Chen;
Na Li;
Yuhui Hu;
Ning Fu;
Zhibin Ning;
Rong Zeng;
Hongyi Yang;
Wei Chen;
Gelfand, Mikhail;
Khaitovich, Philipp

Publication type:

Article

Deconvolving the roles of Wnt ligands and receptors in sensing and amplification.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2012.64

By:

Tan, Rui Zhen;
Ji, Ni;
Mentink, Remco A;
Korswagen, Hendrik C;
van Oudenaarden, Alexander

Publication type:

Article

Evolution and functional cross-talk of protein post-translational modifications.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1002/msb.201304521

By:

Beltrao, Pedro;
Bork, Peer;
Krogan, Nevan J.;
Noort, Vera

Publication type:

Article

Glutamine-driven oxidative phosphorylation is a major ATP source in transformed mammalian cells in both normoxia and hypoxia.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.65

By:

Fan, Jing;
Kamphorst, Jurre J;
Mathew, Robin;
Chung, Michelle K;
White, Eileen;
Shlomi, Tomer;
Rabinowitz, Joshua D

Publication type:

Article

Imaging the transcriptome.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.67

By:

Lionnet, Timothée

Publication type:

Article

Metabolic reconstruction identifies strain-specific regulation of virulence in Toxoplasma gondii.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.62

By:

Song, Carl;
Chiasson, Melissa A;
Nursimulu, Nirvana;
Hung, Stacy S;
Wasmuth, James;
Grigg, Michael E;
Parkinson, John

Publication type:

Article

Perturbation of the mutated EGFR interactome identifies vulnerabilities and resistance mechanisms.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.61

By:

Li, Jiannong;
Bennett, Keiryn;
Stukalov, Alexey;
Fang, Bin;
Zhang, Guolin;
Yoshida, Takeshi;
Okamoto, Isamu;
Kim, Jae‐Young;
Song, Lanxi;
Bai, Yun;
Qian, Xiaoning;
Rawal, Bhupendra;
Schell, Michael;
Grebien, Florian;
Winter, Georg;
Rix, Uwe;
Eschrich, Steven;
Colinge, Jacques;
Koomen, John;
Superti‐Furga, Giulio

Publication type:

Article

Promoter decoding of transcription factor dynamics involves a trade-off between noise and control of gene expression.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.56

By:

Hansen, Anders S;
O'Shea, Erin K

Publication type:

Article

Design of orthogonal genetic switches based on a crosstalk map of σs, anti-σs, and promoters.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.58

By:

Rhodius, Virgil A;
Segall‐Shapiro, Thomas H;
Sharon, Brian D;
Ghodasara, Amar;
Orlova, Ekaterina;
Tabakh, Hannah;
Burkhardt, David H;
Clancy, Kevin;
Peterson, Todd C;
Gross, Carol A;
Voigt, Christopher A

Publication type:

Article

Promoters maintain their relative activity levels under different growth conditions.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.59

By:

Keren, Leeat;
Zackay, Ora;
Lotan‐Pompan, Maya;
Barenholz, Uri;
Dekel, Erez;
Sasson, Vered;
Aidelberg, Guy;
Bren, Anat;
Zeevi, Danny;
Weinberger, Adina;
Alon, Uri;
Milo, Ron;
Segal, Eran

Publication type:

Article

Bacterial evolution of antibiotic hypersensitivity.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.57

By:

Lázár, Viktória;
Pal Singh, Gajinder;
Spohn, Réka;
Nagy, István;
Horváth, Balázs;
Hrtyan, Mónika;
Busa‐Fekete, Róbert;
Bogos, Balázs;
Méhi, Orsolya;
Csörgő, Bálint;
Pósfai, György;
Fekete, Gergely;
Szappanos, Balázs;
Kégl, Balázs;
Papp, Balázs;
Pál, Csaba

Publication type:

Article

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.43

By:

Péret, Benjamin;
Middleton, Alistair M;
French, Andrew P;
Larrieu, Antoine;
Bishopp, Anthony;
Njo, Maria;
Wells, Darren M;
Porco, Silvana;
Mellor, Nathan;
Band, Leah R;
Casimiro, Ilda;
Kleine‐Vehn, Jürgen;
Vanneste, Steffen;
Sairanen, Ilkka;
Mallet, Romain;
Sandberg, Göran;
Ljung, Karin;
Beeckman, Tom;
Benkova, Eva;
Friml, Jiří

Publication type:

Article

Apoptosis and other immune biomarkers predict influenza vaccine responsiveness.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.15

By:

Furman, David;
Jojic, Vladimir;
Kidd, Brian;
Shen‐Orr, Shai;
Price, Jordan;
Jarrell, Justin;
Tse, Tiffany;
Huang, Huang;
Lund, Peder;
Maecker, Holden T;
Utz, Paul J;
Dekker, Cornelia L;
Koller, Daphne;
Davis, Mark M

Publication type:

Article

Temporal control of self-organized pattern formation without morphogen gradients in bacteria.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.55

By:

Payne, Stephen;
Li, Bochong;
Cao, Yangxiaolu;
Schaeffer, David;
Ryser, Marc D;
You, Lingchong

Publication type:

Article