Works matching IS 17444292 AND DT 2011 AND VI 7 AND IP 1

Results: 109

Erratum To: Predicting selective drug targets in cancer through metabolic networks.

Published in:

2011

By:

Folger, Ori;
Jerby, Livnat;
Frezza, Christian;
Gottlieb, Eyal;
Ruppin, Eytan;
Shlomi, Tomer

Publication type:

Correction Notice

Erratum To: PI3K‐dependent cross‐talk interactions converge with Ras as quantifiable inputs integrated by Erk.

Published in:

2011

By:

Wang, Chun‐Chao;
Cirit, Murat;
Haugh, Jason M

Publication type:

Correction Notice

Erratum To: Predicting selective drug targets in cancer through metabolic networks.

Published in:

2011

By:

Folger, Ori;
Jerby, Livnat;
Frezza, Christian;
Gottlieb, Eyal;
Ruppin, Eytan;
Shlomi, Tomer

Publication type:

Correction Notice

Programming an in vitro DNA oscillator using a molecular networking strategy.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.12

By:

Montagne, Kevin;
Plasson, Raphael;
Sakai, Yasuyuki;
Fujii, Teruo;
Rondelez, Yannick

Publication type:

Article

Proteome‐wide systems analysis of a cellulosic biofuel‐producing microbe.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2010.116

By:

Tolonen, Andrew C;
Haas, Wilhelm;
Chilaka, Amanda C;
Aach, John;
Gygi, Steven P;
Church, George M

Publication type:

Article

Toward an understanding of the protein interaction network of the human liver.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.67

By:

Wang, Jian;
Huo, Keke;
Ma, Lixin;
Tang, Liujun;
Li, Dong;
Huang, Xiaobi;
Yuan, Yanzhi;
Li, Chunhua;
Wang, Wei;
Guan, Wei;
Chen, Hui;
Jin, Chaozhi;
Wei, Junchen;
Zhang, Wanqiao;
Yang, Yongsheng;
Liu, Qiongming;
Zhou, Ying;
Zhang, Cuili;
Wu, Zhihao;
Xu, Wangxiang

Publication type:

Article

Characterizing the role of miRNAs within gene regulatory networks using integrative genomics techniques.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.23

By:

Su, Wan‐Lin;
Kleinhanz, Robert R;
Schadt, Eric E

Publication type:

Article

Strong negative feedback from Erk to Raf confers robustness to MAPK signalling.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.27

By:

Fritsche‐Guenther, Raphaela;
Witzel, Franziska;
Sieber, Anja;
Herr, Ricarda;
Schmidt, Nadine;
Braun, Sandra;
Brummer, Tilman;
Sers, Christine;
Blüthgen, Nils

Publication type:

Article

Engineering microbial biofuel tolerance and export using efflux pumps.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.21

By:

Dunlop, Mary J;
Dossani, Zain Y;
Szmidt, Heather L;
Chu, Hou Cheng;
Lee, Taek Soon;
Keasling, Jay D;
Hadi, Masood Z;
Mukhopadhyay, Aindrila

Publication type:

Article

Network modeling of the transcriptional effects of copy number aberrations in glioblastoma.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.17

By:

Jörnsten, Rebecka;
Abenius, Tobias;
Kling, Teresia;
Schmidt, Linnéa;
Johansson, Erik;
Nordling, Torbjörn E M;
Nordlander, Bodil;
Sander, Chris;
Gennemark, Peter;
Funa, Keiko;
Nilsson, Björn;
Lindahl, Linda;
Nelander, Sven

Publication type:

Article

Determinants of translation efficiency and accuracy.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.14

By:

Gingold, Hila;
Pilpel, Yitzhak

Publication type:

Article

Synthetic conversion of a graded receptor signal into a tunable, reversible switch.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.13

By:

Palani, Santhosh;
Sarkar, Casim A

Publication type:

Article

Metabolic modeling of endosymbiont genome reduction on a temporal scale.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.11

By:

Yizhak, Keren;
Tuller, Tamir;
Papp, Balázs;
Ruppin, Eytan

Publication type:

Article

Transcriptional control of metabolic fluxes.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.10

By:

Nielsen, Jens

Publication type:

Article

Large-scale <sup>13</sup>C-flux analysis reveals distinct transcriptional control of respiratory and fermentative metabolism in Escherichia coli.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.9

By:

Haverkorn van Rijsewijk, Bart R B;
Nanchen, Annik;
Nallet, Sophie;
Kleijn, Roelco J;
Sauer, Uwe

Publication type:

Article

RNAi screen of Salmonella invasion shows role of COPI in membrane targeting of cholesterol and Cdc42.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.7

By:

Misselwitz, Benjamin;
Dilling, Sabrina;
Vonaesch, Pascale;
Sacher, Raphael;
Snijder, Berend;
Schlumberger, Markus;
Rout, Samuel;
Stark, Manuel;
von Mering, Christian;
Pelkmans, Lucas;
Hardt, Wolf‐Dietrich

Publication type:

Article

Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.6

By:

Raes, Jeroen;
Letunic, Ivica;
Yamada, Takuji;
Jensen, Lars Juhl;
Bork, Peer

Publication type:

Article

Analysis of multiple compound–protein interactions reveals novel bioactive molecules.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.5

By:

Yabuuchi, Hiroaki;
Niijima, Satoshi;
Takematsu, Hiromu;
Ida, Tomomi;
Hirokawa, Takatsugu;
Hara, Takafumi;
Ogawa, Teppei;
Minowa, Yohsuke;
Tsujimoto, Gozoh;
Okuno, Yasushi

Publication type:

Article

A synthetic library of RNA control modules for predictable tuning of gene expression in yeast.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.4

By:

Babiskin, Andrew H;
Smolke, Christina D

Publication type:

Article

5-Hydroxymethylcytosine: a new kid on the epigenetic block?

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.95

By:

Matarese, Filomena;
Carrillo‐de Santa Pau, Enrique;
Stunnenberg, Hendrik G

Publication type:

Article

Glucose metabolism determines resistance of cancer cells to bioenergetic crisis after cytochrome-c release.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.2

By:

Huber, Heinrich J;
Dussmann, Heiko;
Kilbride, Seán M;
Rehm, Markus;
Prehn, Jochen H M

Publication type:

Article

Towards the prediction of protein interaction partners using physical docking.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.3

By:

Wass, Mark Nicholas;
Fuentes, Gloria;
Pons, Carles;
Pazos, Florencio;
Valencia, Alfonso

Publication type:

Article

Tristetraprolin-driven regulatory circuit controls quality and timing of mRNA decay in inflammation.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.93

By:

Kratochvill, Franz;
Machacek, Christian;
Vogl, Claus;
Ebner, Florian;
Sedlyarov, Vitaly;
Gruber, Andreas R;
Hartweger, Harald;
Vielnascher, Raimund;
Karaghiosoff, Marina;
Rülicke, Thomas;
Müller, Mathias;
Hofacker, Ivo;
Lang, Roland;
Kovarik, Pavel

Publication type:

Article

Antisense expression increases gene expression variability and locus interdependency.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.1

By:

Xu, Zhenyu;
Wei, Wu;
Gagneur, Julien;
Clauder‐Münster, Sandra;
Smolik, Miłosz;
Huber, Wolfgang;
Steinmetz, Lars M

Publication type:

Article

Rewiring makes the difference.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2010.117

By:

Califano, Andrea

Publication type:

Article

Proteomic snapshot of the EGF-induced ubiquitin network.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2010.118

By:

Argenzio, Elisabetta;
Bange, Tanja;
Oldrini, Barbara;
Bianchi, Fabrizio;
Peesari, Raghunath;
Mari, Sara;
Di Fiore, Pier Paolo;
Mann, Matthias;
Polo, Simona

Publication type:

Article

Overexpression limits of fission yeast cell-cycle regulators in vivo and in silico.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.91

By:

Moriya, Hisao;
Chino, Ayako;
Kapuy, Orsolya;
Csikász‐Nagy, Attila;
Novák, Béla

Publication type:

Article

Proteome-wide systems analysis of a cellulosic biofuel-producing microbe.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/MSB.2010.116

By:

Tolonen, Andrew C;
Haas, Wilhelm;
Chilaka, Amanda C;
Aach, John;
Gygi, Steven P;
Church, George M

Publication type:

Article

A panorama of mammalian gene expression evolution.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.86

By:

Zhang, Jianzhi

Publication type:

Article

Integrative genome-scale metabolic analysis of Vibrio vulnificus for drug targeting and discovery.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2010.115

By:

Kim, Hyun Uk;
Kim, Soo Young;
Jeong, Haeyoung;
Kim, Tae Yong;
Kim, Jae Jong;
Choy, Hyon E;
Yi, Kyu Yang;
Rhee, Joon Haeng;
Lee, Sang Yup

Publication type:

Article

Structural and functional protein network analyses predict novel signaling functions for rhodopsin.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.83

By:

Kiel, Christina;
Vogt, Andreas;
Campagna, Anne;
Chatr‐aryamontri, Andrew;
Swiatek‐de Lange, Magdalena;
Beer, Monika;
Bolz, Sylvia;
Mack, Andreas F;
Kinkl, Norbert;
Cesareni, Gianni;
Serrano, Luis;
Ueffing, Marius

Publication type:

Article

Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2010.112

By:

Miller, Christian;
Schwalb, Björn;
Maier, Kerstin;
Schulz, Daniel;
Dümcke, Sebastian;
Zacher, Benedikt;
Mayer, Andreas;
Sydow, Jasmin;
Marcinowski, Lisa;
Dölken, Lars;
Martin, Dietmar E;
Tresch, Achim;
Cramer, Patrick

Publication type:

Article

Self-organized partitioning of dynamically localized proteins in bacterial cell division.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2010.111

By:

Di Ventura, Barbara;
Sourjik, Victor

Publication type:

Article

The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.84

By:

Munoz, Javier;
Low, Teck Y;
Kok, Yee J;
Chin, Angela;
Frese, Christian K;
Ding, Vanessa;
Choo, Andre;
Heck, Albert J R

Publication type:

Article

Deep proteome and transcriptome mapping of a human cancer cell line.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.81

By:

Nagaraj, Nagarjuna;
Wisniewski, Jacek R;
Geiger, Tamar;
Cox, Juergen;
Kircher, Martin;
Kelso, Janet;
Pääbo, Svante;
Mann, Matthias

Publication type:

Article

Mapping the interaction of Snf1 with TORC1 in Saccharomyces cerevisiae.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.80

By:

Zhang, Jie;
Vaga, Stefania;
Chumnanpuen, Pramote;
Kumar, Rahul;
Vemuri, Goutham N;
Aebersold, Ruedi;
Nielsen, Jens

Publication type:

Article

Carbohydrate-active enzymes exemplify entropic principles in metabolism.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.76

By:

Kartal, Önder;
Mahlow, Sebastian;
Skupin, Alexander;
Ebenhöh, Oliver

Publication type:

Article

A novel strategy for the comprehensive analysis of the biomolecular composition of isolated plasma membranes.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.74

By:

Thimiri Govinda Raj, Deepak B;
Ghesquière, Bart;
Tharkeshwar, Arun Kumar;
Coen, Katrijn;
Derua, Rita;
Vanderschaeghe, Dieter;
Rysman, Evelien;
Bagadi, Murali;
Baatsen, Pieter;
De Strooper, Bart;
Waelkens, Etienne;
Borghs, Gustaaf;
Callewaert, Nico;
Swinnen, Johan;
Gevaert, Kris;
Annaert, Wim

Publication type:

Article

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.75

By:

Sievers, Fabian;
Wilm, Andreas;
Dineen, David;
Gibson, Toby J;
Karplus, Kevin;
Li, Weizhong;
Lopez, Rodrigo;
McWilliam, Hamish;
Remmert, Michael;
Söding, Johannes;
Thompson, Julie D;
Higgins, Desmond G

Publication type:

Article

Dissecting the retinoid-induced differentiation of F9 embryonal stem cells by integrative genomics.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.73

By:

Mendoza‐Parra, Marco A;
Walia, Mannu;
Sankar, Martial;
Gronemeyer, Hinrich

Publication type:

Article

The self-assessment trap: can we all be better than average?

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.70

By:

Norel, Raquel;
Rice, John Jeremy;
Stolovitzky, Gustavo

Publication type:

Article

Optimal regulatory strategies for metabolic pathways in Escherichia coli depending on protein costs.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.46

By:

Wessely, Frank;
Bartl, Martin;
Guthke, Reinhard;
Li, Pu;
Schuster, Stefan;
Kaleta, Christoph

Publication type:

Article

Cellular reprogramming by the conjoint action of ERα, FOXA1, and GATA3 to a ligand-inducible growth state.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.59

By:

Kong, Say Li;
Li, Guoliang;
Loh, Siang Lin;
Sung, Wing‐Kin;
Liu, Edison T

Publication type:

Article

Engineering microbes to sense and eradicate Pseudomonas aeruginosa, a human pathogen.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.55

By:

Saeidi, Nazanin;
Wong, Choon Kit;
Lo, Tat‐Ming;
Nguyen, Hung Xuan;
Ling, Hua;
Leong, Susanna Su Jan;
Poh, Chueh Loo;
Chang, Matthew Wook

Publication type:

Article

Suppressing variation in synthetic circuits.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.53

By:

Batchelor, Eric;
Lahav, Galit

Publication type:

Article

Metabolic network reconstruction of Chlamydomonas offers insight into light-driven algal metabolism.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.52

By:

Chang, Roger L;
Ghamsari, Lila;
Manichaikul, Ani;
Hom, Erik F Y;
Balaji, Santhanam;
Fu, Weiqi;
Shen, Yun;
Hao, Tong;
Palsson, Bernhard Ø;
Salehi‐Ashtiani, Kourosh;
Papin, Jason A

Publication type:

Article

Arabidopsis G-protein interactome reveals connections to cell wall carbohydrates and morphogenesis.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.66

By:

Klopffleisch, Karsten;
Phan, Nguyen;
Augustin, Kelsey;
Bayne, Robert S;
Booker, Katherine S;
Botella, Jose R;
Carpita, Nicholas C;
Carr, Tyrell;
Chen, Jin‐Gui;
Cooke, Thomas Ryan;
Frick‐Cheng, Arwen;
Friedman, Erin J;
Fulk, Brandon;
Hahn, Michael G;
Jiang, Kun;
Jorda, Lucia;
Kruppe, Lydia;
Liu, Chenggang;
Lorek, Justine;
McCann, Maureen C

Publication type:

Article

Fleeting hormone cues get stabilized for plant organogenesis.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.45

By:

Sauer, Michael;
Friml, Jiří

Publication type:

Article

Economics of membrane occupancy and respiro-fermentation.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.34

By:

Zhuang, Kai;
Vemuri, Goutham N;
Mahadevan, Radhakrishnan

Publication type:

Article

PREDICT: a method for inferring novel drug indications with application to personalized medicine.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.26

By:

Gottlieb, Assaf;
Stein, Gideon Y;
Ruppin, Eytan;
Sharan, Roded

Publication type:

Article