Works matching IS 17444292 AND DT 2009 AND VI 5 AND IP 1

Results: 105

Erratum To: Glucose regulates transcription in yeast through a network of signaling pathways.

Published in:

2009

By:

Zaman, Shadia;
Lippman, Soyeon I;
Schneper, Lisa;
Slonim, Noam;
Broach, James R

Publication type:

Correction Notice

Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 236, doi. 10.1038/msb.2008.73

By:

Csikász‐Nagy, Attila;
Kapuy, Orsolya;
Tóth, Attila;
Pál, Csaba;
Jensen, Lars Juhl;
Uhlmann, Frank;
Tyson, John J;
Novák, Béla

Publication type:

Article

Input–output behavior of ErbB signaling pathways as revealed by a mass action model trained against dynamic data.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 239, doi. 10.1038/msb.2008.74

By:

Chen, William W;
Schoeberl, Birgit;
Jasper, Paul J;
Niepel, Mario;
Nielsen, Ulrik B;
Lauffenburger, Douglas A;
Sorger, Peter K

Publication type:

Article

Engineering key components in a synthetic eukaryotic signal transduction pathway.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 270, doi. 10.1038/msb.2009.28

By:

Antunes, Mauricio S;
Morey, Kevin J;
Tewari‐Singh, Neera;
Bowen, Tessa A;
Smith, J Jeff;
Webb, Colleen T;
Hellinga, Homme W;
Medford, June I

Publication type:

Article

Optimal tuning of bacterial sensing potential.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 286, doi. 10.1038/msb.2009.43

By:

Pai, Anand;
You, Lingchong

Publication type:

Article

Erratum To: A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system.

Published in:

2009

By:

van Wijk, Sjoerd J L;
de Vries, Sjoerd J;
Kemmeren, Patrick;
Huang, Anding;
Boelens, Rolf;
Bonvin, Alexandre M J J;
Timmers, H Th Marc

Publication type:

Correction Notice

Prevalence of transcription promoters within archaeal operons and coding sequences.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 285, doi. 10.1038/msb.2009.42

By:

Koide, Tie;
Reiss, David J;
Bare, J Christopher;
Pang, Wyming Lee;
Facciotti, Marc T;
Schmid, Amy K;
Pan, Min;
Marzolf, Bruz;
Van, Phu T;
Lo, Fang‐Yin;
Pratap, Abhishek;
Deutsch, Eric W;
Peterson, Amelia;
Martin, Dan;
Baliga, Nitin S

Publication type:

Article

An integrated workflow for charting the human interaction proteome: insights into the PP2A system.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 237, doi. 10.1038/msb.2008.75

By:

Glatter, Timo;
Wepf, Alexander;
Aebersold, Ruedi;
Gstaiger, Matthias

Publication type:

Article

Dynamic map of protein interactions in the Escherichia coli chemotaxis pathway.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 238, doi. 10.1038/msb.2008.77

By:

Kentner, David;
Sourjik, Victor

Publication type:

Article

How to deal with large models?

Published in:

2009

By:

Hlavacek, William S

Publication type:

Opinion

Engineered single- and multi-cell chemotaxis pathways in E. coli.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 283, doi. 10.1038/msb.2009.41

By:

Goldberg, Shalom D;
Derr, Paige;
DeGrado, William F;
Goulian, Mark

Publication type:

Article

Harnessing gene expression to identify the genetic basis of drug resistance.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 310, doi. 10.1038/msb.2009.69

By:

Chen, Bo‐Juen;
Causton, Helen C;
Mancenido, Denesy;
Goddard, Noel L;
Perlstein, Ethan O;
Pe'er, Dana

Publication type:

Article

Linear combinations of docking affinities explain quantitative differences in RTK signaling.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 235, doi. 10.1038/msb.2008.72

By:

Gordus, Andrew;
Krall, Jordan A;
Beyer, Elsa M;
Kaushansky, Alexis;
Wolf‐Yadlin, Alejandro;
Sevecka, Mark;
Chang, Bryan H;
Rush, John;
MacBeath, Gavin

Publication type:

Article

Harmonic oscillator model of the insulin and IGF1 receptors’ allosteric binding and activation.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 243, doi. 10.1038/msb.2008.78

By:

Kiselyov, Vladislav V;
Versteyhe, Soetkin;
Gauguin, Lisbeth;
De Meyts, Pierre

Publication type:

Article

Comprehensive analysis of Arabidopsis expression level polymorphisms with simple inheritance.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 242, doi. 10.1038/msb.2008.79

By:

Plantegenet, Stephanie;
Weber, Johann;
Goldstein, Darlene R;
Zeller, Georg;
Nussbaumer, Cindy;
Thomas, Jérôme;
Weigel, Detlef;
Harshman, Keith;
Hardtke, Christian S

Publication type:

Article

Environment-specific combinatorial cis-regulation in synthetic promoters.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 244, doi. 10.1038/msb.2009.1

By:

Gertz, Jason;
Cohen, Barak A

Publication type:

Article

PI3K-dependent cross-talk interactions converge with Ras as quantifiable inputs integrated by Erk.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 246, doi. 10.1038/msb.2009.4

By:

Wang, Chun‐Chao;
Cirit, Murat;
Haugh, Jason M

Publication type:

Article

Glucose regulates transcription in yeast through a network of signaling pathways.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 245, doi. 10.1038/msb.2009.2

By:

Zaman, Shadia;
Lippman, Soyeon I;
Schneper, Lisa;
Slonim, Noam;
Broach, James R

Publication type:

Article

Force- and length-dependent catastrophe activities explain interphase microtubule organization in fission yeast.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 241, doi. 10.1038/msb.2008.76

By:

Foethke, Dietrich;
Makushok, Tatyana;
Brunner, Damian;
Nédélec, François

Publication type:

Article

Toward accurate reconstruction of functional protein networks.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 248, doi. 10.1038/msb.2009.3

By:

Yosef, Nir;
Ungar, Lior;
Zalckvar, Einat;
Kimchi, Adi;
Kupiec, Martin;
Ruppin, Eytan;
Sharan, Roded

Publication type:

Article

Force- and kinesin-8-dependent effects in the spatial regulation of fission yeast microtubule dynamics.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 250, doi. 10.1038/msb.2009.5

By:

Tischer, Christian;
Brunner, Damian;
Dogterom, Marileen

Publication type:

Article

Temporal switching and cell-to-cell variability in Ca<sup>2+</sup> release activity in mammalian cells.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 247, doi. 10.1038/msb.2009.6

By:

Nakamura, Naotoshi;
Yamazawa, Toshiko;
Okubo, Yohei;
Iino, Masamitsu

Publication type:

Article

Toward a comprehensive and quantitative understanding of intracellular microtubule organization.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 251, doi. 10.1038/msb.2009.7

By:

Grishchuk, Ekaterina L

Publication type:

Article

Personalizing medicine: a systems biology perspective.

Published in:

2009

By:

Deisboeck, Thomas S

Publication type:

Editorial

Linearization through distortion: a new facet of negative feedback in signalling.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 255, doi. 10.1038/msb.2009.14

By:

Becskei, Attila

Publication type:

Article

Complex topology rather than complex membership is a determinant of protein dosage sensitivity.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 253, doi. 10.1038/msb.2009.9

By:

Oberdorf, Richard;
Kortemme, Tanja

Publication type:

Article

A systems approach to prion disease.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 252, doi. 10.1038/msb.2009.10

By:

Hwang, Daehee;
Lee, Inyoul Y;
Yoo, Hyuntae;
Gehlenborg, Nils;
Cho, Ji‐Hoon;
Petritis, Brianne;
Baxter, David;
Pitstick, Rose;
Young, Rebecca;
Spicer, Doug;
Price, Nathan D;
Hohmann, John G;
DeArmond, Stephen J;
Carlson, George A;
Hood, Leroy E

Publication type:

Article

A landmark systems analysis of prion disease of the brain.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 254, doi. 10.1038/msb.2009.12

By:

Omenn, Gilbert S

Publication type:

Article

Glucose regulates transcription in yeast through a network of signaling pathways.

Published in:

2009

By:

Zaman, Shadia;
Lippman, Soyeon I;
Schneper, Lisa;
Slonim, Noam;
Broach, James R

Publication type:

Correction Notice

GPIomics: global analysis of glycosylphosphatidylinositol-anchored molecules of Trypanosoma cruzi.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 261, doi. 10.1038/msb.2009.13

By:

Nakayasu, Ernesto S;
Yashunsky, Dmitry V;
Nohara, Lilian L;
Torrecilhas, Ana Claudia T;
Nikolaev, Andrei V;
Almeida, Igor C

Publication type:

Article

The impact of cellular networks on disease comorbidity.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 262, doi. 10.1038/msb.2009.16

By:

Park, Juyong;
Lee, Deok‐Sun;
Christakis, Nicholas A;
Barabási, Albert‐László

Publication type:

Article

High heritability of metabolomic profiles in families burdened with premature cardiovascular disease.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 258, doi. 10.1038/msb.2009.11

By:

Shah, Svati H;
Hauser, Elizabeth R;
Bain, James R;
Muehlbauer, Michael J;
Haynes, Carol;
Stevens, Robert D;
Wenner, Brett R;
Dowdy, Z Elaine;
Granger, Christopher B;
Ginsburg, Geoffrey S;
Newgard, Christopher B;
Kraus, William E

Publication type:

Article

Metabolomics of the interaction between PPAR-α and age in the PPAR-α-null mouse.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 259, doi. 10.1038/msb.2009.18

By:

Atherton, Helen J;
Gulston, Melanie K;
Bailey, Nigel J;
Cheng, Kian‐Kai;
Zhang, Wen;
Clarke, Kieran;
Griffin, Julian L

Publication type:

Article

Systems-level interactions between insulin–EGF networks amplify mitogenic signaling.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 256, doi. 10.1038/msb.2009.19

By:

Borisov, Nikolay;
Aksamitiene, Edita;
Kiyatkin, Anatoly;
Legewie, Stefan;
Berkhout, Jan;
Maiwald, Thomas;
Kaimachnikov, Nikolai P;
Timmer, Jens;
Hoek, Jan B;
Kholodenko, Boris N

Publication type:

Article

Tissue specificity and the human protein interaction network.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 260, doi. 10.1038/msb.2009.17

By:

Bossi, Alice;
Lehner, Ben

Publication type:

Article

Adaptable gene-specific dye bias correction for two-channel DNA microarrays.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 266, doi. 10.1038/msb.2009.21

By:

Margaritis, Thanasis;
Lijnzaad, Philip;
van Leenen, Dik;
Bouwmeester, Diane;
Kemmeren, Patrick;
van Hooff, Sander R;
Holstege, Frank CP

Publication type:

Article

Predicting metabolic biomarkers of human inborn errors of metabolism.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 263, doi. 10.1038/msb.2009.22

By:

Shlomi, Tomer;
Cabili, Moran N;
Ruppin, Eytan

Publication type:

Article

How selection affects phenotypic fluctuation.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 264, doi. 10.1038/msb.2009.23

By:

Ito, Yoichiro;
Toyota, Hitoshi;
Kaneko, Kunihiko;
Yomo, Tetsuya

Publication type:

Article

Efficient protein depletion by genetically controlled deprotection of a dormant N-degron.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 267, doi. 10.1038/msb.2009.25

By:

Taxis, Christof;
Stier, Gunter;
Spadaccini, Roberta;
Knop, Michael

Publication type:

Article

Predicting and controlling the reactivity of immune cell populations against cancer.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 265, doi. 10.1038/msb.2009.15

By:

Oved, Kfir;
Eden, Eran;
Akerman, Martin;
Noy, Roy;
Wolchinsky, Ron;
Izhaki, Orit;
Schallmach, Ester;
Kubi, Adva;
Zabari, Naama;
Schachter, Jacob;
Alon, Uri;
Mandel‐Gutfreund, Yael;
Besser, Michal J;
Reiter, Yoram

Publication type:

Article

Discovering structural cis-regulatory elements by modeling the behaviors of mRNAs.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 268, doi. 10.1038/msb.2009.24

By:

Foat, Barrett C;
Stormo, Gary D

Publication type:

Article

Targeted tandem affinity purification of PSD-95 recovers core postsynaptic complexes and schizophrenia susceptibility proteins.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 269, doi. 10.1038/msb.2009.27

By:

Fernández, Esperanza;
Collins, Mark O;
Uren, Rachel T;
Kopanitsa, Maksym V;
Komiyama, Noboru H;
Croning, Mike D R;
Zografos, Lysimachos;
Armstrong, J Douglas;
Choudhary, Jyoti S;
Grant, Seth G N

Publication type:

Article

Understanding the regulation of aspartate metabolism using a model based on measured kinetic parameters.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 271, doi. 10.1038/msb.2009.29

By:

Curien, Gilles;
Bastien, Olivier;
Robert‐Genthon, Mylène;
Cornish‐Bowden, Athel;
Cárdenas, María Luz;
Dumas, Renaud

Publication type:

Article

Protein sequestration generates a flexible ultrasensitive response in a genetic network.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 272, doi. 10.1038/msb.2009.30

By:

Buchler, Nicolas E;
Cross, Frederick R

Publication type:

Article

A comprehensive framework of E2–RING E3 interactions of the human ubiquitin–proteasome system.

Published in:

2009

By:

van Wijk, Sjoerd J L;
de Vries, Sjoerd J;
Kemmeren, Patrick;
Huang, Anding;
Boelens, Rolf;
Bonvin, Alexandre M J J;
Timmers, H Th Marc

Publication type:

Correction Notice

Personal phenotypes to go with personal genomes.

Published in:

2009

By:

Snyder, Michael;
Weissman, Sherman;
Gerstein, Mark

Publication type:

Editorial

Genome-wide allele- and strand-specific expression profiling.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 274, doi. 10.1038/msb.2009.31

By:

Gagneur, Julien;
Sinha, Himanshu;
Perocchi, Fabiana;
Bourgon, Richard;
Huber, Wolfgang;
Steinmetz, Lars M

Publication type:

Article

An atlas of chaperone–protein interactions in Saccharomyces cerevisiae: implications to protein folding pathways in the cell.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 275, doi. 10.1038/msb.2009.26

By:

Gong, Yunchen;
Kakihara, Yoshito;
Krogan, Nevan;
Greenblatt, Jack;
Emili, Andrew;
Zhang, Zhaolei;
Houry, Walid A

Publication type:

Article

An integrated network approach identifies the isobutanol response network of Escherichia coli.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 277, doi. 10.1038/msb.2009.34

By:

Brynildsen, Mark P;
Liao, James C

Publication type:

Article

Backup in gene regulatory networks explains differences between binding and knockout results.

Published in:

Molecular Systems Biology, 2009, v. 5, n. 1, p. 276, doi. 10.1038/msb.2009.33

By:

Gitter, Anthony;
Siegfried, Zehava;
Klutstein, Michael;
Fornes, Oriol;
Oliva, Baldo;
Simon, Itamar;
Bar‐Joseph, Ziv

Publication type:

Article