Works matching IS 1741-7007 AND VI 23 AND IP 1 AND DT 2025

Results: 221

Marsupial Ig genomics revisited and the potential role of retroelements in the limited number of heavy chain isotypes.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02327-3

By:

Sampson, Jordan M.;
Mikolajova, Kieran J.;
Zimmerly, Kourtney M.;
Miller, Robert D.

Publication type:

Article

Evolution of cetacean-specific conserved non-coding elements suggests their role in the limb changes during secondary aquatic adaptation.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02300-0

By:

Zhang, Zhenhua;
Yu, Zhenpeng;
Chong, Yujie;
Liu, Yao;
Liu, Jia;
Ren, Wenhua;
Xu, Shixia;
Yang, Guang

Publication type:

Article

Organic cation transporter 3 on neuronal mitochondria mediates MPP<sup>+</sup>-induced mitochondrial dysfunction and neurotoxicity in a TIMM22-dependent manner.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02318-4

By:

Guan, Ao;
Han, Sida;
Liang, Suzhen;
Shen, Weiwei;
Guo, Min;
Cui, Mei

Publication type:

Article

iVAE: an interpretable representation learning framework enhances clustering performance for single-cell data.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02315-7

By:

Fu, Zeyu;
Chen, Chunlin;
Wang, Song;
Wang, Junping;
Chen, Shilei

Publication type:

Article

NeXtMD: a new generation of machine learning and deep learning stacked hybrid framework for accurate identification of anti-inflammatory peptides.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02314-8

By:

Xie, Chengzhi;
Wei, Yijie;
Luo, Xinwei;
Yang, Huan;
Lai, Hongyan;
Dao, Fuying;
Feng, Juan;
Lv, Hao

Publication type:

Article

Prediction of target genes and functional types of cis-regulatory modules in the human genome reveals their distinct properties.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02313-9

By:

Yuan, Sisi;
Ni, Pengyu;
Su, Zhengchang

Publication type:

Article

BertADP: a fine-tuned protein language model for anti-diabetic peptide prediction.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02312-w

By:

Xie, Xueqin;
Wu, Changchun;
Qi, Yixuan;
Liu, Shanghua;
Huang, Jian;
Lyu, Hao;
Dao, Fuying;
Lin, Hao

Publication type:

Article

Adar contributes to genome integrity by regulating R-loop homeostasis in Drosophila.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02310-y

By:

Zhang, Xuedi;
Liu, Hongyun;
Peng, Ju;
Wang, Guangbin;
Wu, Xiangyu;
Li, Shuai;
Zheng, Jie;
Sun, Qianwen;
Gao, Guanjun

Publication type:

Article

A 14-bp motif in the KIT active promoter region is critical for melanin accumulation in yaks, mice, and humans.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02311-x

By:

Liu, Xinfeng;
Wang, Tongcheng;
Zheng, Zeyu;
Dong, Congcong;
Liu, Wenyu;
Niu, Zhimin;
Yang, Yingbo;
Wu, Xiaoyun;
Qiu, Qiang;
Yang, Yongzhi;
Li, Kexin;
Lenstra, Johannes A.;
Yan, Ping;
Kang, Minghui;
Li, Bowen;
Fang, Lingzhao;
Liu, Jianquan

Publication type:

Article

Serial dependence in face-gender classification revealed in low-beta frequency EEG.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02289-6

By:

Ranieri, Giacomo;
Burr, David C.;
Bell, Jason;
Morrone, Maria Concetta

Publication type:

Article

Genome-wide identification of the interferon complex establishes IFNf in Cypriniformes.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02319-3

By:

Huang, Yu;
Zhang, Lei;
Yang, Xinyi;
Li, Yuqing;
Li, Zeyu;
Zhang, Qianqian;
Xu, Zhen

Publication type:

Article

A gap-free reference genome of Populus deltoides provides insights into karyotype evolution of Salicaceae.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02304-w

By:

Bi, Changwei;
Sun, Ning;
Hou, Zhuangwei;
Dai, Xiaogang;
Wu, Huaitong;
Han, Fuchuan;
Wang, Zefu;
Yin, Tongming

Publication type:

Article

Accurate prediction of synergistic drug combination using a multi-source information fusion framework.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02302-y

By:

Jin, Shuting;
Long, Huaze;
Huang, Anqi;
Wang, Jianming;
Yu, Xuan;
Xu, Zhiwei;
Xu, Junlin

Publication type:

Article

Chemerin sustains the growth of spongiotrophoblast and sinusoidal trophoblast giant cells through fatty acid oxidation.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02294-9

By:

Cai, Jia xuan;
Le, Ai wen;
Han, Xin yue;
Chen, Jie;
Lei, Xiao hua;
Huang, Chen;
Zhang, Jian V.

Publication type:

Article

Age-resistant worker reproductive potential and effect of helpers on prolonged lifespan in an ant.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02305-9

By:

Haight, Kevin L.;
Liebig, Juergen

Publication type:

Article

Brain miR-137 governs growth and development via GH/IGF-1 signaling.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02306-8

By:

Liao, Keng-Mao;
Hsu, Wei-Lun;
Huang, Wan-Yi;
Luo, Wei-Jia;
Chang, Jung-Hsuan;
Yu, Sung-Liang;
Yang, Pan-Chyr;
Su, Kang-Yi

Publication type:

Article

KLF13 promotes ferroptosis and chemosensitivity in lung adenocarcinoma.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02303-x

By:

Shi, Haochun;
Pan, Binyang;
Wu, Gujie;
Liang, Jiaqi;
Bian, Yunyi;
Shan, Guangyao;
Ren, Shencheng;
Bi, Guoshu;
Zhan, Cheng;
Guo, Weigang

Publication type:

Article

Ancient genomes in Southwest China revealed genetic interactions among diverse populations in the historical period.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02299-4

By:

Wan, Wen;
Huang, Huangzhen;
Hu, Changguo;
Zhang, Xinglong;
Zhou, Qingting;
Yang, Meiqing;
Guo, Jianxin;
Xie, Mingxia;
Zhu, Kongyang;
Yang, Xiaomin;
Ma, Hao;
Wang, Rui;
Zhao, Jing;
Tao, Le;
He, Haifeng;
Zhang, Qun;
Jin, Li;
Zhou, Bisu;
Huang, Jiang;
Wang, Chuan-Chao

Publication type:

Article

Single-cell transcriptomics and time-series metabolite profiling reveal the spatiotemporal regulation of flavonoid biosynthesis genes and phytohormone homeostasis by PAP1 in Arabidopsis.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02297-6

By:

Zhang, Bingxu;
Lam, Thomas Ka Yam;
Chen, Linheng;
Zhang, Chen;
Zhu, Liping;
Zhang, Hailei;
Wang, Pengxi;
Wang, Jianing;
Cai, Zongwei;
Xia, Yiji

Publication type:

Article

Construction of the graph genomes of Takifugu provides novel insights into the genomic mechanisms of population structure and migratory traits.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02296-7

By:

He, Rui-shi;
Zhao, Rong;
Lin, Jun-jie;
Li, Yan;
Kong, Xiang-zhu;
Xu, Jin-xuan;
Wu, Jing-hang;
Bu, Xing-jiang;
Zhang, Yong-jun;
Sun, Yang

Publication type:

Article

Deep learning-based dipeptidyl peptidase IV inhibitor screening, experimental validation, and GaMD/LiGaMD analysis.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02295-8

By:

He, Yi;
Zhang, Yan;
Liu, Minghao;
Li, Jiaying;
Li, Wannan;
Han, Weiwei

Publication type:

Article

Development and characterization of a fully humanized ACE2 mouse model.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02293-w

By:

Ge, Chunyu;
Salem, Amr R.;
Elsharkawy, Amany;
Natekar, Janhavi;
Guglani, Anchala;
Doja, Jaser;
Ogala, Osarume;
Wang, Gavin;
Griffin, Susan H.;
Slivano, Orazio J.;
Shoemaker, Robin;
Ogola, Benard O.;
Basler, Christopher F.;
Kumar, Ajay;
Bryant, W. Bart;
Kumar, Mukesh;
Miano, Joseph M.

Publication type:

Article

Astaxanthin prevents postovulatory oocyte aging by targeting TNFR2 and inhibiting the TNF signaling pathway.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02292-x

By:

Wen, Xin;
Han, Zhe;
Yang, Qi;
Shi, Ke-Song;
Sun, Dui;
Zhang, Xiao-Jie;
Liang, Cheng-Guang

Publication type:

Article

Deciphering gut microbiome patterns from host preferences and microbial interactions in healthy Korean individuals.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02291-y

By:

Hong, Seungpyo;
Lim, Mi Young;
Chung, Won-Hyong;
Shin, Ji-Hee;
Nam, Young-Do

Publication type:

Article

stGRL: spatial domain identification, denoising, and imputation algorithm for spatial transcriptome data based on multi-task graph contrastive representation learning.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02290-z

By:

Lu, Xin;
Zhou, Murong;
Gao, Bo;
Wang, Fang;
Jin, Shuilin;
Liu, Qiaoming;
Wang, Guohua

Publication type:

Article

Mutations of the complex I PSST target gene confers acaricide resistance and a fitness cost in Panonychus citri.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02288-7

By:

Pan, Deng;
Xia, Menghao;
Li, Chuanzhen;
Liu, Xunyan;
Archdeacon, Lewis;
O'Reilly, Andrias O.;
Yuan, Guorui;
Wang, Jinjun;
Dou, Wei

Publication type:

Article

Refining the genetic structure and admixture history of Hmong-Mien populations.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02287-8

By:

Yang, Meiqing;
Huang, Huangzhen;
Zhang, Han;
Wan, Wen;
Zhu, Kongyang;
Wang, Rui;
Li, Jinxi;
Chen, Lu;
Huang, Jiang;
Wang, Chuan-Chao

Publication type:

Article

The demic expansion of Yangshao culture inferred from ancient human genomes.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02286-9

By:

Sun, Lei;
Ma, Hao;
Wang, Rui;
Wu, Zhijiang;
Qiu, Limin;
Chen, Haodong;
Wang, Chuan-Chao

Publication type:

Article

Biomonitoring 2.0 Refined: observing local change through metaphylogeography using a community-based eDNA metabarcoding monitoring network.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02284-x

By:

Riley, Andrew C.;
Wright, Michael;
Porter, Teresita M.;
Maitland, V. Carley;
Baird, Donald J.;
Hajibabaei, Mehrdad

Publication type:

Article

Strain sharing and mobile genetic elements shape the interconnected resistomes of Campylobacter coli in Brazil.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02283-y

By:

Buiatte, Ana Beatriz Garcez;
Costa, Leticia Roberta Martins;
Souza, Stephanie S. R.;
Zac Soligno, Nicole I.;
de Melo, Roberta Torres;
Armendaris, Paulo Marcel;
Rossi, Daise Aparecida;
Andam, Cheryl P.

Publication type:

Article

An ancient influenza genome from Switzerland allows deeper insights into host adaptation during the 1918 flu pandemic in Europe.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02282-z

By:

Urban, Christian;
Vrancken, Bram;
Patrono, Livia V.;
Düx, Ariane;
Le Vu, Mathilde;
Matthes, Katarina L.;
Burkhard-Koren, Nina Maria;
Widulin, Navena;
Schnalke, Thomas;
Carraro, Sabina;
Rühli, Frank;
Lemey, Philippe;
Staub, Kaspar;
Calvignac-Spencer, Sébastien;
Schuenemann, Verena J.

Publication type:

Article

Adaptation of Diqing Tibetan pigs to hypoxic and cold environments through extramedullary hematopoiesis and uncoupled thermogenesis in the liver.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02281-0

By:

Li, Xinpeng;
Dong, Xinxing;
Zhao, Shuhong;
Ma, Yunlong;
Jin, Siqi;
Zhou, Chunlu;
Lan, Yi;
Luo, Shuyuan;
Ni, Bin;
Wei, Hongjiang;
Yan, Dawei

Publication type:

Article

Epigenetic silencing and genome dynamics determine the fate of giant virus endogenizations in Acanthamoeba.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02280-1

By:

Blais, Cédric;
Colp, Morgan J.;
Sarre, Luke A.;
de Mendoza, Alex;
Archibald, John M.

Publication type:

Article

Multi-dimensional annotation of porcine variants using genomic and epigenomic features in pigs.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02279-8

By:

Yin, Hongwei;
Yang, Liu;
Zhao, Qianyi;
Yao, Wenye;
Teng, Jinyan;
Gao, Yahui;
Xu, Zhiting;
Lin, Qing;
Diao, Shuqi;
Liu, Xiaohong;
Zhao, Fuping;
Zhou, Zhongyin;
Wang, Qishan;
Li, Jiaqi;
Zhang, Zhe;
Zhou, Huaijun;
Groenen, Martien A. M.;
Madsen, Ole;
Bai, Lijing;
Guan, Dailu

Publication type:

Article

Multi-omics profiling of Nanhaia speciosa and Nanhaia fordii: insights into lectin dynamics, nodulation, and triterpenoid saponin biosynthesis.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02278-9

By:

Li, Zhiying;
Wang, Jiabin;
Zhang, Junfang;
Fu, Yunliu;
Jing, Yonglin;
Huang, Bilan;
Wu, Huazhou;
Meng, Chunyang;
Xu, Li

Publication type:

Article

Ophiocordyceps sinensis-induced changes in Thitarodes xiaojinensis: from intestinal barrier destruction, microbiome dysbiosis to immune responses at the molecular level.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02277-w

By:

Bao, Xiu-wen;
Wang, Qing-he;
Li, Ting;
Li, Yong;
Bian, Zhi-ying;
Liu, Si-jing;
He, Li-ying;
Niu, Shu-qi;
Guo, Jin-lin

Publication type:

Article

The genome of a sea spider corroborates a shared Hox cluster motif in arthropods with a reduced posterior tagma.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02276-x

By:

Papadopoulos, Nikolaos;
Kulkarni, Siddharth S.;
Baranyi, Christian;
Fromm, Bastian;
Setton, Emily V. W.;
Sharma, Prashant P.;
Wanninger, Andreas;
Brenneis, Georg

Publication type:

Article

Lipid metabolites affected by deficient autophagy antagonize the occurrence of autophagy through AMPK signaling in insects.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02274-z

By:

Tian, Ling;
Zhong, Qien;
Yang, Yubei;
Wu, Wenmei;
Xiao, Yang;
Li, Sheng;
Li, Kang

Publication type:

Article

AMCL: supervised contrastive learning with hard sample mining for multi-functional therapeutic peptide prediction.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02273-0

By:

Fang, Jiwei;
Fan, Henghui;
Zhao, Jintao;
Zhao, Jianping;
Xia, Junfeng

Publication type:

Article

Rotifers in space: transcriptomic response of the bdelloid rotifer Adineta vaga aboard the International Space Station.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02272-1

By:

Moris, Victoria C.;
Bruneau, Lucie;
Berthe, Jérémy;
Coos, Richard;
Baselet, Bjorn;
Heuskin, Anne-Catherine;
Caplin, Nicol;
Demets, René;
Krause, Jutta;
Zuijderduijn, Lobke;
Tortora, Alexandra;
Herova, Magdalena;
Penninckx, Sébastien;
Parmitano, Luca;
Tabury, Kevin;
Baatout, Sarah;
Van Doninck, Karine;
Hespeels, Boris

Publication type:

Article

Avian interferon regulatory factor (IRF) family reunion: IRF3 and IRF9 found.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02261-4

By:

Ungrová, Lenka;
Geryk, Josef;
Kohn, Marina;
Kučerová, Dana;
Krchlíková, Veronika;
Hron, Tomáš;
Pečenka, Vladimír;
Pajer, Petr;
Gáliková, Eliška;
Pecnová, Ľubomíra;
Kaspers, Bernd;
Hejnar, Jiří;
Nehyba, Jiří;
Elleder, Daniel

Publication type:

Article

The hierarchical folding dynamics of topologically associating domains during early embryo development.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02259-y

By:

Bai, Xuemei;
Tang, Xiaohan;
Wang, Yuyang;
Yue, Shutong;
Xu, Xiang;
Hu, Pengzhen;
Xu, Jingxuan;
Li, Yaru;
Wang, Junting;
Tao, Huan;
Zheng, Yang;
Chen, Bijia;
Tian, Mengge;
Lin, Lin;
Wang, Ruiqing;
Sun, Yu;
Ren, Chao;
Bo, Xiaochen;
Li, Hao;
Chen, Hebing

Publication type:

Article

Joint fusion of sequences and structures of drugs and targets for identifying targets based on intra and inter cross-attention mechanisms.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02256-1

By:

Zeng, Xin;
Su, Guang-Peng;
Du, Wen-Feng;
Jiang, Bei;
Li, Yi;
Yang, Zi-Zhong

Publication type:

Article

AmpHGT: expanding prediction of antimicrobial activity in peptides containing non-canonical amino acids using multi-view constrained heterogeneous graph transformer.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02253-4

By:

He, Yongcheng;
Song, Xu;
Wan, Hongping;
Zhao, Xinghong

Publication type:

Article

GraphGIM: rethinking molecular graph contrastive learning via geometry image modeling.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02249-0

By:

Li, Chaoyi;
Xiang, Hongxin;
Du, Wenjie;
Ma, Tengfei;
Chen, Haowen;
Zeng, Xiangxiang;
Xu, Lei

Publication type:

Article

doc2a and doc2b contribute to locomotor and social behaviors by down-regulating npas4b in zebrafish.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02224-9

By:

Chi, Yali;
Feng, Tao;
Du, Zixin;
Huang, Ping;
Yu, Wenjun;
Liu, Haihua;
Wang, Wanshan;
Yang, Xinping;
Huang, Liping

Publication type:

Article

The phosphatase PPM1F, a negative regulator of integrin activity, is essential for embryonic development and controls tumor cell invasion.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02254-3

By:

Grimm, Tanja M.;
Dierdorf, Nina I.;
Herbinger, Marleen;
Baumgärtner, Sarah;
Sontowski, Erik;
Paone, Christoph;
Baade, Timo;
Hauck, Christof R.

Publication type:

Article

Author Correction: Tyrosinase in melanoma inhibits anti-tumor activity of PD-1 deficient T cells.

Published in:

2025

By:

Huang, Rong;
Wang, Yingbin;
Teng, Haitao;
Xu, Mengjun;
He, Kexin;
Shen, Yingzhuo;
Guo, Guo;
Feng, Xinyu;
Li, Tianhan;
Zhou, Binhui;
Bajenoff, Marc;
Lawrence, Toby;
Liang, Yinming;
Lu, Liaoxun;
Zhang, Lichen

Publication type:

Correction Notice

Beyond venomous fangs: Uloboridae spiders have lost their venom but not their toxicity.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02248-1

By:

Peng, Xiaojing;
Dersch, Ludwig;
Dresler, Josephine;
Lüddecke, Tim;
Dederichs, Tim;
Michalik, Peter;
Peigneur, Steve;
Tytgat, Jan;
Hassan, Afrah;
Mucciolo, Antonio;
Robinson-Rechavi, Marc;
Zancolli, Giulia

Publication type:

Article

Deciphering alternative splicing patterns during cell fate transition of fast chemical reprogramming.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02264-1

By:

Lu, Yunkun;
Lin, Kainan;
Ruan, Yeling;
Li, Junjie;
Zhang, Huizhen;
Pan, Tianyuan;
Wang, Qianqian;
Lin, Lianyu;
Feng, Sijie

Publication type:

Article