Works matching IS 17444292 AND DT 2012 AND VI 8 AND IP 1

Results: 67

Cross-talk between phosphorylation and lysine acetylation in a genome-reduced bacterium.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.4

By:

van Noort, Vera;
Seebacher, Jan;
Bader, Samuel;
Mohammed, Shabaz;
Vonkova, Ivana;
Betts, Matthew J;
Kühner, Sebastian;
Kumar, Runjun;
Maier, Tobias;
O'Flaherty, Martina;
Rybin, Vladimir;
Schmeisky, Arne;
Yus, Eva;
Stülke, Jörg;
Serrano, Luis;
Russell, Robert B;
Heck, Albert JR;
Bork, Peer;
Gavin, Anne‐Claude

Publication type:

Article

Global microRNA level regulation of EGFR-driven cell-cycle protein network in breast cancer.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2011.100

By:

Uhlmann, Stefan;
Mannsperger, Heiko;
Zhang, Jitao David;
Horvat, Emöke‐Ágnes;
Schmidt, Christian;
Küblbeck, Moritz;
Henjes, Frauke;
Ward, Aoife;
Tschulena, Ulrich;
Zweig, Katharina;
Korf, Ulrike;
Wiemann, Stefan;
Sahin, Özgür

Publication type:

Article

miRNAs versus oncogenes: the power of social networking.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.2

By:

Malumbres, Marcos

Publication type:

Article

Widespread translational control contributes to the regulation of Arabidopsis photomorphogenesis.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2011.97

By:

Liu, Ming‐Jung;
Wu, Szu‐Hsien;
Chen, Ho‐Ming;
Wu, Shu‐Hsing

Publication type:

Article

Bistability in feedback circuits as a byproduct of evolution of evolvability.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2011.98

By:

Kuwahara, Hiroyuki;
Soyer, Orkun S

Publication type:

Article

A mechanism for robust circadian timekeeping via stoichiometric balance.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.62

By:

Kim, Jae Kyoung;
Forger, Daniel B

Publication type:

Article

Targeted proteomics reveals compositional dynamics of 60S pre‐ribosomes after nuclear export.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.63

By:

Altvater, Martin;
Chang, Yiming;
Melnik, Andre;
Occhipinti, Laura;
Schütz, Sabina;
Rothenbusch, Ute;
Picotti, Paola;
Panse, Vikram Govind

Publication type:

Article

Altruistic cell death and collective drug resistance.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.60

By:

Carmona‐Fontaine, Carlos;
Xavier, Joao B

Publication type:

Article

d<sub>N</sub>/d<sub>S</sub> does not show positive selection drives separation of polar‐tropical SAR11 populations.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.58

By:

Luo, Haiwei;
Hughes, Austin L

Publication type:

Article

PLAU inferred from a correlation network is critical for suppressor function of regulatory T cells.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.56

By:

He, Feng;
Chen, Hairong;
Probst‐Kepper, Michael;
Geffers, Robert;
Eifes, Serge;
del Sol, Antonio;
Schughart, Klaus;
Zeng, An‐Ping;
Balling, Rudi

Publication type:

Article

Regulation of yeast central metabolism by enzyme phosphorylation.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.55

By:

Oliveira, Ana Paula;
Ludwig, Christina;
Picotti, Paola;
Kogadeeva, Maria;
Aebersold, Ruedi;
Sauer, Uwe

Publication type:

Article

A feel for systems.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.41

By:

Voit, Eberhard O;
Newstetter, Wendy C;
Kemp, Melissa L

Publication type:

Article

Systems‐based analysis of Arabidopsis leaf growth reveals adaptation to water deficit.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.39

By:

Baerenfaller, Katja;
Massonnet, Catherine;
Walsh, Sean;
Baginsky, Sacha;
Bühlmann, Peter;
Hennig, Lars;
Hirsch‐Hoffmann, Matthias;
Howell, Katharine A;
Kahlau, Sabine;
Radziejwoski, Amandine;
Russenberger, Doris;
Rutishauser, Dorothea;
Small, Ian;
Stekhoven, Daniel;
Sulpice, Ronan;
Svozil, Julia;
Wuyts, Nathalie;
Stitt, Mark;
Hilson, Pierre;
Granier, Christine

Publication type:

Article

Dissecting sources of quantitative gene expression pattern divergence between Drosophila species.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.35

By:

Wunderlich, Zeba;
Bragdon, Meghan D;
Eckenrode, Kelly B;
Lydiard‐Martin, Tara;
Pearl‐Waserman, Sivanne;
DePace, Angela H

Publication type:

Article

Deciphering a global network of functionally associated post‐translational modifications.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.31

By:

Minguez, Pablo;
Parca, Luca;
Diella, Francesca;
Mende, Daniel R;
Kumar, Runjun;
Helmer‐Citterich, Manuela;
Gavin, Anne‐Claude;
van Noort, Vera;
Bork, Peer

Publication type:

Article

Cells, shared memory and breaking the PTM code.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.33

By:

Creixell, Pau;
Linding, Rune

Publication type:

Article

Metabolic rewiring drives resistance to targeted cancer therapy.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.30

By:

Locasale, Jason W

Publication type:

Article

Global biogeography of SAR11 marine bacteria.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.28

By:

Brown, Mark V;
Lauro, Federico M;
DeMaere, Matthew Z;
Muir, Les;
Wilkins, David;
Thomas, Torsten;
Riddle, Martin J;
Fuhrman, Jed A;
Andrews‐Pfannkoch, Cynthia;
Hoffman, Jeffrey M;
McQuaid, Jeffrey B;
Allen, Andrew;
Rintoul, Stephen R;
Cavicchioli, Ricardo

Publication type:

Article

Effects of diet and development on the Drosophila lipidome.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.29

By:

Carvalho, Maria;
Sampaio, Julio L;
Palm, Wilhelm;
Brankatschk, Marko;
Eaton, Suzanne;
Shevchenko, Andrej

Publication type:

Article

Systems analysis of eleven rodent disease models reveals an inflammatome signature and key drivers.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.24

By:

Wang, I‐Ming;
Zhang, Bin;
Yang, Xia;
Zhu, Jun;
Stepaniants, Serguei;
Zhang, Chunsheng;
Meng, Qingying;
Peters, Mette;
He, Yudong;
Ni, Chester;
Slipetz, Deborah;
Crackower, Michael A;
Houshyar, Hani;
Tan, Christopher M;
Asante‐Appiah, Ernest;
O'Neill, Gary;
Jane Luo, Mingjuan;
Thieringer, Rolf;
Yuan, Jeffrey;
Chiu, Chi‐Sung

Publication type:

Article

Chromatin measurements reveal contributions of synthesis and decay to steady‐state mRNA levels.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.23

By:

Tippmann, Sylvia C;
Ivanek, Robert;
Gaidatzis, Dimos;
Schöler, Anne;
Hoerner, Leslie;
van Nimwegen, Erik;
Stadler, Peter F;
Stadler, Michael B;
Schübeler, Dirk

Publication type:

Article

INDI: a computational framework for inferring drug interactions and their associated recommendations.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.26

By:

Gottlieb, Assaf;
Stein, Gideon Y;
Oron, Yoram;
Ruppin, Eytan;
Sharan, Roded

Publication type:

Article

Signaling for death: tyrosine phosphorylation in the response to glucose deprivation.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.27

By:

Bryson, Bryan D;
White, Forest M

Publication type:

Article

A genomic bias for genotype–environment interactions in C. elegans.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.19

By:

Grishkevich, Vladislav;
Ben‐Elazar, Shay;
Hashimshony, Tamar;
Schott, Daniel H;
Hunter, Craig P;
Yanai, Itai

Publication type:

Article

Transcription start site associated RNAs in bacteria.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.16

By:

Yus, Eva;
Güell, Marc;
Vivancos, Ana P;
Chen, Wei‐Hua;
Lluch‐Senar, María;
Delgado, Javier;
Gavin, Anne‐Claude;
Bork, Peer;
Serrano, Luis

Publication type:

Article

Multi‐layered stochasticity and paracrine signal propagation shape the type‐I interferon response.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.17

By:

Rand, Ulfert;
Rinas, Melanie;
Schwerk, Johannes;
Nöhren, Gesa;
Linnes, Melanie;
Kröger, Andrea;
Flossdorf, Michael;
Kály‐Kullai, Kristóf;
Hauser, Hansjörg;
Höfer, Thomas;
Köster, Mario

Publication type:

Article

A dynamical model of the spindle position checkpoint.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.15

By:

Caydasi, Ayse Koca;
Lohel, Maiko;
Grünert, Gerd;
Dittrich, Peter;
Pereira, Gislene;
Ibrahim, Bashar

Publication type:

Article

Prediction and identification of sequences coding for orphan enzymes using genomic and metagenomic neighbours.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.13

By:

Yamada, Takuji;
Waller, Alison S;
Raes, Jeroen;
Zelezniak, Aleksej;
Perchat, Nadia;
Perret, Alain;
Salanoubat, Marcel;
Patil, Kiran R;
Weissenbach, Jean;
Bork, Peer

Publication type:

Article

Towards an ‘Oceans Systems Biology’.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.8

By:

Karsenti, Eric

Publication type:

Article

Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.3

By:

Frenkel‐Morgenstern, Milana;
Danon, Tamar;
Christian, Thomas;
Igarashi, Takao;
Cohen, Lydia;
Hou, Ya‐Ming;
Jensen, Lars Juhl

Publication type:

Article

Competing G protein-coupled receptor kinases balance G protein and β-arrestin signaling.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.22

By:

Heitzler, Domitille;
Durand, Guillaume;
Gallay, Nathalie;
Rizk, Aurélien;
Ahn, Seungkirl;
Kim, Jihee;
Violin, Jonathan D;
Dupuy, Laurence;
Gauthier, Christophe;
Piketty, Vincent;
Crépieux, Pascale;
Poupon, Anne;
Clément, Frédérique;
Fages, François;
Lefkowitz, Robert J;
Reiter, Eric

Publication type:

Article

Glucose deprivation activates a metabolic and signaling amplification loop leading to cell death.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.20

By:

Graham, Nicholas A;
Tahmasian, Martik;
Kohli, Bitika;
Komisopoulou, Evangelia;
Zhu, Maggie;
Vivanco, Igor;
Teitell, Michael A;
Wu, Hong;
Ribas, Antoni;
Lo, Roger S;
Mellinghoff, Ingo K;
Mischel, Paul S;
Graeber, Thomas G

Publication type:

Article

Model-driven multi-omic data analysis elucidates metabolic immunomodulators of macrophage activation.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.21

By:

Bordbar, Aarash;
Mo, Monica L;
Nakayasu, Ernesto S;
Schrimpe‐Rutledge, Alexandra C;
Kim, Young‐Mo;
Metz, Thomas O;
Jones, Marcus B;
Frank, Bryan C;
Smith, Richard D;
Peterson, Scott N;
Hyduke, Daniel R;
Adkins, Joshua N;
Palsson, Bernhard O

Publication type:

Article

Positive roles for negative regulators in the mating response of yeast.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.18

By:

Houser, John R;
Ford, Eintou;
Nagiec, Michal J;
Errede, Beverly;
Elston, Timothy C

Publication type:

Article

Comparative transcriptomics of pathogenic and non-pathogenic Listeria species.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.11

By:

Wurtzel, Omri;
Sesto, Nina;
Mellin, J R;
Karunker, Iris;
Edelheit, Sarit;
Bécavin, Christophe;
Archambaud, Cristel;
Cossart, Pascale;
Sorek, Rotem

Publication type:

Article

A regulatory role for repeated decoy transcription factor binding sites in target gene expression.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.7

By:

Lee, Tek‐Hyung;
Maheshri, Narendra

Publication type:

Article

Proteomic and protein interaction network analysis of human T lymphocytes during cell-cycle entry.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.5

By:

Orr, Stephen J;
Boutz, Daniel R;
Wang, Rong;
Chronis, Constantinos;
Lea, Nicholas C;
Thayaparan, Thivyan;
Hamilton, Emma;
Milewicz, Hanna;
Blanc, Eric;
Mufti, Ghulam J;
Marcotte, Edward M;
Thomas, N Shaun B

Publication type:

Article

The clock gene circuit in Arabidopsis includes a repressilator with additional feedback loops.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.6

By:

Pokhilko, Alexandra;
Fernández, Aurora Piñas;
Edwards, Kieron D;
Southern, Megan M;
Halliday, Karen J;
Millar, Andrew J

Publication type:

Article

Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshifting.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2011.101

By:

Maynard, Nathaniel D;
Macklin, Derek N;
Kirkegaard, Karla;
Covert, Markus W

Publication type:

Article

The glucose-deprivation network counteracts lapatinib-induced toxicity in resistant ErbB2-positive breast cancer cells.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.25

By:

Komurov, Kakajan;
Tseng, Jen‐Te;
Muller, Melissa;
Seviour, Elena G;
Moss, Tyler J;
Yang, Lifeng;
Nagrath, Deepak;
Ram, Prahlad T

Publication type:

Article

RNAi screening reveals a large signaling network controlling the Golgi apparatus in human cells.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.59

By:

Chia, Joanne;
Goh, Germaine;
Racine, Victor;
Ng, Susanne;
Kumar, Pankaj;
Bard, Frederic

Publication type:

Article

Reverse engineering a hierarchical regulatory network downstream of oncogenic KRAS.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.32

By:

Stelniec‐Klotz, Iwona;
Legewie, Stefan;
Tchernitsa, Oleg;
Witzel, Franziska;
Klinger, Bertram;
Sers, Christine;
Herzel, Hanspeter;
Blüthgen, Nils;
Schäfer, Reinhold

Publication type:

Article

Mapping the human phosphatome on growth pathways.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.36

By:

Sacco, Francesca;
Gherardini, Pier Federico;
Paoluzi, Serena;
Saez‐Rodriguez, Julio;
Helmer‐Citterich, Manuela;
Ragnini‐Wilson, Antonella;
Castagnoli, Luisa;
Cesareni, Gianni

Publication type:

Article

Combined experimental and computational analysis of DNA damage signaling reveals context-dependent roles for Erk in apoptosis and G1/S arrest after genotoxic stress.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 568, doi. 10.1038/msb.2012.1

By:

Tentner, Andrea R;
Lee, Michael J;
Ostheimer, Gerry J;
Samson, Leona D;
Lauffenburger, Douglas A;
Yaffe, Michael B

Publication type:

Article

Quantitative measurement of allele-specific protein expression in a diploid yeast hybrid by LC-MS.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 602, doi. 10.1038/msb.2012.34

By:

Khan, Zia;
Bloom, Joshua S;
Amini, Sasan;
Singh, Mona;
Perlman, David H;
Caudy, Amy A;
Kruglyak, Leonid

Publication type:

Article

Programming stress-induced altruistic death in engineered bacteria.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 626, doi. 10.1038/msb.2012.57

By:

Tanouchi, Yu;
Pai, Anand;
Buchler, Nicolas E;
You, Lingchong

Publication type:

Article

Inferring transcriptional and microRNA-mediated regulatory programs in glioblastoma.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 605, doi. 10.1038/msb.2012.37

By:

Setty, Manu;
Helmy, Karim;
Khan, Aly A;
Silber, Joachim;
Arvey, Aaron;
Neezen, Frank;
Agius, Phaedra;
Huse, Jason T;
Holland, Eric C;
Leslie, Christina S

Publication type:

Article

Competition between species can stabilize public-goods cooperation within a species.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 621, doi. 10.1038/msb.2012.54

By:

Celiker, Hasan;
Gore, Jeff

Publication type:

Article

Differential network biology.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2011.99

By:

Ideker, Trey;
Krogan, Nevan J

Publication type:

Article

Dynamics of protein noise can distinguish between alternate sources of gene-expression variability.

Published in:

Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.38

By:

Singh, Abhyudai;
Razooky, Brandon S;
Dar, Roy D;
Weinberger, Leor S

Publication type:

Article