Works matching IS 17417007 AND DT 2025 AND VI 23 AND IP 1

Results: 252

Metabolic landscape uncovers remodeling of T cell immunity affected by fatty acid desaturase in Parkinson's disease at single-cell resolution.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02358-w

By:

Yan, Shi;
Zhao, Xue;
Si, Yao;
Zhang, Xinyu;
Wang, Di;
Yao, Lifen;
Sun, Linlin

Publication type:

Article

Genomic analyses support locally derived crown-of-thorns seastar outbreaks in the Pacific.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02350-4

By:

Leiva, Carlos;
Martín-Huete, Marta;
Lemer, Sarah

Publication type:

Article

TAD conservation in vertebrate genomes is driven by stabilising selection.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02362-0

By:

Patalano, Fabiana;
Sandve, Simen Rød;
Aasland, Rein;
Paulsen, Jonas

Publication type:

Article

Dokdo sea lion Zalophus japonicus genome reveals its evolutionary trajectory before extinction.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02351-3

By:

Kim, Jungeun;
Blazyte, Asta;
Choi, Jae-Pil;
Kim, Changjae;
Sharko, Fedor;
Jeon, Sungwon;
Kim, Eun-Mi;
Sohn, Hawsun;
Lee, Jong Hee;
Kim, Hyun Woo;
Yoo, Mi Hyun;
Lee, Kyunglee;
Nedoluzhko, Artem;
Bhak, Jong

Publication type:

Article

Kazakh Tobet dogs in the genomic landscape: refining the history of livestock guardian breeds.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02344-2

By:

Perfilyeva, Anastassiya;
Bespalova, Kira;
Kuzovleva, Yelena;
Begmanova, Mamura;
Amirgaliyeva, Almira;
Vishnyakova, Olga;
Nazarenko, Inna;
Bespalov, Sergey;
Zhaxylykova, Assel;
Yerzhan, Arailym;
Yergali, Kanagat;
Perfilyeva, Yuliya;
Mussabayev, Rustam;
Zhaniyazov, Zhassulan

Publication type:

Article

Morphology and mechanical behavior of diatoms in wet and dry states studied using nano-XCT.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02341-5

By:

Li, Qiong;
Gluch, Jürgen;
Liao, Zhongquan;
Clausner, André;
Dąbek, Przemysław;
Zschech, Ehrenfried

Publication type:

Article

Accurate prediction of drug-protein interactions by maintaining the original topological relationships among embeddings.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02338-0

By:

Li, Yanfei;
Chen, Xiran;
Wang, Shuqin;
Wei, Jinmao

Publication type:

Article

Ephrin-B2 deletion in GABAergic neurons induces cognitive deficits associated with single-nucleus transcriptomic differences in the prefrontal cortex.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02333-5

By:

Ju, Peijun;
Fang, Yu;
Xiang, Siying;
Wang, Weidi;
Sun, Ying;
Wang, Wei;
Ding, Yanli;
Luo, Chao;
Jiang, Ping;
Chen, Jianhua

Publication type:

Article

Prediction of protein–protein interaction based on interaction-specific learning and hierarchical information.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02359-9

By:

Tang, Tao;
Shen, Taiguang;
Jiang, Jing;
Li, Weizhuo;
Wang, Peng;
Yuan, Sisi;
Cao, Xiaofeng;
Liu, Yuansheng

Publication type:

Article

Non-invasive light flickering reinstates visual plasticity in adult mice via lipocalin 2.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02360-2

By:

Ma, Chenchen;
Wang, Zhenni;
Wu, Wei;
Ma, Xiao;
Wang, Laijian;
Zhang, Xinxin;
Chen, Wenjing;
Kuang, Xi;
Li, Yufei;
Miao, Ying;
Xue, Tian;
Jiang, Bin;
Yang, Yupeng

Publication type:

Article

Prediction of protein–protein interaction based on interaction-specific learning and hierarchical information.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02359-9

By:

Tang, Tao;
Shen, Taiguang;
Jiang, Jing;
Li, Weizhuo;
Wang, Peng;
Yuan, Sisi;
Cao, Xiaofeng;
Liu, Yuansheng

Publication type:

Article

A CD24+CD271+ melanoma cancer stem cell possesses hybrid characteristics of its single marker counterparts and promotes invasion and therapeutic resistance.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02336-2

By:

Knowles, Olivia;
Doldan, Patricio;
Hillier-Richardson, Isabella;
Lunetto, Sophia;
Lunt, Stephanie;
Youssef, Gehad;
Gammon, Luke;
Mackenzie, Ian C.;
Philpott, Michael P.;
Rizvi, Hasan;
Bergamaschi, Daniele;
Harwood, Catherine A.;
Biddle, Adrian

Publication type:

Article

Quantification of leg mobility in the Burgess Shale Olenoides serratus indicates functional differences between trilobite and xiphosuran appendages.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02335-3

By:

Losso, Sarah R.;
Nanglu, Karma;
Weyland, Walker C.;
Ortega-Hernández, Javier

Publication type:

Article

Dokdo sea lion Zalophus japonicus genome reveals its evolutionary trajectory before extinction.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02351-3

By:

Kim, Jungeun;
Blazyte, Asta;
Choi, Jae-Pil;
Kim, Changjae;
Sharko, Fedor;
Jeon, Sungwon;
Kim, Eun-Mi;
Sohn, Hawsun;
Lee, Jong Hee;
Kim, Hyun Woo;
Yoo, Mi Hyun;
Lee, Kyunglee;
Nedoluzhko, Artem;
Bhak, Jong

Publication type:

Article

Multimodal deep learning for allergenic proteins prediction.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02347-z

By:

Yu, Lezheng;
Luo, Yuxin;
Wu, Shiqi;
Chen, Siyi;
Xue, Li;
Jing, Runyu;
Luo, Jiesi

Publication type:

Article

Uncovering protein prenylation in Th1 cells: novel prenylation sites and insights into statin and farnesyltransferase inhibition.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02345-1

By:

Koch, Jana;
Ruggia, Alessandra;
Beha, Carina;
Wipf, Irina;
Zhakparov, Damir;
Westermann, Patrick;
Schmelzer, Svenja;
Heider, Anja;
Fröhlich, Klemens;
Baerenfaller, Katja

Publication type:

Article

NR1I3 modulates Wnt signaling to promote anterior–posterior axis patterning.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02346-0

By:

Sun, Yujia;
Ding, Ning;
Li, Shuqi;
Zhang, Yuan;
Qin, Yunfei;
Hao, Zhitai;
Zhang, Shoutao;
Tian, Qingnan

Publication type:

Article

CanCellCap: robust cancer cell capture across tissue types on single-cell RNA-seq data by multi-domain learning.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02337-1

By:

Bai, Jiaxing;
Gao, Yichun;
Zhou, Feng;
He, Yushuang;
Lin, Chen;
Huang, Xiaobing;
Wang, Ying

Publication type:

Article

An ovarian insulin-like peptide specifically regulates energy allocation and oocyte development in nutrition-restricted cockroaches.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02342-4

By:

Luo, Yuan;
Hou, Wen-Xin;
Zhao, Shan-Shan;
Cheng, Yun-Long;
Zhang, Ke-Jia;
Lin, Liang-Guan;
Li, Sheng;
Pei, Xiao-Jin

Publication type:

Article

DTI-RME: a robust and multi-kernel ensemble approach for drug-target interaction prediction.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02340-6

By:

Qian, Yuqing;
Zhang, Xin;
Wang, Yizheng;
Zou, Quan;
Cao, Chen;
Ding, Yijie;
Guo, Xiaoyi

Publication type:

Article

Evolution of cetacean-specific conserved non-coding elements suggests their role in the limb changes during secondary aquatic adaptation.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02300-0

By:

Zhang, Zhenhua;
Yu, Zhenpeng;
Chong, Yujie;
Liu, Yao;
Liu, Jia;
Ren, Wenhua;
Xu, Shixia;
Yang, Guang

Publication type:

Article

Immune priming in the insect gut: a dynamic response revealed by ultrastructural and transcriptomic changes.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02334-4

By:

Baur, Moritz;
Schulz, Nora K. E.;
Greune, Lilo;
Länger, Zoe M.;
Eirich, Jürgen;
Finkemeier, Iris;
Peuß, Robert;
Dersch, Petra;
Kurtz, Joachim

Publication type:

Article

Universal orthologs infer deep phylogenies and improve genome quality assessments.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02328-2

By:

Alam, Md Nafis Ul;
Román-Palacios, Cristian;
Copetti, Dario;
Wing, Rod A.

Publication type:

Article

Aedes aegypti VLG-1 challenges the assumed antiviral nature of Vago genes.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02325-5

By:

Couderc, Elodie;
Crist, Anna B.;
Daron, Josquin;
Varet, Hugo;
van Hout, Femke A. H.;
Miesen, Pascal;
Palatini, Umberto;
Dabo, Stéphanie;
Vial, Thomas;
Lambrechts, Louis;
Merkling, Sarah H.

Publication type:

Article

Targeting the complement-mTOR-autophagy axis: the role of apolipoprotein E in depression.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02301-z

By:

Li, Yong;
Xu, Chengyuan;
Liu, Jing;
Guo, Mengru;
Wang, Jia;
Bai, Xianbing;
Cheng, Yujie;
Luan, Xinyue;
Pei, Huailong;
Zhang, Chenlei;
Liu, Huan;
Chen, Ming;
Tang, Binliang

Publication type:

Article

Decidual stromal cells-derived exosomes incured insufficient migration and invasion of trophoblast because of abnormal ubiquitination and degradation of Snail mediated by miR-92b-3p/USP28.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02326-4

By:

Xiong, Miao;
He, Ziqiu;
Wen, Liping;
Zhao, Aimin

Publication type:

Article

Integration of pre-trained protein language models with equivariant graph neural networks for peptide toxicity prediction.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02329-1

By:

Jiao, Shihu;
Ye, Xiucai;
Sakurai, Tetsuya;
Zou, Quan;
Han, Wu;
Zhan, Chao

Publication type:

Article

Resource reallocation under persistent immune activation drives trade-offs between life history and immunity in pirk-deficient Musca domestica.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02324-6

By:

Tang, Ting;
Yang, Lan;
Ma, Liya;
Ren, Yu;
Li, Mengnan;
Guo, Shufan;
Wang, Xin;
Zhang, Yuming;
Liu, Fengsong

Publication type:

Article

Wide-scale geographical analysis of genetic ancestry in the South African Coloured population.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02317-5

By:

Lankheet, Imke;
Hammarén, Rickard;
Alva Caballero, Lucía Ximena;
Larena, Maximilian;
Malmström, Helena;
Jolly, Cecile;
Soodyall, Himla;
de Jongh, Michael;
Schlebusch, Carina

Publication type:

Article

A lethal DENV-2 wild-type mouse model for mutagenesis investigations.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02332-6

By:

Qin, Zhiran;
Xie, Xiaoting;
Ye, Hua;
Wu, Hao;
Li, Zhuoyun;
Li, Jingshu;
He, Xiaoen;
Liang, Zuxin;
Liu, Xuling;
Zhu, Li;
Wu, Qinghua;
Xiao, Weiwei;
Wu, Kefeng;
Wan, Chengsong;
Zhang, Bao;
Sun, Zhaohui;
Yu, Jianhai;
Shen, Chenguang;
Yu, Linzhong;
Zhao, Wei

Publication type:

Article

A chromosome-level genome assembly of the Hispid cotton rat (Sigmodon hispidus), a model for human pathogenic virus infections.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02316-6

By:

Lilue, Jingtao;
Corvelo, André;
Gómez-Garrido, Jèssica;
Akagi, Keiko;
Yang, Fengtang;
Green, Gia;
Ng, Bee Ling;
Fu, Beiyuan;
Chorostecki, Uciel Pablo;
Warner, Sarah C.;
Marcet-Houben, Marina;
Keane, Thomas M.;
Mullikin, James C.;
Alioto, Tyler;
Gabaldón, Toni;
Hubert, Benjamin;
Symer, David E.;
Niewiesk, Stefan

Publication type:

Article

Marsupial Ig genomics revisited and the potential role of retroelements in the limited number of heavy chain isotypes.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02327-3

By:

Sampson, Jordan M.;
Mikolajova, Kieran J.;
Zimmerly, Kourtney M.;
Miller, Robert D.

Publication type:

Article

Ephaptic conduction molding memory engrams.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02323-7

By:

Rabinovitch, A.;
Rabinovitch, R.;
Braunstein, D.;
Smolik, E.;
Biton, Y.

Publication type:

Article

Organic cation transporter 3 on neuronal mitochondria mediates MPP+-induced mitochondrial dysfunction and neurotoxicity in a TIMM22-dependent manner.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02318-4

By:

Guan, Ao;
Han, Sida;
Liang, Suzhen;
Shen, Weiwei;
Guo, Min;
Cui, Mei

Publication type:

Article

iVAE: an interpretable representation learning framework enhances clustering performance for single-cell data.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02315-7

By:

Fu, Zeyu;
Chen, Chunlin;
Wang, Song;
Wang, Junping;
Chen, Shilei

Publication type:

Article

NeXtMD: a new generation of machine learning and deep learning stacked hybrid framework for accurate identification of anti-inflammatory peptides.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02314-8

By:

Xie, Chengzhi;
Wei, Yijie;
Luo, Xinwei;
Yang, Huan;
Lai, Hongyan;
Dao, Fuying;
Feng, Juan;
Lv, Hao

Publication type:

Article

Prediction of target genes and functional types of cis-regulatory modules in the human genome reveals their distinct properties.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02313-9

By:

Yuan, Sisi;
Ni, Pengyu;
Su, Zhengchang

Publication type:

Article

BertADP: a fine-tuned protein language model for anti-diabetic peptide prediction.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02312-w

By:

Xie, Xueqin;
Wu, Changchun;
Qi, Yixuan;
Liu, Shanghua;
Huang, Jian;
Lyu, Hao;
Dao, Fuying;
Lin, Hao

Publication type:

Article

Adar contributes to genome integrity by regulating R-loop homeostasis in Drosophila.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02310-y

By:

Zhang, Xuedi;
Liu, Hongyun;
Peng, Ju;
Wang, Guangbin;
Wu, Xiangyu;
Li, Shuai;
Zheng, Jie;
Sun, Qianwen;
Gao, Guanjun

Publication type:

Article

A 14-bp motif in the KIT active promoter region is critical for melanin accumulation in yaks, mice, and humans.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02311-x

By:

Liu, Xinfeng;
Wang, Tongcheng;
Zheng, Zeyu;
Dong, Congcong;
Liu, Wenyu;
Niu, Zhimin;
Yang, Yingbo;
Wu, Xiaoyun;
Qiu, Qiang;
Yang, Yongzhi;
Li, Kexin;
Lenstra, Johannes A.;
Yan, Ping;
Kang, Minghui;
Li, Bowen;
Fang, Lingzhao;
Liu, Jianquan

Publication type:

Article

Serial dependence in face-gender classification revealed in low-beta frequency EEG.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02289-6

By:

Ranieri, Giacomo;
Burr, David C.;
Bell, Jason;
Morrone, Maria Concetta

Publication type:

Article

Genome-wide identification of the interferon complex establishes IFNf in Cypriniformes.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02319-3

By:

Huang, Yu;
Zhang, Lei;
Yang, Xinyi;
Li, Yuqing;
Li, Zeyu;
Zhang, Qianqian;
Xu, Zhen

Publication type:

Article

KLF13 promotes ferroptosis and chemosensitivity in lung adenocarcinoma.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02303-x

By:

Shi, Haochun;
Pan, Binyang;
Wu, Gujie;
Liang, Jiaqi;
Bian, Yunyi;
Shan, Guangyao;
Ren, Shencheng;
Bi, Guoshu;
Zhan, Cheng;
Guo, Weigang

Publication type:

Article

Accurate prediction of synergistic drug combination using a multi-source information fusion framework.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02302-y

By:

Jin, Shuting;
Long, Huaze;
Huang, Anqi;
Wang, Jianming;
Yu, Xuan;
Xu, Zhiwei;
Xu, Junlin

Publication type:

Article

Chemerin sustains the growth of spongiotrophoblast and sinusoidal trophoblast giant cells through fatty acid oxidation.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02294-9

By:

Cai, Jia xuan;
Le, Ai wen;
Han, Xin yue;
Chen, Jie;
Lei, Xiao hua;
Huang, Chen;
Zhang, Jian V.

Publication type:

Article

Age-resistant worker reproductive potential and effect of helpers on prolonged lifespan in an ant.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02305-9

By:

Haight, Kevin L.;
Liebig, Juergen

Publication type:

Article

Deep learning-based dipeptidyl peptidase IV inhibitor screening, experimental validation, and GaMD/LiGaMD analysis.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02295-8

By:

He, Yi;
Zhang, Yan;
Liu, Minghao;
Li, Jiaying;
Li, Wannan;
Han, Weiwei

Publication type:

Article

A gap-free reference genome of Populus deltoides provides insights into karyotype evolution of Salicaceae.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02304-w

By:

Bi, Changwei;
Sun, Ning;
Hou, Zhuangwei;
Dai, Xiaogang;
Wu, Huaitong;
Han, Fuchuan;
Wang, Zefu;
Yin, Tongming

Publication type:

Article

Astaxanthin prevents postovulatory oocyte aging by targeting TNFR2 and inhibiting the TNF signaling pathway.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02292-x

By:

Wen, Xin;
Han, Zhe;
Yang, Qi;
Shi, Ke-Song;
Sun, Dui;
Zhang, Xiao-Jie;
Liang, Cheng-Guang

Publication type:

Article

Single-cell transcriptomics and time-series metabolite profiling reveal the spatiotemporal regulation of flavonoid biosynthesis genes and phytohormone homeostasis by PAP1 in Arabidopsis.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02297-6

By:

Zhang, Bingxu;
Lam, Thomas Ka Yam;
Chen, Linheng;
Zhang, Chen;
Zhu, Liping;
Zhang, Hailei;
Wang, Pengxi;
Wang, Jianing;
Cai, Zongwei;
Xia, Yiji

Publication type:

Article