Works matching IS 17444292 AND DT 2008 AND VI 4 AND IP 1

Results: 78

Erratum To: Increased glycolytic flux as an outcome of whole‐genome duplication in yeast.

Published in:

2008

By:

Conant, Gavin C;
Wolfe, Kenneth H

Publication type:

Correction Notice

In reply: ‘Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions’.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.38

By:

Luo, Ruo‐Yu;
Li, Yi‐Xue;
Luo, Qingming

Publication type:

Article

Erratum To: Isoform switching facilitates period control in the Neurospora crassa circadian clock.

Published in:

2008

By:

Akman, Ozgur E;
Locke, James CW;
Tang, Sanyi;
Carré, Isabelle;
Millar, Andrew J;
Rand, David A

Publication type:

Correction Notice

Analysis of pairwise cell interactions using an integrated dielectrophoretic-microfluidic system.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.69

By:

Yin, Zhizhong;
Noren, David;
Wang, C Joanne;
Hang, Rob;
Levchenko, Andre

Publication type:

Article

Hepatitis C virus infection protein network.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.66

By:

de Chassey, B;
Navratil, V;
Tafforeau, L;
Hiet, M S;
Aublin‐Gex, A;
Agaugué, S;
Meiffren, G;
Pradezynski, F;
Faria, B F;
Chantier, T;
Le Breton, M;
Pellet, J;
Davoust, N;
Mangeot, P E;
Chaboud, A;
Penin, F;
Jacob, Y;
Vidalain, P O;
Vidal, M;
André, P

Publication type:

Article

Finding multiple target optimal intervention in disease-related molecular network.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.60

By:

Yang, Kun;
Bai, Hongjun;
Ouyang, Qi;
Lai, Luhua;
Tang, Chao

Publication type:

Article

Developmental regulatory bits.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.64

By:

Siggia, Eric D

Publication type:

Article

The temporal response of the Mycobacterium tuberculosis gene regulatory network during growth arrest.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.63

By:

Balázsi, Gábor;
Heath, Allison P;
Shi, Lanbo;
Gennaro, Maria L

Publication type:

Article

Small hairpin RNA as a small molecule sensor.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.67

By:

Benenson, Yaakov

Publication type:

Article

Model-guided design of ligand-regulated RNAi for programmable control of gene expression.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.62

By:

Beisel, Chase L;
Bayer, Travis S;
Hoff, Kevin G;
Smolke, Christina D

Publication type:

Article

Systemic multicompartmental effects of the gut microbiome on mouse metabolic phenotypes.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.56

By:

Claus, Sandrine P;
Tsang, Tsz M;
Wang, Yulan;
Cloarec, Olivier;
Skordi, Eleni;
Martin, François‐Pierre;
Rezzi, Serge;
Ross, Alastair;
Kochhar, Sunil;
Holmes, Elaine;
Nicholson, Jeremy K

Publication type:

Article

InnateDB: facilitating systems-level analyses of the mammalian innate immune response.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.55

By:

Lynn, David J;
Winsor, Geoffrey L;
Chan, Calvin;
Richard, Nicolas;
Laird, Matthew R;
Barsky, Aaron;
Gardy, Jennifer L;
Roche, Fiona M;
Chan, Timothy H W;
Shah, Naisha;
Lo, Raymond;
Naseer, Misbah;
Que, Jaimmie;
Yau, Melissa;
Acab, Michael;
Tulpan, Dan;
Whiteside, Matthew D;
Chikatamarla, Avinash;
Mah, Bernadette;
Munzner, Tamara

Publication type:

Article

A competitive complex formation mechanism underlies trichome patterning on Arabidopsis leaves.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.54

By:

Digiuni, Simona;
Schellmann, Swen;
Geier, Florian;
Greese, Bettina;
Pesch, Martina;
Wester, Katja;
Dartan, Burcu;
Mach, Valerie;
Srinivas, Bhylahalli Purushottam;
Timmer, Jens;
Fleck, Christian;
Hulskamp, Martin

Publication type:

Article

Models from experiments: combinatorial drug perturbations of cancer cells.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.53

By:

Nelander, Sven;
Wang, Weiqing;
Nilsson, Björn;
She, Qing‐Bai;
Pratilas, Christine;
Rosen, Neal;
Gennemark, Peter;
Sander, Chris

Publication type:

Article

High-order combination effects and biological robustness.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.51

By:

Lehár, Joseph;
Krueger, Andrew;
Zimmermann, Grant;
Borisy, Alexis

Publication type:

Article

Constraints imposed by non-functional protein–protein interactions on gene expression and proteome size.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.48

By:

Zhang, Jingshan;
Maslov, Sergei;
Shakhnovich, Eugene I

Publication type:

Article

From E-MAPs to module maps: dissecting quantitative genetic interactions using physical interactions.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.42

By:

Ulitsky, Igor;
Shlomi, Tomer;
Kupiec, Martin;
Shamir, Ron

Publication type:

Article

Comment on ‘Dynamic analysis of optimality in myocardial energy metabolism under normal and ischemic conditions’.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.37

By:

Beard, Daniel A

Publication type:

Article

The incoherent feed-forward loop can generate non-monotonic input functions for genes.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.43

By:

Kaplan, Shai;
Bren, Anat;
Dekel, Erez;
Alon, Uri

Publication type:

Article

Parasites lead to evolution of robustness against gene loss in host signaling networks.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.44

By:

Salathé, Marcel;
Soyer, Orkun S

Publication type:

Article

When microarrays Met epidermal-cell migration.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.41

By:

Janes, Kevin A

Publication type:

Article

Gene network dynamics controlling keratinocyte migration.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.36

By:

Busch, Hauke;
Camacho‐Trullio, David;
Rogon, Zbigniew;
Breuhahn, Kai;
Angel, Peter;
Eils, Roland;
Szabowski, Axel

Publication type:

Article

Millimeter-scale genetic gradients and community-level molecular convergence in a hypersaline microbial mat.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.35

By:

Kunin, Victor;
Raes, Jeroen;
Harris, J Kirk;
Spear, John R;
Walker, Jeffrey J;
Ivanova, Natalia;
von Mering, Christian;
Bebout, Brad M;
Pace, Norman R;
Bork, Peer;
Hugenholtz, Philip

Publication type:

Article

Gender-dependent progression of systemic metabolic states in early childhood.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.34

By:

Nikkilä, Janne;
Sysi‐Aho, Marko;
Ermolov, Andrey;
Seppänen‐Laakso, Tuulikki;
Simell, Olli;
Kaski, Samuel;
Orešič, Matej

Publication type:

Article

Colored extrinsic fluctuations and stochastic gene expression.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.31

By:

Shahrezaei, Vahid;
Ollivier, Julien F;
Swain, Peter S

Publication type:

Article

A theoretical model of mitotic spindle elongation under experimental constraints.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.33

By:

Surrey, Thomas

Publication type:

Article

Large-scale phosphorylation mapping reveals the extent of tyrosine phosphorylation in Arabidopsis.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.32

By:

Sugiyama, Naoyuki;
Nakagami, Hirofumi;
Mochida, Keiichi;
Daudi, Arsalan;
Tomita, Masaru;
Shirasu, Ken;
Ishihama, Yasushi

Publication type:

Article

Recursive construction of perfect DNA molecules from imperfect oligonucleotides.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.26

By:

Linshiz, Gregory;
Yehezkel, Tuval Ben;
Kaplan, Shai;
Gronau, Ilan;
Ravid, Sivan;
Adar, Rivka;
Shapiro, Ehud

Publication type:

Article

Systems engineering to systems biology.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.22

By:

Yıldırım, Muhammed A;
Vidal, Marc

Publication type:

Article

Ultrasensitive gene regulation by positive feedback loops in nucleosome modification.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.21

By:

Sneppen, Kim;
Micheelsen, Mille A;
Dodd, Ian B

Publication type:

Article

Synthetic gene brushes: a structure–function relationship.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.20

By:

Buxboim, Amnon;
Daube, Shirley S;
Bar‐Ziv, Roy

Publication type:

Article

Metabolic model integration of the bibliome, genome, metabolome and reactome of Aspergillus niger.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.12

By:

Andersen, Mikael Rørdam;
Nielsen, Michael Lynge;
Nielsen, Jens

Publication type:

Article

Systems analysis of metabolism in the pathogenic trypanosomatid Leishmania major.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.15

By:

Chavali, Arvind K;
Whittemore, Jeffrey D;
Eddy, James A;
Williams, Kyle T;
Papin, Jason A

Publication type:

Article

The liver pharmacological and xenobiotic gene response repertoire.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.9

By:

Natsoulis, Georges;
Pearson, Cecelia I;
Gollub, Jeremy;
P Eynon, Barrett;
Ferng, Joe;
Nair, Ramesh;
Idury, Radha;
Lee, May D;
Fielden, Mark R;
Brennan, Richard J;
Roter, Alan H;
Jarnagin, Kurt

Publication type:

Article

A complete collection of single-gene deletion mutants of Acinetobacter baylyi ADP1.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.10

By:

de Berardinis, Véronique;
Vallenet, David;
Castelli, Vanina;
Besnard, Marielle;
Pinet, Agnès;
Cruaud, Corinne;
Samair, Sumitta;
Lechaplais, Christophe;
Gyapay, Gabor;
Richez, Céline;
Durot, Maxime;
Kreimeyer, Annett;
Le Fèvre, François;
Schächter, Vincent;
Pezo, Valérie;
Döring, Volker;
Scarpelli, Claude;
Médigue, Claudine;
Cohen, Georges N;
Marlière, Philippe

Publication type:

Article

A comprehensive modular map of molecular interactions in RB/E2F pathway.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.7

By:

Calzone, Laurence;
Gelay, Amélie;
Zinovyev, Andrei;
Radvanyi, François;
Barillot, Emmanuel

Publication type:

Article

A systems-level approach to mapping the telomere length maintenance gene circuitry.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.13

By:

Shachar, Rafi;
Ungar, Lior;
Kupiec, Martin;
Ruppin, Eytan;
Sharan, Roded

Publication type:

Article

Formulating genome-scale kinetic models in the post-genome era.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.8

By:

Jamshidi, Neema;
Palsson, Bernhard Ø

Publication type:

Article

Selection to minimise noise in living systems and its implications for the evolution of gene expression.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.11

By:

Lehner, Ben

Publication type:

Article

<sup>1</sup>H NMR metabonomics approach to the disease continuum of diabetic complications and premature death.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb4100205

By:

Mäkinen, Ville‐Petteri;
Soininen, Pasi;
Forsblom, Carol;
Parkkonen, Maija;
Ingman, Petri;
Kaski, Kimmo;
Groop, Per‐Henrik;
Ala‐Korpela, Mika

Publication type:

Article

Modularity defined.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.3

By:

Sauro, Herbert M

Publication type:

Article

Accurate prediction of protein–protein interactions from sequence alignments using a Bayesian method.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb4100203

By:

Burger, Lukas;
van Nimwegen, Erik

Publication type:

Article

‘Junk’ DNA meets the p53 network.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.68

By:

Blattner, Christine

Publication type:

Article

Robust and sensitive control of a quorum-sensing circuit by two interlocked feedback loops.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.70

By:

Williams, Joshua W;
Cui, Xiaohui;
Levchenko, Andre;
Stevens, Ann M

Publication type:

Article

Metabolomic and flux-balance analysis of age-related decline of hypoxia tolerance in Drosophila muscle tissue.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.71

By:

Coquin, Laurence;
Feala, Jacob D;
McCulloch, Andrew D;
Paternostro, Giovanni

Publication type:

Article

p53-repressed miRNAs are involved with E2F in a feed-forward loop promoting proliferation.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.65

By:

Brosh, Ran;
Shalgi, Reut;
Liran, Atar;
Landan, Gilad;
Korotayev, Katya;
Nguyen, Giang Huong;
Enerly, Espen;
Johnsen, Hilde;
Buganim, Yosef;
Solomon, Hilla;
Goldstein, Ido;
Madar, Shalom;
Goldfinger, Naomi;
Børresen‐Dale, Anne‐Lise;
Ginsberg, Doron;
Harris, Curtis C;
Pilpel, Yitzhak;
Oren, Moshe;
Rotter, Varda

Publication type:

Article

Selected reaction monitoring for quantitative proteomics: a tutorial.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.61

By:

Lange, Vinzenz;
Picotti, Paola;
Domon, Bruno;
Aebersold, Ruedi

Publication type:

Article

A quantitative comparison of sRNA-based and protein-based gene regulation.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.58

By:

Mehta, Pankaj;
Goyal, Sidhartha;
Wingreen, Ned S

Publication type:

Article

An integrated cell-free metabolic platform for protein production and synthetic biology.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.57

By:

Jewett, Michael C;
Calhoun, Kara A;
Voloshin, Alexei;
Wuu, Jessica J;
Swartz, James R

Publication type:

Article

Transient transcriptional responses to stress are generated by opposing effects of mRNA production and degradation.

Published in:

Molecular Systems Biology, 2008, v. 4, n. 1, p. 1, doi. 10.1038/msb.2008.59

By:

Shalem, Ophir;
Dahan, Orna;
Levo, Michal;
Martinez, Maria Rodriguez;
Furman, Itay;
Segal, Eran;
Pilpel, Yitzhak

Publication type:

Article